Clone Sequence Records
BO10548.3prime Sequence
541 bp (379 high quality bases) assembled on 2006-04-19
> BO10548.3prime
ATGGTCTAGAAAGCTTGCACTACGTACGGATTCCTCCTTAACATTGGGCG
TAATACTGGCCCCCGTCGTAACTGTGTCTTTGTCCTTGGTACCAAAATCC
GGATACAGCTTGGCCACTTGACCCAACGGAGTGCAAAGGCGTCCCGAGAA
ATCCAATCGTTTGTTGGACTGGCTTCGCTCTGCTGAGGATATAATATCTA
GCAGGGATCTTTGCCCACAACTAGACATGCGACGCTTGCTCGCCTTGAGA
AGGCTATTGGAGCTGCTGCTGCCACTAGCACCGACGCTACTGATGGGCTC
CAGCCGTTCGGGAGAGAGTGGGGATTCCGTGTAGGTGCGCAGGAGACTTG
CTCCAGGTTCCGACTTCAGCGGGGCATCGCCGTATGCGGCTCGCAAACTC
TGTAGGCTTTCCCAGCAGATTTTTATGGTGCATTGTGGTGGCATTTAGTT
GAATTAATTGCTCCAGTTCCCTGTACAGCAAGCGGTACTGGTCTTTTGGC
CTTGGAAAGCTTTAGTCTTGCTCCATTGGTGTGGGTAAATG
BO10548.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6814-PA | 2070 | Mat89Bb-RA | 1674..2067 | 412..19 | 1970 | 100 | Minus |
| CG6814-PA | 2070 | Mat89Bb-RA | 1591..1675 | 496..412 | 425 | 100 | Minus |
| CG6814-PA | 2070 | Mat89Bb-RA | 1547..1593 | 541..495 | 235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| asun-RA | 2497 | CG6814-RA | 1629..2149 | 541..19 | 2565 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16265986..16266293 | 518..209 | 1450 | 99.4 | Minus |
| 3R | 32079331 | 3R | 16266352..16266543 | 210..19 | 960 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:38:24 has no hits.
BO10548.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:42:40 Download gff for
BO10548.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6814-PA | 1547..2070 | 15..541 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:57:32 Download gff for
BO10548.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6814-PA | 1547..2070 | 15..541 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:51:20 Download gff for
BO10548.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| asun-RA | 1629..2152 | 15..541 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:32 Download gff for
BO10548.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| asun-RA | 1629..2152 | 15..541 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:32 Download gff for
BO10548.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16265899..16265923 | 517..541 | 100 | -> | Minus |
| 3R | 16265988..16266293 | 209..516 | 99 | -> | Minus |
| 3R | 16266354..16266546 | 15..208 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:51:20 Download gff for
BO10548.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12091621..12091645 | 517..541 | 100 | -> | Minus |
| arm_3R | 12091710..12092015 | 209..516 | 99 | -> | Minus |
| arm_3R | 12092076..12092268 | 15..208 | 98 | | Minus |
BO10548.5prime Sequence
472 bp (442 high quality bases) assembled on 2006-04-19
> BO10548.5prime
GAAGTTATCAGTCGACATGTTCGAACGCAACCAGAAGACCATCTTTGTGC
TGGACCACACCCGATACTTTAGCATCGCCAGCGAGGAGTACATCTCGATG
GACTTCCTAAAGGGAAAACCATCTGCAGACGGCGGCGCAACAGGAGCGGC
GGGAAATGCAACCGGCAGCGGTGGATCCCAATTCAGCAAGAGCCTGTGGA
CATGCGCCTGCGAATCCTCCATCGAGTACTGCCGCGTGGTCTGGGATCTC
TTTCCCGGCAAAAAGCATGTGCGGTTTATTGTCTCGGACACGGCGGCGCA
TATCGTGAACACCTGGAGGCCCAGCACGCAAAATATGGCGCACGTGATGA
ACGCAATGCTAATTGTGGGCGTGCCGTCGCGCAACGTACCCACATCTTCT
GACTACTCGGTAATCCATGGCCTGCGGGCCGCCATCGAAGCGCTGGCGGA
GCCCACCGATGAGCAGTTGGCG
BO10548.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6814-PA | 2070 | Mat89Bb-RA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:54:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| asun-RA | 2497 | CG6814-RA | 82..538 | 16..472 | 2285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:54:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16264352..16264808 | 16..472 | 2285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:54:31 has no hits.
BO10548.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:42:41 Download gff for
BO10548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6814-PA | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:57:34 Download gff for
BO10548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6814-PA | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:39:07 Download gff for
BO10548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| asun-RA | 75..538 | 10..472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:24:53 Download gff for
BO10548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| asun-RA | 75..538 | 10..472 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:24:53 Download gff for
BO10548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16264345..16264808 | 10..472 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:39:07 Download gff for
BO10548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12090067..12090530 | 10..472 | 99 | | Plus |
BO10548.complete Sequence
2101 bp assembled on 2007-11-02
GenBank Submission: FJ631802
> BO10548.complete
GAAGTTATCAGTCGACATGTTCGAACGCAACCAGAAGACCATCTTTGTGC
TGGACCACACCCGATACTTTAGCATCGCCAGCGAGGAGTACATCTCGATG
GACTTCCTAAAGGGAAAACCATCTGCAGACGGCGGCGCAACAGGAGCGGC
GGGAAATGCAACCGGCAGCGGTGGATCCCAATTCAGCAAGAGCCTGTGGA
CATGCGCCTGCGAATCCTCCATCGAGTACTGCCGCGTGGTCTGGGATCTC
TTTCCCGGCAAAAAGCATGTGCGGTTTATTGTCTCGGACACGGCGGCGCA
TATCGTGAACACCTGGAGGCCCAGCACGCAAAATATGGCGCACGTGATGA
ACGCAATGCTAATTGTGGGCGTGCCGTCGCGCAACGTACCCACATCTTCT
GACTACTCGGTAATCCATGGCCTGCGGGCCGCCATCGAAGCGCTGGCGGA
GCCCACCGATGAGCAGTTGGCGGCAATGGCCGACTTTGGGACCGACGAAC
TGCCGCGCATTCCCAACAAGGGTCGCGTCATCTGCATAACTTCAGCGCGT
GACAATACCAGCATGAAAAGCCTGGAGGACATCTTTAACACCGTGCTGGT
GCAGCAGAACACCCTAGCAGCTCCGCCCTCCAAGAAGGGACTGGTCATCG
ACCATTGCCACCTAGTTATCCTCAACATTGTGCCGCTGGGCGTTGAATCG
TTGGTTACCAATCGCAGCCTGCTCAAGATATCGCCGCTGCTTGATGTCGA
GATCCACACAGTCAGTGCCCCGGATATTTCCTATAAGCTGACGCACCTCA
TACTGAACCATTACGACCTAGCTAGTACCACGGTGACTAACATACCCATG
AAAGAGGAGCAGAACGCCAACTCCAGCGCCAACTACGATGTGGAAATCCT
GCACAGCCGAAGGGCCCACTCCATCACCTGTGGCCCAGATTTCAGTCTAC
CCACGAGCATCAAGCAAGGTGCCACATACGAAACAGTGACTCTTAAGTGG
TGCACACCGCGCGGTTGCGGCTCTGCAGATCTACAGCCCTGTCTGGGTCA
GTTCCTCGTGACACCGGTGGACGTCACCTCGCGGCCCAGTTCTTGCTTGA
TTAACTTTCTGCTTAACGGACGTTCAGTCTTGCTGGAAATGCCGCGCAAG
ACCGGCTCAAAGGCCACCAGCCATATGCTTTCTGCACGCGGTGGCGAGAT
CTTTGTGCACTCCCTGTGCATCACGCGCTCCTGCATGGATGAGGCTCCAT
CAATTACTGATGGCCCCGGAGGACGTGTCTCGGACTATCGCACCGCCGAA
CTTGGTCAACTGATCAAGATGTCGCGCGTGGTTCCGCTCAAGGTTAAGGA
TCCATCTGCTCCGCCCTTGACGCGCCGGTTGCCTCGCTACTTCCCCCTGA
CCACCAGCTCTTCGATTCTGTTCCATCTACAGCGACACATCAGTTGGCTT
CCGCATTTTCTCCATCTTTTAGTGAAGGAAGACATGGATAAGCAGGACGA
GGTGCGGTGCCAGCAGCACATTCACGAGCTGTACAAAAGCGCCTCGCGTG
GCGATGTCCTACCATTTACCCACACCAATGGAGCAAGACTAAAGCTTTCC
AAGGCCAAAGACCAGTACCGCTTGCTGTACAGGGAACTGGAGCAATTAAT
TCAACTAAATGCCACCACAATGCACCATAAAAATCTGCTGGAAAGCCTAC
AGAGTTTGCGAGCCGCATACGGCGATGCCCCGCTGAAGTCGGAACCTGGA
GCAAGTCTCCTGCGCACCTACACGGAATCCCCACTCTCTCCCGAACGGCT
GGAGCCCATCAGTAGCGTCGGTGCTAGTGGCAGCAGCAGCTCCAATAGCC
TTCTCAAGGCGAGCAAGCGTCGCATGTCTAGTTGTGGGCAAAGATCCCTG
CTAGATATTATATCCTCAGCAGAGCGAAGCCAGTCCAACAAACGATTGGA
TTTCTCGGGACGCCTTTGCACTCCGTTGGGTCAAGTGGCCAAGCTGTATC
CGGATTTTGGTACCAAGGACAAAGACACAGTTACGACGGGGGCCAGTATT
ACGCCCAATGTTAAGGAGGAATCCGTACGTAGTGCAAGCTTTCTAGACCA
T
BO10548.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| asun-RA | 2070 | CG6814-PA | 1..2067 | 17..2083 | 10335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| asun-RA | 2497 | CG6814-RA | 82..2149 | 16..2083 | 10340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16264352..16265923 | 16..1587 | 7860 | 100 | Plus |
| 3R | 32079331 | 3R | 16265986..16266293 | 1586..1893 | 1540 | 100 | Plus |
| 3R | 32079331 | 3R | 16266352..16266543 | 1892..2083 | 960 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:35:35 has no hits.
BO10548.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:11 Download gff for
BO10548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mat89Bb-RA | 1..2070 | 17..2087 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:32 Download gff for
BO10548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mat89Bb-RA | 178..2255 | 10..2087 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:15 Download gff for
BO10548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| asun-RA | 88..2149 | 22..2085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:47 Download gff for
BO10548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mat89Bb-RA | 191..2252 | 22..2085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:51 Download gff for
BO10548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| asun-RA | 88..2149 | 22..2085 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:51 Download gff for
BO10548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16264358..16265923 | 22..1587 | 100 | -> | Plus |
| 3R | 16265988..16266293 | 1588..1893 | 100 | -> | Plus |
| 3R | 16266354..16266543 | 1894..2085 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:15 Download gff for
BO10548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12091710..12092015 | 1588..1893 | 100 | -> | Plus |
| arm_3R | 12090080..12091645 | 22..1587 | 100 | -> | Plus |
| arm_3R | 12092076..12092265 | 1894..2085 | 98 | | Plus |
BO10548.pep Sequence
Translation from 16 to 2101
> BO10548.pep
MFERNQKTIFVLDHTRYFSIASEEYISMDFLKGKPSADGGATGAAGNATG
SGGSQFSKSLWTCACESSIEYCRVVWDLFPGKKHVRFIVSDTAAHIVNTW
RPSTQNMAHVMNAMLIVGVPSRNVPTSSDYSVIHGLRAAIEALAEPTDEQ
LAAMADFGTDELPRIPNKGRVICITSARDNTSMKSLEDIFNTVLVQQNTL
AAPPSKKGLVIDHCHLVILNIVPLGVESLVTNRSLLKISPLLDVEIHTVS
APDISYKLTHLILNHYDLASTTVTNIPMKEEQNANSSANYDVEILHSRRA
HSITCGPDFSLPTSIKQGATYETVTLKWCTPRGCGSADLQPCLGQFLVTP
VDVTSRPSSCLINFLLNGRSVLLEMPRKTGSKATSHMLSARGGEIFVHSL
CITRSCMDEAPSITDGPGGRVSDYRTAELGQLIKMSRVVPLKVKDPSAPP
LTRRLPRYFPLTTSSSILFHLQRHISWLPHFLHLLVKEDMDKQDEVRCQQ
HIHELYKSASRGDVLPFTHTNGARLKLSKAKDQYRLLYRELEQLIQLNAT
TMHHKNLLESLQSLRAAYGDAPLKSEPGASLLRTYTESPLSPERLEPISS
VGASGSSSSNSLLKASKRRMSSCGQRSLLDIISSAERSQSNKRLDFSGRL
CTPLGQVAKLYPDFGTKDKDTVTTGASITPNVKEESVRSASFLDH
BO10548.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| asun-PA | 689 | CG6814-PA | 1..689 | 1..689 | 3552 | 100 | Plus |
