Clone BO10558 Report

Search the DGRC for BO10558

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:105
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG4542-RA
Protein status:BO10558.pep: validated full length
Sequenced Size:1567

Clone Sequence Records

BO10558.5prime Sequence

505 bp (281 high quality bases) assembled on 2006-04-19

> BO10558.5prime
GAAGTTATCAGTCGACATGAAGGACCTCTTCTGGCACCTGGTGGGCATAG
CCACCGGCCTAAAGATCCTGCTGATTCCAGCCTACCATTCCACGGATTTC
GAAGTCCATCGCAACTGGCTGGCCATCACCCACAGTTTGCCGCTGAATCA
GTGGTATGTGGACGCCACCAGCGAGTGGACACTGGACTATCCGCCGTTCT
TCGCCTACTTCGAGTGGCTGCTCTCGCAGGTGGCCAAGTACGTGGATCCA
CGAATGCTGGTGGTGGATAACCTGAATTACGAGTCCCAGGCCACCGTTTA
CTTTCAGCGGCTCTCGGTGATTGTTACGGATCTAGTGTATGTGCTCGGCG
TGCGCAGCTGCCTGGGCTCACTGGGATTGGGCAGGGATACGCAGCAGTTC
TTTGCCGCCTCCATGTTGCTGCTCCTCAACGTGGGATTGATCTTCGTGGA
CCACTTTCACTTTCAGTACAATGGCTTGCTGTTCGGCATACTGCTTCTGA
GCATC

BO10558.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4542-PA 1536 CG4542-RA 1..489 17..505 2370 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
xit-RA 1640 CG4542-RA 78..566 17..505 2400 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6821216..6821636 85..505 2060 99.3 Plus
X 23542271 X 6821093..6821160 17..84 340 100 Plus
Blast to na_te.dros performed on 2015-02-02 12:49:33 has no hits.

BO10558.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:42:51 Download gff for BO10558.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4542-PA 1..489 17..505 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:57:48 Download gff for BO10558.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4542-PA 1..489 17..505 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:03:28 Download gff for BO10558.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4542-RA 78..566 17..505 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:43:55 Download gff for BO10558.5prime
Subject Subject Range Query Range Percent Splice Strand
xit-RA 78..566 17..505 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:43:55 Download gff for BO10558.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6821093..6821160 17..84 100 -> Plus
X 6821216..6821636 85..505 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:03:28 Download gff for BO10558.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6715126..6715193 17..84 100 -> Plus
arm_X 6715249..6715669 85..505 99   Plus

BO10558.complete Sequence

1567 bp assembled on 2007-11-02

GenBank Submission: FJ631803

> BO10558.complete
GAAGTTATCAGTCGACATGAAGGACCTCTTCTGGCACCTGGTGGGCATAG
CCACCGGCCTAAAGATCCTGCTGATTCCAGCCTACCATTCCACGGATTTC
GAAGTCCATCGCAACTGGCTGGCCATCACCCACAGTTTGCCGCTGAATCA
GTGGTATGTGGACGCCACCAGCGAGTGGACACTGGACTATCCGCCGTTCT
TCGCCTACTTCGAGTGGCTGCTCTCGCAGGTGGCCAAGTACGTGGATCCA
CGAATGCTGGTGGTGGATAACCTGAATTACGAGTCCAAGGCCACCGTTTA
CTTTCAGCGGCTCTCGGTGATTGTTACGGATCTAGTGTATGTGCTCGGCG
TGCGCAGCTGCCTGGGCTCACTGGGATTGGGCAGGGATACGCAGCAGTTC
TTTGCCGCCTCCATGTTGCTGCTCCTCAACGTGGGATTGATCTTCGTGGA
CCACATTCACTTTCAGTACAATGGCTTGCTGTTCGGCATACTGCTCCTGA
GCATCGGTTCCCTCATCCGGCAGCGGTTCCTCTGGAGCGCCTTTGCCTTC
GCCGTGCTGCTCAACTTTAAGCACATCTTTCTGTACATGGCGCCCGCTTT
TGGGGTCTACCTGCTGCGTTTCTATTGCCTGGAGCAAGCGAGTGTGGTGT
CTGCGGTGGGTGCCGTTGTCAAGCTGCTGGTCGTTGGACTTACTCCGTTC
GCCGTGTCTTTCGGACCCTTCTGGCAGCAATTGCCGCAAGTCCTCTCCCG
TCTGTTTCCTTTCAAGCGTGGCCTAACGCACGCCTACTGGGCACCCAACT
TCTGGGCGCTGTACAATGCCGCCGACAAGTTGGCCGCCGGAGTTTTGAAG
GTACAGGATGGCGGTGCCTCGACGACGTCAGGATTGGTCCAGGAGGTCAG
GCACTCGGTGCTGCCAGCCATCACACCGCCTGTGACTTTTGCCCTGACCG
CTCTCTTCATGCTGCCCATTTTGGTGAAGCTCTTTCGCAGTGCCAAGAAA
CAAAGTCCGCTGGTCTTCCTGCGAGCGGTGGTTTTGTGCGGCTGTTCCTC
CTTCGTCTTCGGCTGGCATGTGCACGAGAAGGCCATCTTAATGGTGCTCC
TTCCGCTCTGTCTGCTCACGCTGGTAAACCGGGAGGATGCCAGATACGCC
TATGTCCTTGGCATTGCCGGCTATTTCTCTCTCTTTCCGCTGCTCTTCGA
TGCGGATCTGTACATTCCCCGGTATTCCCTGTACATGTCGTACGTGGCCA
TGATGTACGGCCAGCTGTATCGCATCTTCCCCGGCTTCCGAGGCTTCCAC
ACGCTGGAGTGGCTATACATGCTGGGCTTCATGGCTATTCCGCTGTACGA
GCATCTGCTCTCTTTCCTGCTGCACCTGGACCAGCGCCTGCCCTTCTTGC
CCCTACTGCTGACCTCCGTGTACTCGGCGTTGGGAGTGCTCTACTTCTTT
GGGGCCTACTATCTGTACGCTCTGGGCATTAGCTGGGGCAAGGTGCCCAT
CGCATCGTCCACATCCGCGGCCGCTGTTAAGAGAAAACGAAAAACCAAAG
CAAGCTTTCTAGACCAT

BO10558.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:52:47
Subject Length Description Subject Range Query Range Score Percent Strand
xit-RA 1536 CG4542-PA 1..1533 17..1549 7665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
xit-RA 1640 CG4542-RA 78..1610 17..1549 7665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6821216..6822130 85..999 4575 100 Plus
X 23542271 X 6822371..6822810 1110..1549 2200 100 Plus
X 23542271 X 6822194..6822304 1000..1110 555 100 Plus
X 23542271 X 6821093..6821160 17..84 340 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:52:46 has no hits.

BO10558.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:12 Download gff for BO10558.complete
Subject Subject Range Query Range Percent Splice Strand
CG4542-RB 1..1536 17..1553 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:41 Download gff for BO10558.complete
Subject Subject Range Query Range Percent Splice Strand
Atx-1-RB 75..1610 17..1553 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:56 Download gff for BO10558.complete
Subject Subject Range Query Range Percent Splice Strand
CG4542-RA 78..1600 17..1539 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:45 Download gff for BO10558.complete
Subject Subject Range Query Range Percent Splice Strand
Atx-1-RB 75..1597 17..1539 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:31 Download gff for BO10558.complete
Subject Subject Range Query Range Percent Splice Strand
xit-RA 78..1600 17..1539 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:31 Download gff for BO10558.complete
Subject Subject Range Query Range Percent Splice Strand
X 6821093..6821160 17..84 100 -> Plus
X 6821216..6822130 85..999 100 -> Plus
X 6822194..6822304 1000..1110 100 -> Plus
X 6822372..6822800 1111..1539 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:56 Download gff for BO10558.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6715126..6715193 17..84 100 -> Plus
arm_X 6715249..6716163 85..999 100 -> Plus
arm_X 6716227..6716337 1000..1110 100 -> Plus
arm_X 6716405..6716833 1111..1539 100   Plus

BO10558.pep Sequence

Translation from 16 to 1567

> BO10558.pep
MKDLFWHLVGIATGLKILLIPAYHSTDFEVHRNWLAITHSLPLNQWYVDA
TSEWTLDYPPFFAYFEWLLSQVAKYVDPRMLVVDNLNYESKATVYFQRLS
VIVTDLVYVLGVRSCLGSLGLGRDTQQFFAASMLLLLNVGLIFVDHIHFQ
YNGLLFGILLLSIGSLIRQRFLWSAFAFAVLLNFKHIFLYMAPAFGVYLL
RFYCLEQASVVSAVGAVVKLLVVGLTPFAVSFGPFWQQLPQVLSRLFPFK
RGLTHAYWAPNFWALYNAADKLAAGVLKVQDGGASTTSGLVQEVRHSVLP
AITPPVTFALTALFMLPILVKLFRSAKKQSPLVFLRAVVLCGCSSFVFGW
HVHEKAILMVLLPLCLLTLVNREDARYAYVLGIAGYFSLFPLLFDADLYI
PRYSLYMSYVAMMYGQLYRIFPGFRGFHTLEWLYMLGFMAIPLYEHLLSF
LLHLDQRLPFLPLLLTSVYSALGVLYFFGAYYLYALGISWGKVPIASSTS
AAAVKRKRKTKASFLDH

BO10558.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
xit-PA 511 CG4542-PA 1..511 1..511 2661 100 Plus
gny-PB 475 CG5091-PB 30..472 21..498 367 28.4 Plus
gny-PA 475 CG5091-PA 30..472 21..498 367 28.4 Plus