Clone Sequence Records
BO10558.5prime Sequence
505 bp (281 high quality bases) assembled on 2006-04-19
> BO10558.5prime
GAAGTTATCAGTCGACATGAAGGACCTCTTCTGGCACCTGGTGGGCATAG
CCACCGGCCTAAAGATCCTGCTGATTCCAGCCTACCATTCCACGGATTTC
GAAGTCCATCGCAACTGGCTGGCCATCACCCACAGTTTGCCGCTGAATCA
GTGGTATGTGGACGCCACCAGCGAGTGGACACTGGACTATCCGCCGTTCT
TCGCCTACTTCGAGTGGCTGCTCTCGCAGGTGGCCAAGTACGTGGATCCA
CGAATGCTGGTGGTGGATAACCTGAATTACGAGTCCCAGGCCACCGTTTA
CTTTCAGCGGCTCTCGGTGATTGTTACGGATCTAGTGTATGTGCTCGGCG
TGCGCAGCTGCCTGGGCTCACTGGGATTGGGCAGGGATACGCAGCAGTTC
TTTGCCGCCTCCATGTTGCTGCTCCTCAACGTGGGATTGATCTTCGTGGA
CCACTTTCACTTTCAGTACAATGGCTTGCTGTTCGGCATACTGCTTCTGA
GCATC
BO10558.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4542-PA | 1536 | CG4542-RA | 1..489 | 17..505 | 2370 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:49:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
xit-RA | 1640 | CG4542-RA | 78..566 | 17..505 | 2400 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:49:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6821216..6821636 | 85..505 | 2060 | 99.3 | Plus |
X | 23542271 | X | 6821093..6821160 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:49:33 has no hits.
BO10558.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:42:51 Download gff for
BO10558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4542-PA | 1..489 | 17..505 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:57:48 Download gff for
BO10558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4542-PA | 1..489 | 17..505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:03:28 Download gff for
BO10558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4542-RA | 78..566 | 17..505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:43:55 Download gff for
BO10558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
xit-RA | 78..566 | 17..505 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:43:55 Download gff for
BO10558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6821093..6821160 | 17..84 | 100 | -> | Plus |
X | 6821216..6821636 | 85..505 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:03:28 Download gff for
BO10558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6715126..6715193 | 17..84 | 100 | -> | Plus |
arm_X | 6715249..6715669 | 85..505 | 99 | | Plus |
BO10558.complete Sequence
1567 bp assembled on 2007-11-02
GenBank Submission: FJ631803
> BO10558.complete
GAAGTTATCAGTCGACATGAAGGACCTCTTCTGGCACCTGGTGGGCATAG
CCACCGGCCTAAAGATCCTGCTGATTCCAGCCTACCATTCCACGGATTTC
GAAGTCCATCGCAACTGGCTGGCCATCACCCACAGTTTGCCGCTGAATCA
GTGGTATGTGGACGCCACCAGCGAGTGGACACTGGACTATCCGCCGTTCT
TCGCCTACTTCGAGTGGCTGCTCTCGCAGGTGGCCAAGTACGTGGATCCA
CGAATGCTGGTGGTGGATAACCTGAATTACGAGTCCAAGGCCACCGTTTA
CTTTCAGCGGCTCTCGGTGATTGTTACGGATCTAGTGTATGTGCTCGGCG
TGCGCAGCTGCCTGGGCTCACTGGGATTGGGCAGGGATACGCAGCAGTTC
TTTGCCGCCTCCATGTTGCTGCTCCTCAACGTGGGATTGATCTTCGTGGA
CCACATTCACTTTCAGTACAATGGCTTGCTGTTCGGCATACTGCTCCTGA
GCATCGGTTCCCTCATCCGGCAGCGGTTCCTCTGGAGCGCCTTTGCCTTC
GCCGTGCTGCTCAACTTTAAGCACATCTTTCTGTACATGGCGCCCGCTTT
TGGGGTCTACCTGCTGCGTTTCTATTGCCTGGAGCAAGCGAGTGTGGTGT
CTGCGGTGGGTGCCGTTGTCAAGCTGCTGGTCGTTGGACTTACTCCGTTC
GCCGTGTCTTTCGGACCCTTCTGGCAGCAATTGCCGCAAGTCCTCTCCCG
TCTGTTTCCTTTCAAGCGTGGCCTAACGCACGCCTACTGGGCACCCAACT
TCTGGGCGCTGTACAATGCCGCCGACAAGTTGGCCGCCGGAGTTTTGAAG
GTACAGGATGGCGGTGCCTCGACGACGTCAGGATTGGTCCAGGAGGTCAG
GCACTCGGTGCTGCCAGCCATCACACCGCCTGTGACTTTTGCCCTGACCG
CTCTCTTCATGCTGCCCATTTTGGTGAAGCTCTTTCGCAGTGCCAAGAAA
CAAAGTCCGCTGGTCTTCCTGCGAGCGGTGGTTTTGTGCGGCTGTTCCTC
CTTCGTCTTCGGCTGGCATGTGCACGAGAAGGCCATCTTAATGGTGCTCC
TTCCGCTCTGTCTGCTCACGCTGGTAAACCGGGAGGATGCCAGATACGCC
TATGTCCTTGGCATTGCCGGCTATTTCTCTCTCTTTCCGCTGCTCTTCGA
TGCGGATCTGTACATTCCCCGGTATTCCCTGTACATGTCGTACGTGGCCA
TGATGTACGGCCAGCTGTATCGCATCTTCCCCGGCTTCCGAGGCTTCCAC
ACGCTGGAGTGGCTATACATGCTGGGCTTCATGGCTATTCCGCTGTACGA
GCATCTGCTCTCTTTCCTGCTGCACCTGGACCAGCGCCTGCCCTTCTTGC
CCCTACTGCTGACCTCCGTGTACTCGGCGTTGGGAGTGCTCTACTTCTTT
GGGGCCTACTATCTGTACGCTCTGGGCATTAGCTGGGGCAAGGTGCCCAT
CGCATCGTCCACATCCGCGGCCGCTGTTAAGAGAAAACGAAAAACCAAAG
CAAGCTTTCTAGACCAT
BO10558.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:52:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
xit-RA | 1536 | CG4542-PA | 1..1533 | 17..1549 | 7665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
xit-RA | 1640 | CG4542-RA | 78..1610 | 17..1549 | 7665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6821216..6822130 | 85..999 | 4575 | 100 | Plus |
X | 23542271 | X | 6822371..6822810 | 1110..1549 | 2200 | 100 | Plus |
X | 23542271 | X | 6822194..6822304 | 1000..1110 | 555 | 100 | Plus |
X | 23542271 | X | 6821093..6821160 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:52:46 has no hits.
BO10558.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:12 Download gff for
BO10558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4542-RB | 1..1536 | 17..1553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:41 Download gff for
BO10558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atx-1-RB | 75..1610 | 17..1553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:56 Download gff for
BO10558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4542-RA | 78..1600 | 17..1539 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:45 Download gff for
BO10558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atx-1-RB | 75..1597 | 17..1539 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:31 Download gff for
BO10558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
xit-RA | 78..1600 | 17..1539 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:31 Download gff for
BO10558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6821093..6821160 | 17..84 | 100 | -> | Plus |
X | 6821216..6822130 | 85..999 | 100 | -> | Plus |
X | 6822194..6822304 | 1000..1110 | 100 | -> | Plus |
X | 6822372..6822800 | 1111..1539 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:56 Download gff for
BO10558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6715126..6715193 | 17..84 | 100 | -> | Plus |
arm_X | 6715249..6716163 | 85..999 | 100 | -> | Plus |
arm_X | 6716227..6716337 | 1000..1110 | 100 | -> | Plus |
arm_X | 6716405..6716833 | 1111..1539 | 100 | | Plus |
BO10558.pep Sequence
Translation from 16 to 1567
> BO10558.pep
MKDLFWHLVGIATGLKILLIPAYHSTDFEVHRNWLAITHSLPLNQWYVDA
TSEWTLDYPPFFAYFEWLLSQVAKYVDPRMLVVDNLNYESKATVYFQRLS
VIVTDLVYVLGVRSCLGSLGLGRDTQQFFAASMLLLLNVGLIFVDHIHFQ
YNGLLFGILLLSIGSLIRQRFLWSAFAFAVLLNFKHIFLYMAPAFGVYLL
RFYCLEQASVVSAVGAVVKLLVVGLTPFAVSFGPFWQQLPQVLSRLFPFK
RGLTHAYWAPNFWALYNAADKLAAGVLKVQDGGASTTSGLVQEVRHSVLP
AITPPVTFALTALFMLPILVKLFRSAKKQSPLVFLRAVVLCGCSSFVFGW
HVHEKAILMVLLPLCLLTLVNREDARYAYVLGIAGYFSLFPLLFDADLYI
PRYSLYMSYVAMMYGQLYRIFPGFRGFHTLEWLYMLGFMAIPLYEHLLSF
LLHLDQRLPFLPLLLTSVYSALGVLYFFGAYYLYALGISWGKVPIASSTS
AAAVKRKRKTKASFLDH
BO10558.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
xit-PA | 511 | CG4542-PA | 1..511 | 1..511 | 2661 | 100 | Plus |
gny-PB | 475 | CG5091-PB | 30..472 | 21..498 | 367 | 28.4 | Plus |
gny-PA | 475 | CG5091-PA | 30..472 | 21..498 | 367 | 28.4 | Plus |