Clone Sequence Records
BO10560.5prime Sequence
531 bp (278 high quality bases) assembled on 2006-04-19
> BO10560.5prime
GAAGTTATCAGTCGACATGTCGAGCGATTCGAGTCGAAGGATCCAGGTGC
CCGAGGAGCTGAAGGAGGTGCTGCTGCAGTTCTCGATCTCCTTTCTGGTG
GAACAACCGCCGGATGTGATCGATTACGCTGTGGAGTACTTCACCAAACT
GCAGTCGGAACGCCCGAGCGTCTCTCACACGGATCAAAGCACCGATGACC
AGCTGAGCGTCAACTCACAGGATGCCGATGCGGAACCACCAGTGATGGCC
AGCTCGCGTCGCANATCAGTTTTCGCCGAGGCCTACGATCCGGAGGCGGA
TGACGACGATGATGGCGCCACCGCCGTGTTCCCCCAAGACAGATGAGCAG
CGCGCCCGGCTGGGTCGAGTCGGTGAAGAACGTCCTCCTCTTTCCGATCC
CCTCGAGAAGGAGCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGAA
AGGTTCAGCCGGGTGACTTTATCATCCGCCAGGGTGACAACGGCGATAAC
TTTTTATGTTATTGAATCTGGCGTCTACAAA
BO10560.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15862-PA | 1134 | Pka-R2-RA | 1..318 | 17..334 | 1571 | 99.6 | Plus |
CG15862-PB | 1134 | Pka-R2-RB | 1..318 | 17..334 | 1571 | 99.6 | Plus |
CG15862-PC | 1134 | Pka-R2-RC | 1..318 | 17..334 | 1571 | 99.6 | Plus |
CG15862-PA | 1134 | Pka-R2-RA | 380..484 | 400..504 | 500 | 99 | Plus |
CG15862-PB | 1134 | Pka-R2-RB | 380..484 | 400..504 | 500 | 99 | Plus |
CG15862-PC | 1134 | Pka-R2-RC | 380..484 | 400..504 | 500 | 99 | Plus |
CG15862-PA | 1134 | Pka-R2-RA | 315..346 | 332..363 | 160 | 100 | Plus |
CG15862-PB | 1134 | Pka-R2-RB | 315..346 | 332..363 | 160 | 100 | Plus |
CG15862-PC | 1134 | Pka-R2-RC | 315..346 | 332..363 | 160 | 100 | Plus |
CG15862-PA | 1134 | Pka-R2-RA | 481..510 | 502..531 | 150 | 100 | Plus |
CG15862-PA | 1134 | Pka-R2-RA | 345..374 | 363..392 | 150 | 100 | Plus |
CG15862-PB | 1134 | Pka-R2-RB | 345..374 | 363..392 | 150 | 100 | Plus |
CG15862-PB | 1134 | Pka-R2-RB | 481..510 | 502..531 | 150 | 100 | Plus |
CG15862-PC | 1134 | Pka-R2-RC | 345..374 | 363..392 | 150 | 100 | Plus |
CG15862-PC | 1134 | Pka-R2-RC | 481..510 | 502..531 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:35:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pka-R2-RE | 2102 | CG15862-RE | 510..1019 | 17..531 | 2424 | 98.6 | Plus |
Pka-R2-RD | 1614 | CG15862-RD | 353..862 | 17..531 | 2424 | 98.6 | Plus |
Pka-R2-RB | 4108 | CG15862-RB | 374..883 | 17..531 | 2424 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:35:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10005157..10005370 | 230..17 | 1070 | 100 | Minus |
2R | 25286936 | 2R | 9999734..9999916 | 416..230 | 724 | 97.3 | Minus |
2R | 25286936 | 2R | 9999425..9999529 | 518..413 | 465 | 98.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:35:45 has no hits.
BO10560.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:42:53 Download gff for
BO10560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15862-PA | 1..507 | 17..528 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:57:51 Download gff for
BO10560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15862-PA | 1..507 | 17..528 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:51:01 Download gff for
BO10560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pka-R2-RB | 374..880 | 17..528 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:09:34 Download gff for
BO10560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pka-R2-RB | 374..880 | 17..528 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:34 Download gff for
BO10560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9999425..9999525 | 417..518 | 98 | <- | Minus |
2R | 9999734..9999915 | 231..416 | 97 | <- | Minus |
2R | 10005157..10005370 | 17..230 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:51:01 Download gff for
BO10560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5886930..5887030 | 417..518 | 98 | <- | Minus |
arm_2R | 5887239..5887420 | 231..416 | 97 | <- | Minus |
arm_2R | 5892662..5892875 | 17..230 | 100 | | Minus |
BO10560.complete Sequence
1165 bp assembled on 2008-08-15
GenBank Submission: FJ631804
> BO10560.complete
GAAGTTATCAGTCGACATGTCGAGCGATTCGAGTCGAAGGATCCAGGTGC
CCGAGGAGCTGAAGGAGGTGCTGCTGCAGTTCTCGATCTCCTTTCTGGTG
GAACAACCGCCGGATGTGATCGATTACGCTGTGGAGTACTTCACCAAACT
GCAGTCGGAACGCCCGAGCGTCTCTCACACGGATCAAAGCACCGATGACC
AGCTGAGCGTCAACTCACAGGATGCCGATGCGGAACCACCAGTGATGGCC
AGCTCGCGTCGCAAATCAGTTTTCGCCGAGGCCTACGATCCGGAGGCGGA
TGACGACGATGATGGCGCCACCGCCGTGTTCCCCAAGACAGATGAGCAGC
GCGCCCGGCTGGTCGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTC
GAGAAGGAGCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGAAAGGT
TCAGCCGGGTGACTTTATCATCCGCCAGGGTGACGACGGCGATAACTTTT
ATGTTATTGAATCTGGCGTCTACAAAGTCTATATTAATGACAAGCACATT
AACACCTACAATCACACTGGACTCTTCGGTGAATTAGCGCTGCTCTACAA
TATGCCCAGAGCGGCCACCGTGCAGGCGGAAACGAGTGGTCTACTTTGGG
CCATGGATCGCCAGACCTTCCGCCGCATCCTCTTGAAGTCGGCCTTCAGG
AAGCGGAAAATGTACGAGGAGCTGTTGAACAGCGTGCCCATGCTGAAGGC
CTTGCAGAACTACGAACGCATGAATCTGGCGGATGCCTTGGTTTCGAAGA
GCTACGACAATGGCGAACGCATCATCAAACAGGGTGACGCCGCCGACGGC
ATGTACTTCATTGAGGAGGGAACGGTGTCCGTGCGCATGGACCAGGACGA
CGCCGAGGTGGAGATCTCCCAGCTGGGCAAGGGACAGTACTTCGGCGAGC
TGGCGCTGGTGACACATCGACCCCGGGCAGCATCCGTCTACGCCACGGGC
GGCGTCGTCAAGCTAGCATTCCTCGATGTCAAGGCCTTTGAGCGTTTGCT
GGGTCCCTGCATGGATATTATGAAGCGCAACATTGACGACTACGAGTCGC
AGTTGGTGAAGATATTCGGCAGCAAAAACAATATCACCGATACACGAGCA
AGCTTTCTAGACCAT
BO10560.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:38:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pka-R2-RB | 1134 | CG15862-PB | 1..1131 | 17..1147 | 5655 | 100 | Plus |
Pka-R2-RA | 1134 | CG15862-PA | 1..1131 | 17..1147 | 5655 | 100 | Plus |
Pka-R2-RE | 1131 | CG15862-PE | 1..1013 | 17..1029 | 5050 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pka-R2-RB | 4108 | CG15862-RB | 374..1504 | 17..1147 | 5655 | 100 | Plus |
Pka-R2-RA | 2157 | CG15862-RA | 353..1483 | 17..1147 | 5655 | 100 | Plus |
Pka-R2-RE | 2102 | CG15862-RE | 510..1522 | 17..1029 | 5050 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:38:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10005157..10005370 | 230..17 | 1070 | 100 | Minus |
2R | 25286936 | 2R | 9997704..9997890 | 1019..833 | 935 | 100 | Minus |
2R | 25286936 | 2R | 9999734..9999916 | 412..230 | 915 | 100 | Minus |
2R | 25286936 | 2R | 9998415..9998564 | 757..608 | 750 | 100 | Minus |
2R | 25286936 | 2R | 9996494..9996621 | 1147..1020 | 640 | 100 | Minus |
2R | 25286936 | 2R | 9999425..9999529 | 513..409 | 525 | 100 | Minus |
2R | 25286936 | 2R | 9998707..9998802 | 609..514 | 480 | 100 | Minus |
2R | 25286936 | 2R | 9998269..9998349 | 835..755 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:38:03 has no hits.
BO10560.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:55:35 Download gff for
BO10560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pka-R2-RC | 292..1425 | 17..1151 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:42 Download gff for
BO10560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pka-R2-RA | 353..1483 | 17..1149 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:51 Download gff for
BO10560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pka-R2-RC | 292..1422 | 17..1149 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:59 Download gff for
BO10560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pka-R2-RA | 353..1483 | 17..1149 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:59 Download gff for
BO10560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9996492..9996621 | 1020..1149 | 98 | <- | Minus |
2R | 9997704..9997889 | 834..1019 | 100 | <- | Minus |
2R | 9998271..9998346 | 758..833 | 100 | <- | Minus |
2R | 9998415..9998562 | 610..757 | 100 | <- | Minus |
2R | 9998707..9998802 | 514..609 | 100 | <- | Minus |
2R | 9999425..9999525 | 413..513 | 100 | <- | Minus |
2R | 9999734..9999915 | 231..412 | 100 | <- | Minus |
2R | 10005157..10005370 | 17..230 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:42 Download gff for
BO10560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5892662..5892875 | 17..230 | 100 | | Minus |
arm_2R | 5883997..5884126 | 1020..1149 | 98 | <- | Minus |
arm_2R | 5885209..5885394 | 834..1019 | 100 | <- | Minus |
arm_2R | 5885776..5885851 | 758..833 | 100 | <- | Minus |
arm_2R | 5885920..5886067 | 610..757 | 100 | <- | Minus |
arm_2R | 5886212..5886307 | 514..609 | 100 | <- | Minus |
arm_2R | 5886930..5887030 | 413..513 | 100 | <- | Minus |
arm_2R | 5887239..5887420 | 231..412 | 100 | <- | Minus |
BO10560.pep Sequence
Translation from 16 to 1165
> BO10560.pep
MSSDSSRRIQVPEELKEVLLQFSISFLVEQPPDVIDYAVEYFTKLQSERP
SVSHTDQSTDDQLSVNSQDADAEPPVMASSRRKSVFAEAYDPEADDDDDG
ATAVFPKTDEQRARLVESVKNVLLFRSLEKEQMNQVLDAMFERKVQPGDF
IIRQGDDGDNFYVIESGVYKVYINDKHINTYNHTGLFGELALLYNMPRAA
TVQAETSGLLWAMDRQTFRRILLKSAFRKRKMYEELLNSVPMLKALQNYE
RMNLADALVSKSYDNGERIIKQGDAADGMYFIEEGTVSVRMDQDDAEVEI
SQLGKGQYFGELALVTHRPRAASVYATGGVVKLAFLDVKAFERLLGPCMD
IMKRNIDDYESQLVKIFGSKNNITDTRASFLDH
BO10560.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:35:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pka-R2-PB | 377 | CG15862-PB | 1..377 | 1..377 | 1911 | 100 | Plus |
Pka-R2-PA | 377 | CG15862-PA | 1..377 | 1..377 | 1911 | 100 | Plus |
Pka-R2-PD | 373 | CG15862-PD | 1..373 | 1..373 | 1769 | 93.8 | Plus |
Pka-R2-PE | 376 | CG15862-PE | 1..372 | 1..369 | 1758 | 94.4 | Plus |
Pka-R1-PAC | 377 | CG42341-PAC | 26..371 | 15..361 | 637 | 41.2 | Plus |