Clone BO10560 Report

Search the DGRC for BO10560

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:105
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptPka-R2-RA
Protein status:BO10560.pep: Imported from assembly
Sequenced Size:1165

Clone Sequence Records

BO10560.5prime Sequence

531 bp (278 high quality bases) assembled on 2006-04-19

> BO10560.5prime
GAAGTTATCAGTCGACATGTCGAGCGATTCGAGTCGAAGGATCCAGGTGC
CCGAGGAGCTGAAGGAGGTGCTGCTGCAGTTCTCGATCTCCTTTCTGGTG
GAACAACCGCCGGATGTGATCGATTACGCTGTGGAGTACTTCACCAAACT
GCAGTCGGAACGCCCGAGCGTCTCTCACACGGATCAAAGCACCGATGACC
AGCTGAGCGTCAACTCACAGGATGCCGATGCGGAACCACCAGTGATGGCC
AGCTCGCGTCGCANATCAGTTTTCGCCGAGGCCTACGATCCGGAGGCGGA
TGACGACGATGATGGCGCCACCGCCGTGTTCCCCCAAGACAGATGAGCAG
CGCGCCCGGCTGGGTCGAGTCGGTGAAGAACGTCCTCCTCTTTCCGATCC
CCTCGAGAAGGAGCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGAA
AGGTTCAGCCGGGTGACTTTATCATCCGCCAGGGTGACAACGGCGATAAC
TTTTTATGTTATTGAATCTGGCGTCTACAAA

BO10560.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG15862-PA 1134 Pka-R2-RA 1..318 17..334 1571 99.6 Plus
CG15862-PB 1134 Pka-R2-RB 1..318 17..334 1571 99.6 Plus
CG15862-PC 1134 Pka-R2-RC 1..318 17..334 1571 99.6 Plus
CG15862-PA 1134 Pka-R2-RA 380..484 400..504 500 99 Plus
CG15862-PB 1134 Pka-R2-RB 380..484 400..504 500 99 Plus
CG15862-PC 1134 Pka-R2-RC 380..484 400..504 500 99 Plus
CG15862-PA 1134 Pka-R2-RA 315..346 332..363 160 100 Plus
CG15862-PB 1134 Pka-R2-RB 315..346 332..363 160 100 Plus
CG15862-PC 1134 Pka-R2-RC 315..346 332..363 160 100 Plus
CG15862-PA 1134 Pka-R2-RA 481..510 502..531 150 100 Plus
CG15862-PA 1134 Pka-R2-RA 345..374 363..392 150 100 Plus
CG15862-PB 1134 Pka-R2-RB 345..374 363..392 150 100 Plus
CG15862-PB 1134 Pka-R2-RB 481..510 502..531 150 100 Plus
CG15862-PC 1134 Pka-R2-RC 345..374 363..392 150 100 Plus
CG15862-PC 1134 Pka-R2-RC 481..510 502..531 150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
Pka-R2-RE 2102 CG15862-RE 510..1019 17..531 2424 98.6 Plus
Pka-R2-RD 1614 CG15862-RD 353..862 17..531 2424 98.6 Plus
Pka-R2-RB 4108 CG15862-RB 374..883 17..531 2424 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10005157..10005370 230..17 1070 100 Minus
2R 25286936 2R 9999734..9999916 416..230 724 97.3 Minus
2R 25286936 2R 9999425..9999529 518..413 465 98.1 Minus
Blast to na_te.dros performed on 2015-02-11 09:35:45 has no hits.

BO10560.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:42:53 Download gff for BO10560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15862-PA 1..507 17..528 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:57:51 Download gff for BO10560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15862-PA 1..507 17..528 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:51:01 Download gff for BO10560.5prime
Subject Subject Range Query Range Percent Splice Strand
Pka-R2-RB 374..880 17..528 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:09:34 Download gff for BO10560.5prime
Subject Subject Range Query Range Percent Splice Strand
Pka-R2-RB 374..880 17..528 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:34 Download gff for BO10560.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9999425..9999525 417..518 98 <- Minus
2R 9999734..9999915 231..416 97 <- Minus
2R 10005157..10005370 17..230 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:51:01 Download gff for BO10560.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5886930..5887030 417..518 98 <- Minus
arm_2R 5887239..5887420 231..416 97 <- Minus
arm_2R 5892662..5892875 17..230 100   Minus

BO10560.complete Sequence

1165 bp assembled on 2008-08-15

GenBank Submission: FJ631804

> BO10560.complete
GAAGTTATCAGTCGACATGTCGAGCGATTCGAGTCGAAGGATCCAGGTGC
CCGAGGAGCTGAAGGAGGTGCTGCTGCAGTTCTCGATCTCCTTTCTGGTG
GAACAACCGCCGGATGTGATCGATTACGCTGTGGAGTACTTCACCAAACT
GCAGTCGGAACGCCCGAGCGTCTCTCACACGGATCAAAGCACCGATGACC
AGCTGAGCGTCAACTCACAGGATGCCGATGCGGAACCACCAGTGATGGCC
AGCTCGCGTCGCAAATCAGTTTTCGCCGAGGCCTACGATCCGGAGGCGGA
TGACGACGATGATGGCGCCACCGCCGTGTTCCCCAAGACAGATGAGCAGC
GCGCCCGGCTGGTCGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTC
GAGAAGGAGCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGAAAGGT
TCAGCCGGGTGACTTTATCATCCGCCAGGGTGACGACGGCGATAACTTTT
ATGTTATTGAATCTGGCGTCTACAAAGTCTATATTAATGACAAGCACATT
AACACCTACAATCACACTGGACTCTTCGGTGAATTAGCGCTGCTCTACAA
TATGCCCAGAGCGGCCACCGTGCAGGCGGAAACGAGTGGTCTACTTTGGG
CCATGGATCGCCAGACCTTCCGCCGCATCCTCTTGAAGTCGGCCTTCAGG
AAGCGGAAAATGTACGAGGAGCTGTTGAACAGCGTGCCCATGCTGAAGGC
CTTGCAGAACTACGAACGCATGAATCTGGCGGATGCCTTGGTTTCGAAGA
GCTACGACAATGGCGAACGCATCATCAAACAGGGTGACGCCGCCGACGGC
ATGTACTTCATTGAGGAGGGAACGGTGTCCGTGCGCATGGACCAGGACGA
CGCCGAGGTGGAGATCTCCCAGCTGGGCAAGGGACAGTACTTCGGCGAGC
TGGCGCTGGTGACACATCGACCCCGGGCAGCATCCGTCTACGCCACGGGC
GGCGTCGTCAAGCTAGCATTCCTCGATGTCAAGGCCTTTGAGCGTTTGCT
GGGTCCCTGCATGGATATTATGAAGCGCAACATTGACGACTACGAGTCGC
AGTTGGTGAAGATATTCGGCAGCAAAAACAATATCACCGATACACGAGCA
AGCTTTCTAGACCAT

BO10560.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
Pka-R2-RB 1134 CG15862-PB 1..1131 17..1147 5655 100 Plus
Pka-R2-RA 1134 CG15862-PA 1..1131 17..1147 5655 100 Plus
Pka-R2-RE 1131 CG15862-PE 1..1013 17..1029 5050 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
Pka-R2-RB 4108 CG15862-RB 374..1504 17..1147 5655 100 Plus
Pka-R2-RA 2157 CG15862-RA 353..1483 17..1147 5655 100 Plus
Pka-R2-RE 2102 CG15862-RE 510..1522 17..1029 5050 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10005157..10005370 230..17 1070 100 Minus
2R 25286936 2R 9997704..9997890 1019..833 935 100 Minus
2R 25286936 2R 9999734..9999916 412..230 915 100 Minus
2R 25286936 2R 9998415..9998564 757..608 750 100 Minus
2R 25286936 2R 9996494..9996621 1147..1020 640 100 Minus
2R 25286936 2R 9999425..9999529 513..409 525 100 Minus
2R 25286936 2R 9998707..9998802 609..514 480 100 Minus
2R 25286936 2R 9998269..9998349 835..755 405 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:38:03 has no hits.

BO10560.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:55:35 Download gff for BO10560.complete
Subject Subject Range Query Range Percent Splice Strand
Pka-R2-RC 292..1425 17..1151 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:42 Download gff for BO10560.complete
Subject Subject Range Query Range Percent Splice Strand
Pka-R2-RA 353..1483 17..1149 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:51 Download gff for BO10560.complete
Subject Subject Range Query Range Percent Splice Strand
Pka-R2-RC 292..1422 17..1149 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:59 Download gff for BO10560.complete
Subject Subject Range Query Range Percent Splice Strand
Pka-R2-RA 353..1483 17..1149 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:59 Download gff for BO10560.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9996492..9996621 1020..1149 98 <- Minus
2R 9997704..9997889 834..1019 100 <- Minus
2R 9998271..9998346 758..833 100 <- Minus
2R 9998415..9998562 610..757 100 <- Minus
2R 9998707..9998802 514..609 100 <- Minus
2R 9999425..9999525 413..513 100 <- Minus
2R 9999734..9999915 231..412 100 <- Minus
2R 10005157..10005370 17..230 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:42 Download gff for BO10560.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5892662..5892875 17..230 100   Minus
arm_2R 5883997..5884126 1020..1149 98 <- Minus
arm_2R 5885209..5885394 834..1019 100 <- Minus
arm_2R 5885776..5885851 758..833 100 <- Minus
arm_2R 5885920..5886067 610..757 100 <- Minus
arm_2R 5886212..5886307 514..609 100 <- Minus
arm_2R 5886930..5887030 413..513 100 <- Minus
arm_2R 5887239..5887420 231..412 100 <- Minus

BO10560.pep Sequence

Translation from 16 to 1165

> BO10560.pep
MSSDSSRRIQVPEELKEVLLQFSISFLVEQPPDVIDYAVEYFTKLQSERP
SVSHTDQSTDDQLSVNSQDADAEPPVMASSRRKSVFAEAYDPEADDDDDG
ATAVFPKTDEQRARLVESVKNVLLFRSLEKEQMNQVLDAMFERKVQPGDF
IIRQGDDGDNFYVIESGVYKVYINDKHINTYNHTGLFGELALLYNMPRAA
TVQAETSGLLWAMDRQTFRRILLKSAFRKRKMYEELLNSVPMLKALQNYE
RMNLADALVSKSYDNGERIIKQGDAADGMYFIEEGTVSVRMDQDDAEVEI
SQLGKGQYFGELALVTHRPRAASVYATGGVVKLAFLDVKAFERLLGPCMD
IMKRNIDDYESQLVKIFGSKNNITDTRASFLDH

BO10560.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
Pka-R2-PB 377 CG15862-PB 1..377 1..377 1911 100 Plus
Pka-R2-PA 377 CG15862-PA 1..377 1..377 1911 100 Plus
Pka-R2-PD 373 CG15862-PD 1..373 1..373 1769 93.8 Plus
Pka-R2-PE 376 CG15862-PE 1..372 1..369 1758 94.4 Plus
Pka-R1-PAC 377 CG42341-PAC 26..371 15..361 637 41.2 Plus