BO10565.complete Sequence
1975 bp assembled on 2007-10-25
GenBank Submission: FJ631805
> BO10565.complete
GAAGTTATCAGTCGACATGATGCAGGCGCTGACGATGCGGAGTTGGCTGG
CAACGCTGGTGACGGCGCTGCTGGCGGTGGCCATCTGGCCGGATCCGGGA
CAGAGTCTGCCGCAAGGTGCTCCGGAAACCGTGTGCGACACCATGCTGCC
GTTCCACTCCGGCGGCAGTGTGCTACCCCAGAACAGTGTGTCGCCCTTCA
GCGTGGAGACCTCTTCCTCGACACTTGGCCAGGGTCAGACGCTTCGCGTG
GATCTGACGGGTGTGCCGGCGGGCTTAAGCTTCGGTGGCTACATGATCCA
GGCGCGCAATCGGAATCCACCCCATCAGATCATCGGACAATTTGGACCCG
CCCGCGATGGCACCATTAAGCTAATGAACTGCGAGAACTCCGTGAATAAT
TCAGCCACGCATAGCAATGCGGGACCCAAGCAGCAGGTTATCCTGGAGTG
GCAATCACCAGTGGACTTTCTCGGCCAGGTGGTCTTCAATGCCACCATTG
CCCAGAGCTACAATGAATTCTGGGTGGGCGTGCCATCTCAGCCCGTTCAG
ATAGTCCGTCGCGATCTGTCCGCTGCTCCACCACTACCCACACAGAGTCC
ATCTGCCCCTGCGGGCACCACCCGTGCTCCCTATGTGCCGCCCAGCTATG
TGGCGCCAAACAACGTGGTTGCCGTTTCCTCGGATCCCATCTACAATGGC
TGCGGACAGAGCAAGAACTGTTTTGGATTCCCCGACGGTTGCGTGGCGAC
GAAGAGCTGTACCTCCATCACTGTGGTCACGGTGCGTGGAGATGTCTTCG
AGTTTGAGATTCAGTCCGGCAAGGGAACCAATGCTGCTTACGTGGCAGTT
GGTCTTTCTGATGACGCCAAGATGGGTGACGACTTGACCACCGAATGTGT
GCCAGAGAATGGCCGGGTTAACCTGTATTCCTCCTTGACTTCGGCCTCTC
CTTACTCGGCAGTGAGATCCAATGTGAACCAGAACTCTGCCCGCCTGCTG
GACGCCTCCATTGTGGATGGAGTGATCTACTGCCGTGTGCAAAGGGATGC
AGTGACCAATGTGCAGGGACGCACTTTTGATCTTCGCAATGGCAAGTACC
ATCTGCTGGTGGCATCCGGCAGCAGCCTTAAGGAGAACAGCGTGGGCTAC
CACGACATTGGACGCCTGCCCTCGGCGCAACCGATCAATCTGGCGGAGGT
GCAAGACCTGAGTGGTTCTAGCAGACTGCTCATCCAGCTCCACGGTGCCT
TCATGATTGCCGCATGGATTGGAACCACCTCGCTGGGCATCATCTTTGCG
CGCTACTTCAAGCAGACGTGGGTGGGCAGCCAGAGCTGCGGCACGGATCA
ATGGTTCGCCTGGCATCGCCTCCTCATGGTCACCACCTGGTCGCTTACGG
TGGCCGCTTACGTACTCATCTGGGTGGAGCTGAAGCAGGCTGTGTGGCAT
GCCCATTCGATAATCGGTCTGATCACGGTGATATTGTGCTTCATTCAACC
CATTGGAGCTCTGTTCCGACCGGGACCCAATGACAAGAAGCGGCCATACT
TCAACTGGGGTCATTGGCTGGGCGGTAACCTGGCCCATATTCTGGGAATT
GTTACCATCTTCTTTTCTGTAAAACTACCAAAGGCCGAGCTGCCCGAGTG
GATGGACTGGATCCTGGTCAGCTTCGTGGTGGTGCATGTACTCGTCCACC
TGATATTCTCCATTGGCGGCATGGCCTCGGAGCGTCATCTCAGCCAGCGG
GCGAACACTTTCCAAATGGGCGACATGTCCCATCATCAGCAGCACGCCAT
GCGGAATGGCATGAGCATGGAGCGGAAGATGGATGCCCCGTATGCGGGCA
TGCGCAAGGGATTGCTCGGAGTTTACGGCGTGGTGCTGATTCTCTTCGTG
ACGGTGCTGATCCTGTTGGTGGTGCTGGCGCCCATCGAACAATTCCTGGG
AAAGTCCGCAAGCTTTCTAGACCAT
BO10565.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:52:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8399-RA | 1944 | CG8399-PA | 1..1941 | 17..1957 | 9690 | 99.9 | Plus |
| CG8399-RB | 1971 | CG8399-PB | 1..1701 | 17..1717 | 8475 | 99.9 | Plus |
| CG8399-RB | 1971 | CG8399-PB | 1723..1968 | 1712..1957 | 1230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8399-RA | 2315 | CG8399-RA | 137..2077 | 17..1957 | 9690 | 99.9 | Plus |
| CG8399-RB | 2342 | CG8399-RB | 137..1837 | 17..1717 | 8475 | 99.9 | Plus |
| CG8399-RB | 2342 | CG8399-RB | 1859..2104 | 1712..1957 | 1230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16023065..16023687 | 976..1598 | 3115 | 100 | Plus |
| 2R | 25286936 | 2R | 16021904..16022376 | 17..489 | 2350 | 99.8 | Plus |
| 2R | 25286936 | 2R | 16022444..16022779 | 490..825 | 1680 | 100 | Plus |
| 2R | 25286936 | 2R | 16022837..16022989 | 824..976 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 16024086..16024214 | 1712..1840 | 645 | 100 | Plus |
| 2R | 25286936 | 2R | 16024272..16024389 | 1840..1957 | 590 | 100 | Plus |
| 2R | 25286936 | 2R | 16023747..16023859 | 1599..1711 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:52:18 has no hits.
BO10565.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:14 Download gff for
BO10565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8399-RA | 1..1944 | 17..1958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:43 Download gff for
BO10565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8399-RA | 129..2080 | 8..1963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:04 Download gff for
BO10565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8399-RA | 137..2077 | 17..1959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:48 Download gff for
BO10565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8399-RA | 135..2075 | 17..1959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:35 Download gff for
BO10565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8399-RA | 137..2077 | 17..1959 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:35 Download gff for
BO10565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16022444..16022778 | 490..824 | 100 | -> | Plus |
| 2R | 16022838..16022989 | 825..976 | 100 | -> | Plus |
| 2R | 16021904..16022376 | 17..489 | 99 | -> | Plus |
| 2R | 16023066..16023687 | 977..1598 | 100 | -> | Plus |
| 2R | 16023747..16023859 | 1599..1711 | 100 | -> | Plus |
| 2R | 16024086..16024214 | 1712..1840 | 100 | -> | Plus |
| 2R | 16024273..16024389 | 1841..1959 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:04 Download gff for
BO10565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11909409..11909881 | 17..489 | 99 | -> | Plus |
| arm_2R | 11909949..11910283 | 490..824 | 100 | -> | Plus |
| arm_2R | 11910343..11910494 | 825..976 | 100 | -> | Plus |
| arm_2R | 11910571..11911192 | 977..1598 | 100 | -> | Plus |
| arm_2R | 11911252..11911364 | 1599..1711 | 100 | -> | Plus |
| arm_2R | 11911591..11911719 | 1712..1840 | 100 | -> | Plus |
| arm_2R | 11911778..11911894 | 1841..1959 | 98 | | Plus |
BO10565.pep Sequence
Translation from 16 to 1975
> BO10565.pep
MMQALTMRSWLATLVTALLAVAIWPDPGQSLPQGAPETVCDTMLPFHSGG
SVLPQNSVSPFSVETSSSTLGQGQTLRVDLTGVPAGLSFGGYMIQARNRN
PPHQIIGQFGPARDGTIKLMNCENSVNNSATHSNAGPKQQVILEWQSPVD
FLGQVVFNATIAQSYNEFWVGVPSQPVQIVRRDLSAAPPLPTQSPSAPAG
TTRAPYVPPSYVAPNNVVAVSSDPIYNGCGQSKNCFGFPDGCVATKSCTS
ITVVTVRGDVFEFEIQSGKGTNAAYVAVGLSDDAKMGDDLTTECVPENGR
VNLYSSLTSASPYSAVRSNVNQNSARLLDASIVDGVIYCRVQRDAVTNVQ
GRTFDLRNGKYHLLVASGSSLKENSVGYHDIGRLPSAQPINLAEVQDLSG
SSRLLIQLHGAFMIAAWIGTTSLGIIFARYFKQTWVGSQSCGTDQWFAWH
RLLMVTTWSLTVAAYVLIWVELKQAVWHAHSIIGLITVILCFIQPIGALF
RPGPNDKKRPYFNWGHWLGGNLAHILGIVTIFFSVKLPKAELPEWMDWIL
VSFVVVHVLVHLIFSIGGMASERHLSQRANTFQMGDMSHHQQHAMRNGMS
MERKMDAPYAGMRKGLLGVYGVVLILFVTVLILLVVLAPIEQFLGKSASF
LDH
BO10565.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8399-PA | 647 | CG8399-PA | 1..647 | 1..647 | 3391 | 100 | Plus |
| CG8399-PB | 656 | CG8399-PB | 1..656 | 1..647 | 3371 | 98.6 | Plus |
