Clone Sequence Records
BO10567.complete Sequence
2566 bp assembled on 2010-02-17
GenBank Submission: KX798162
> BO10567.complete
GAAGTTATCAGTCGACATGGAAACGCCTGCATATGCCACGAAATCTGGCG
GAGAACTGGTGCTGCCCGAAGCTCTGGAGGACTTGATGGATTTGGAAGAC
CAGGACGCGGGCGGGATGAAGTCCAACGTTAAGGATAAATCCATGGATTT
GGATATCTATCACGATTTGTACGATATAGAGCCTGCAGGTTCAAAGAAGC
CTGACCAAATGGACAGATCCCTTGAACTGGACATCTACGATGATTTGGAC
GACTTTCAGAAGGCCGAAGATCGTAATACCAAGGAGCTACAGGCATGGGA
AGCCAAATACGAAAAGGCACTGGCCGAAATTGAAGCGCTAAAGGTTGAGA
ATAAGGCACTTGGCAAGAAGATAAAAACCATGGAGGTTAATCTACAGAAT
CTACTGGACACAGCTAAGGCGGAGGTAAAGAGAAAAGAGACACTGATTGC
CGAGCTGCGAAACGAAAAGGACGATGTATGCTTCCGACGAAAACGAGCAC
GGGCGTTTGACGTACCAGGTGCAAGGGAACCCGAAAGTAAGCGTCCGAAA
GAATTTCAATCTACACCAATCGATGTCAGGAAATATCCGGAAACGAATAG
AAATCCGTTCAAAACGGCTGCAAAGGACGCCGCTAAGGATGATGCTAGGA
AGATGATGACCAAAAAAGATGACACAACGAAAGTCGTATCAAAAGATGTT
GAAAGAGGCGTAAAATCCAAGGAGGATAATAAGATGGCGACCAATAAAGA
TGATGACAAGAAGTCATCCTCAAAGGATGATGCTTGGAAATCTAGGACAA
GAGAAGACGCCAAGAAATCGGTCCAAAGAAGCAAGTCTCCCAGGCCGGAA
CACTCAAAGACCACCGATCGGAAATCTACTGCACAGGCTCGTCGTCCAGA
TCCACATCGCAGCCGGAGTCCAAAACATAATTCCCGGCGAGATCATCACA
GGAATCAAGAAAGCAGTTCCCGGCACGCCAAACGGCGAAGCCAATCCGCA
TCGCCCAGCAAGATACAATTGCCAAGAGAAAAAGCAAATGCCATCATCAC
ACTTACTGACGATGAAACAAATGACCAACGCAGCAAGAGCCCAGTCCCCG
TGACCGTCAAACTCGTAACTGAATCTCAACCGGCTGAAAAAGTCGTTTCC
AACCGAAGGGATGCTGCTTTAGAAACCAATGCAAATTCCTCAAAGGAATC
AAAAGTAGAGACGAAGGATATTACTCAACCGACAAATGGTTTAATTGCTG
AACCTTGTATTCCAAAACATGAGATTATTCCGGGGTTAAGCTTAATTAAC
CCAGAATCGGCGGATTTTTCTAAAAATGAGATCAAGTTAGATCCTGTAAT
CTTACAGGATCGTACAGAAGACTCTGGCCACCAACTTTTAAATAAGGAGC
CTATTCCCAAAGTTGTAGTACTTGAAAAATGTAAAAACATTTTAGCTGAA
GATTGCCCAGCTGATGAGCAACCCCTGGACAAATTCAAGGATGGAAAAGA
ATCTGAAGAGACACAGGCAAAGTTAGACAAAAAAGAGCCTTTTGCAGTTG
AAACTGCTGTTGAAACTCCTAGCAAAGAAGAAAGCAACGACAACATAGTA
TTATCAAAGAATACGACGTCTCAAGCTGATGTGTGTTCTCAGCATGATGA
GAATGATGAAGCAGAGATCCGAGAACCGATGGATCAAGTTAACTCCGTGG
TCGAGTCCGACTTGGGAGTAAGGATTATTGAGGATATTCGGTTGCCCAAG
ATGGCGAATATCGACCATTTTGCTGTAAAGGTCGACAACCATGGTGAAGC
GCCAGCAGCTGTCACAGATTCCGCTTTAAATCAAGAGAACCTAGCCACAC
AGGACCAAAAGATTTGCGCAGAGATGAAAGATCCAACTATTTTTACCACC
TCGGACGAAACTCCAATAAAGTCTGCTACTATATTATACGCCAAGCCCGA
TTCAACAAAACTGGATCACAGCGATGAACATGACGAGGTTATCCTGGAAA
CTGCCATTGACATGCTGAAGAAGGAGCAGGATGCAGCGAGCACCGCAGAA
TCCACATATCCGAAACTGCGGATCGCAGAAGATGCCATTGAGATGGCACT
AGAGCAATTGCACCAGCAGTCGCCGGACGAAACTGTGGTGACCTCAACGT
CGAATAGAGCGCCGCAGACGCCAAAAAGCCTCATCACAATACTCACCCAG
ACTCCAAAACAGGCTGATCCACTAAGATCCCAAACGAAATCGAAGACTGT
GTCGCCGATGGCGACGCCTAAGAAGACGGCCACGGAGAAGACCCCAGTGA
AGAAGAGAAAGGTCAACATGGATAGTTCGCCGCAGGTGCCAGCCCATGAT
GTTACCATCGACGAAACTTTGGGTGCCTGCAGTCTGCAGGACGAGAGCTC
AACTGTGACCAAACGCTGCTCCCTGGGCCACACAGACTACCAGTACGAAC
AGATAAAGGACGAGGTCATTTTAAGAGTGAAACGACGGGGTCGCCGACGA
AAGCCAACACCTATGGAAATACCTACGACTGCTGCGGACAAACCAATTGC
AAGCTTTCTAGACCAT
BO10567.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:14:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FLASH-RB | 2535 | CG4616-PB | 1..2532 | 17..2548 | 12660 | 100 | Plus |
FLASH-RA | 2535 | CG4616-PA | 1..2532 | 17..2548 | 12660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FLASH-RB | 3486 | CG4616-RB | 278..2809 | 17..2548 | 12660 | 100 | Plus |
FLASH-RA | 2830 | CG4616-RA | 273..2804 | 17..2548 | 12660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13208251..13209792 | 1007..2548 | 7710 | 100 | Plus |
2R | 25286936 | 2R | 13207651..13208193 | 466..1008 | 2715 | 100 | Plus |
2R | 25286936 | 2R | 13207092..13207349 | 17..274 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 13207406..13207596 | 275..465 | 955 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:14:48 has no hits.
BO10567.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-17 09:38:11 Download gff for
BO10567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4616-RB | 267..2798 | 17..2550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:01 Download gff for
BO10567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FLASH-RA | 273..2804 | 17..2550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:03 Download gff for
BO10567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FLASH-RA | 273..2804 | 17..2550 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:03 Download gff for
BO10567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13207406..13207596 | 275..465 | 100 | -> | Plus |
2R | 13207092..13207349 | 17..274 | 100 | -> | Plus |
2R | 13207651..13208193 | 466..1008 | 100 | -> | Plus |
2R | 13208253..13209792 | 1009..2550 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:01 Download gff for
BO10567.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9094597..9094854 | 17..274 | 100 | -> | Plus |
arm_2R | 9094911..9095101 | 275..465 | 100 | -> | Plus |
arm_2R | 9095156..9095698 | 466..1008 | 100 | -> | Plus |
arm_2R | 9095758..9097297 | 1009..2550 | 99 | | Plus |
BO10567.5prime Sequence
723 bp (619 high quality bases) assembled on 2006-04-19
> BO10567.5prime
GAAGTTATCAGTCGACATGGAAACGCCTGCATATGCCACGAAATCTGGCG
GAGAACTGGTGCTGCCCGAAGCTCTGGAGGACTTGATGGATTTGGAAGAC
CAGGACGCGGGCGGGATGAAGTCCAACGTTAAGGATAAATCCATGGATTT
GGATATCTATCACGATTTGTACGATATAGAGCCTGCAGGTTCAAAGAAGC
CTGACCAAATGGACAGATCCCTTGAACTGGACATCTACGATGATTTGGAC
GACTTTCAGAAGGCCGAAGATCGTAATACCAAGGAGCTACAGGCATGGGA
AGCCAAATACGAAAAGGCACTGGCCGAAATTGAAGCGCTAAAGGTTGAGA
ATAAGGCACTTGGCAAGAAGATAAAAACCATGGAGGTTAATCTACAGAAT
CTACTGGACACAGCTAAGGCGGAGGTAAAGAGAAAAGAGACACTGATTGC
CGAGCTGCGAAACGAAAAGGACGATGTATGCTTCCGACGAAAACGAGCAC
GGGCGTTTGACGTACCAGGTGCAAGGGAACCCGAAAGTAAGCGTCCGAAA
GAATTTCAATCTACACCAATCGATGTCAGGAAATATCCGGAAACGAATAG
AAATCCGTTCAAAACGGCTGCAAAGGACGCCGCTAAGGATGATGCTAGGA
AGATGATGACCAAAAAAGATGACACAACGAAAGTCGTATCAAAAGATGTT
GAAAGAGGCGTAAAATCCAAGGA
BO10567.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:05:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4616-PA | 2535 | CG4616-RA | 1..707 | 17..723 | 3535 | 100 | Plus |
CG4616-PB | 2535 | CG4616-RB | 1..707 | 17..723 | 3535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FLASH-RB | 3486 | CG4616-RB | 278..984 | 17..723 | 3535 | 100 | Plus |
FLASH-RA | 2830 | CG4616-RA | 273..979 | 17..723 | 3535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13207092..13207349 | 17..274 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 13207651..13207908 | 466..723 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 13207406..13207596 | 275..465 | 955 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:42:47 has no hits.
BO10567.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:43:00 Download gff for
BO10567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4616-PA | 1..706 | 17..722 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:57:58 Download gff for
BO10567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4616-PB | 1..706 | 17..722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:25:58 Download gff for
BO10567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FLASH-RA | 273..978 | 17..722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:18:00 Download gff for
BO10567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FLASH-RA | 273..978 | 17..722 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:18:00 Download gff for
BO10567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13207092..13207349 | 17..274 | 100 | -> | Plus |
2R | 13207406..13207596 | 275..465 | 100 | -> | Plus |
2R | 13207651..13207907 | 466..722 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:25:58 Download gff for
BO10567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9094597..9094854 | 17..274 | 100 | -> | Plus |
arm_2R | 9094911..9095101 | 275..465 | 100 | -> | Plus |
arm_2R | 9095156..9095412 | 466..722 | 100 | | Plus |
BO10567.pep Sequence
Translation from 16 to 2566
> BO10567.pep
METPAYATKSGGELVLPEALEDLMDLEDQDAGGMKSNVKDKSMDLDIYHD
LYDIEPAGSKKPDQMDRSLELDIYDDLDDFQKAEDRNTKELQAWEAKYEK
ALAEIEALKVENKALGKKIKTMEVNLQNLLDTAKAEVKRKETLIAELRNE
KDDVCFRRKRARAFDVPGAREPESKRPKEFQSTPIDVRKYPETNRNPFKT
AAKDAAKDDARKMMTKKDDTTKVVSKDVERGVKSKEDNKMATNKDDDKKS
SSKDDAWKSRTREDAKKSVQRSKSPRPEHSKTTDRKSTAQARRPDPHRSR
SPKHNSRRDHHRNQESSSRHAKRRSQSASPSKIQLPREKANAIITLTDDE
TNDQRSKSPVPVTVKLVTESQPAEKVVSNRRDAALETNANSSKESKVETK
DITQPTNGLIAEPCIPKHEIIPGLSLINPESADFSKNEIKLDPVILQDRT
EDSGHQLLNKEPIPKVVVLEKCKNILAEDCPADEQPLDKFKDGKESEETQ
AKLDKKEPFAVETAVETPSKEESNDNIVLSKNTTSQADVCSQHDENDEAE
IREPMDQVNSVVESDLGVRIIEDIRLPKMANIDHFAVKVDNHGEAPAAVT
DSALNQENLATQDQKICAEMKDPTIFTTSDETPIKSATILYAKPDSTKLD
HSDEHDEVILETAIDMLKKEQDAASTAESTYPKLRIAEDAIEMALEQLHQ
QSPDETVVTSTSNRAPQTPKSLITILTQTPKQADPLRSQTKSKTVSPMAT
PKKTATEKTPVKKRKVNMDSSPQVPAHDVTIDETLGACSLQDESSTVTKR
CSLGHTDYQYEQIKDEVILRVKRRGRRRKPTPMEIPTTAADKPIASFLDH
BO10567.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:19:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FLASH-PB | 844 | CG4616-PB | 1..844 | 1..844 | 4305 | 100 | Plus |
FLASH-PA | 844 | CG4616-PA | 1..844 | 1..844 | 4305 | 100 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 3475..4287 | 25..798 | 206 | 19 | Plus |
Strn-Mlck-PV | 7944 | CG44162-PV | 3514..4326 | 25..798 | 206 | 19 | Plus |
Strn-Mlck-PS | 8216 | CG44162-PS | 3475..4287 | 25..798 | 206 | 19 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4320..5093 | 25..816 | 202 | 19.9 | Plus |
Strn-Mlck-PV | 7944 | CG44162-PV | 4359..5132 | 25..816 | 202 | 19.9 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4125..4844 | 25..770 | 201 | 19.7 | Plus |
Strn-Mlck-PV | 7944 | CG44162-PV | 4164..4883 | 25..770 | 201 | 19.7 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4515..5178 | 25..704 | 165 | 18.7 | Plus |
Strn-Mlck-PV | 7944 | CG44162-PV | 4554..5217 | 25..704 | 165 | 18.7 | Plus |