Clone BO10575 Report

Search the DGRC for BO10575

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:105
Well:75
Vector:pDNR-Dual
Associated Gene/Transcriptesc-RA
Protein status:BO10575.pep: Imported from assembly
Sequenced Size:1309

Clone Sequence Records

BO10575.complete Sequence

1309 bp assembled on 2010-02-17

GenBank Submission: KX794210

> BO10575.complete
GAAGTTATCAGTCGACATGAGCAGTGATAAAGTGAAAAACGGCAACGAGC
CCGAGGAGTCGGAGGAATCATGCGGCGATGAGTCGGCCAGCTATACCACC
AACAGCACCACCTCGCGCAGCAAGTCCCCGTCATCCAGCACGCGCAGCAA
GCGCCGCGGTCGCCGGAGCACCAAATCGAAGCCAAAAAGTCGCGCCGCCT
ACAAATACGACACCCACGTGAAGGAGAACCACGGAGCCAACATCTTCGGC
GTAGCCTTCAACACGCTGCTGGGCAAGGATGAGCCACAGGTCTTCGCTAC
GGCGGGCAGCAACCGGGTGACCGTCTACGAGTGCCCTCGACAGGGCGGGA
TGCAGCTGCTCCACTGCTATGCAGATCCGGATCCCGATGAAGTATTTTAC
ACCTGCGCCTGGTCGTACGACCTTAAGACCTCTTCACCTCTCCTGGCCGC
TGCTGGATACCGCGGAGTCATCCGGGTTATTGATGTCGAGCAGAATGAGG
CGGTGGGCAACTACATTGGCCATGGACAGGCCATTAACGAGCTGAAGTTC
CATCCGCACAAGCTACAGCTTTTGCTTTCGGGCAGCAAGGATCACGCGAT
AAGATTGTGGAACATCCAGAGCCATGTGTGCATTGCCATCCTGGGCGGAG
TGGAGGGACATCGCGATGAGGTGCTGTCCATCGACTTTAATATGCGTGGA
GATCGCATTGTGTCGAGCGGCATGGATCACTCGCTGAAGCTGTGGTGTCT
GAATACGCCCGAGTTCCATCACAAGATCGAACTGTCGAACACTTTCAGCC
AGGAGAAGTCAACGCTGCCTTTCCCCACGGTGACCAAGCACTTCCCCGAT
TTTTCAACGCGGGATATACACAGGAACTATGTGGACTGTGTGCAGTGGTT
CGGCAACTTTGTGCTCTCCAAGTCCTGCGAAAATGCCATTGTCTGCTGGA
AGCCGGGACAACTACATCAGAGTTTCGAGCAGGTGAAGCCGAGCGACTCC
TCCTGCACGATAATCGCGGAATTCGAGTACGATGAGTGCGAGATCTGGTT
CGTGAGATTCGGCTTCAATCCGTGGCAGAAGGTGATTGCCCTGGGCAATC
AGCAGGGCAAGGTGTATGTGTGGGAGCTGGATCCCAGCGATCCCGAGGGC
GCACACATGACCACCCTGCACAATTCGCGTAGCGTGGCCACTGTGCGCCA
GATCGCCTTCTCCCGCGATGCCAGCGTACTGGTCTACGTGTGCGATGACG
CCACCGTGTGGCGATGGAACCGCAGACAAACGACTTCCATCGCAAGCTTT
CTAGACCAT

BO10575.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
esc-RA 1278 CG14941-PA 1..1275 17..1291 6270 99.5 Plus
escl-RC 1389 CG5202-PC 616..1064 509..957 325 71.5 Plus
escl-RA 1389 CG5202-PA 616..1064 509..957 325 71.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
esc-RA 1704 CG14941-RA 166..1445 12..1291 6280 99.4 Plus
escl-RC 1532 CG5202-RC 662..1110 509..957 325 71.5 Plus
escl-RA 1809 CG5202-RA 662..1110 509..957 325 71.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11827463..11828371 1291..383 4440 99.2 Minus
2L 23513712 2L 11828736..11828907 382..211 860 100 Minus
2L 23513712 2L 11828970..11829103 210..77 670 100 Minus
2L 23513712 2L 11991701..11992149 509..957 325 71.5 Plus
2L 23513712 2L 11829175..11829240 77..12 315 98.5 Minus
Blast to na_te.dros performed on 2014-11-28 03:14:52 has no hits.

BO10575.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-17 09:38:13 Download gff for BO10575.complete
Subject Subject Range Query Range Percent Splice Strand
esc-RA 168..1442 17..1293 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:02 Download gff for BO10575.complete
Subject Subject Range Query Range Percent Splice Strand
esc-RA 171..1445 17..1293 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:04 Download gff for BO10575.complete
Subject Subject Range Query Range Percent Splice Strand
esc-RA 171..1445 17..1293 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:04 Download gff for BO10575.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11827460..11828371 383..1293 99 <- Minus
2L 11828736..11828907 211..382 100 <- Minus
2L 11828970..11829103 77..210 100 <- Minus
2L 11829176..11829235 17..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:02 Download gff for BO10575.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11827460..11828371 383..1293 99 <- Minus
arm_2L 11828736..11828907 211..382 100 <- Minus
arm_2L 11828970..11829103 77..210 100 <- Minus
arm_2L 11829176..11829235 17..76 100   Minus

BO10575.5prime Sequence

420 bp (349 high quality bases) assembled on 2006-04-19

> BO10575.5prime
GAAGTTATCAGTCGACATGAGCAGTGATAAAGTGAAAAACGGCAACGAGC
CCGAGGAGTCGGAGGAATCATGCGGCGATGAGTCGGCCAGCTATACCACC
AACAGCACCACCTCGCGCAGCAAGTCCCCGTCATCCAGCACGCGCAGCAA
GCGCCGCGGTCGCCGGAGCACCAAATCGAAGCCAAAAAGTCGCGCCGCCT
ACAAATACGACACCCACGTGAAGGAGAACCACGGAGCCAACATCTTCGGC
GTAGCCTTCAACACGCTGCTGGGCAAGGATGAGCCACAGGTCTTCGCTAC
GGCGGGCAGCAACCGGGTGACCGTCTACGAGTGCCCTCGACAGGGCGGGA
TGCAGCTGCTCCACTGCTATGCAGATCCGGATCCCGATGAAGTATTTTAC
ACCTGCGCCTGGTCGTACGA

BO10575.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14941-PA 1278 esc-RA 1..404 17..420 2020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
esc-RA 1704 CG14941-RA 166..574 12..420 2030 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11828736..11828907 382..211 860 100 Minus
2L 23513712 2L 11828970..11829103 210..77 670 100 Minus
2L 23513712 2L 11829175..11829240 77..12 315 98.5 Minus
2L 23513712 2L 11828334..11828371 420..383 190 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:26:35 has no hits.

BO10575.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:43:11 Download gff for BO10575.5prime
Subject Subject Range Query Range Percent Splice Strand
esc-PA 1..403 17..419 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:58:14 Download gff for BO10575.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14941-PA 1..403 17..419 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:34:19 Download gff for BO10575.5prime
Subject Subject Range Query Range Percent Splice Strand
esc-RA 166..573 12..419 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:59:37 Download gff for BO10575.5prime
Subject Subject Range Query Range Percent Splice Strand
esc-RA 166..573 12..419 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:59:37 Download gff for BO10575.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11828970..11829103 77..210 100 <- Minus
2L 11829176..11829240 12..76 98   Minus
2L 11828335..11828371 383..419 100 <- Minus
2L 11828736..11828907 211..382 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:34:19 Download gff for BO10575.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11828335..11828371 383..419 100 <- Minus
arm_2L 11828736..11828907 211..382 100 <- Minus
arm_2L 11828970..11829103 77..210 100 <- Minus
arm_2L 11829176..11829240 12..76 98   Minus

BO10575.pep Sequence

Translation from 16 to 1309

> BO10575.pep
MSSDKVKNGNEPEESEESCGDESASYTTNSTTSRSKSPSSSTRSKRRGRR
STKSKPKSRAAYKYDTHVKENHGANIFGVAFNTLLGKDEPQVFATAGSNR
VTVYECPRQGGMQLLHCYADPDPDEVFYTCAWSYDLKTSSPLLAAAGYRG
VIRVIDVEQNEAVGNYIGHGQAINELKFHPHKLQLLLSGSKDHAIRLWNI
QSHVCIAILGGVEGHRDEVLSIDFNMRGDRIVSSGMDHSLKLWCLNTPEF
HHKIELSNTFSQEKSTLPFPTVTKHFPDFSTRDIHRNYVDCVQWFGNFVL
SKSCENAIVCWKPGQLHQSFEQVKPSDSSCTIIAEFEYDECEIWFVRFGF
NPWQKVIALGNQQGKVYVWELDPSDPEGAHMTTLHNSRSVATVRQIAFSR
DASVLVYVCDDATVWRWNRRQTTSIASFLDH

BO10575.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
esc-PA 425 CG14941-PA 1..425 1..425 2291 100 Plus
escl-PC 462 CG5202-PC 35..460 2..419 1356 58.4 Plus
escl-PA 462 CG5202-PA 35..460 2..419 1356 58.4 Plus