Clone Sequence Records
BO10575.complete Sequence
1309 bp assembled on 2010-02-17
GenBank Submission: KX794210
> BO10575.complete
GAAGTTATCAGTCGACATGAGCAGTGATAAAGTGAAAAACGGCAACGAGC
CCGAGGAGTCGGAGGAATCATGCGGCGATGAGTCGGCCAGCTATACCACC
AACAGCACCACCTCGCGCAGCAAGTCCCCGTCATCCAGCACGCGCAGCAA
GCGCCGCGGTCGCCGGAGCACCAAATCGAAGCCAAAAAGTCGCGCCGCCT
ACAAATACGACACCCACGTGAAGGAGAACCACGGAGCCAACATCTTCGGC
GTAGCCTTCAACACGCTGCTGGGCAAGGATGAGCCACAGGTCTTCGCTAC
GGCGGGCAGCAACCGGGTGACCGTCTACGAGTGCCCTCGACAGGGCGGGA
TGCAGCTGCTCCACTGCTATGCAGATCCGGATCCCGATGAAGTATTTTAC
ACCTGCGCCTGGTCGTACGACCTTAAGACCTCTTCACCTCTCCTGGCCGC
TGCTGGATACCGCGGAGTCATCCGGGTTATTGATGTCGAGCAGAATGAGG
CGGTGGGCAACTACATTGGCCATGGACAGGCCATTAACGAGCTGAAGTTC
CATCCGCACAAGCTACAGCTTTTGCTTTCGGGCAGCAAGGATCACGCGAT
AAGATTGTGGAACATCCAGAGCCATGTGTGCATTGCCATCCTGGGCGGAG
TGGAGGGACATCGCGATGAGGTGCTGTCCATCGACTTTAATATGCGTGGA
GATCGCATTGTGTCGAGCGGCATGGATCACTCGCTGAAGCTGTGGTGTCT
GAATACGCCCGAGTTCCATCACAAGATCGAACTGTCGAACACTTTCAGCC
AGGAGAAGTCAACGCTGCCTTTCCCCACGGTGACCAAGCACTTCCCCGAT
TTTTCAACGCGGGATATACACAGGAACTATGTGGACTGTGTGCAGTGGTT
CGGCAACTTTGTGCTCTCCAAGTCCTGCGAAAATGCCATTGTCTGCTGGA
AGCCGGGACAACTACATCAGAGTTTCGAGCAGGTGAAGCCGAGCGACTCC
TCCTGCACGATAATCGCGGAATTCGAGTACGATGAGTGCGAGATCTGGTT
CGTGAGATTCGGCTTCAATCCGTGGCAGAAGGTGATTGCCCTGGGCAATC
AGCAGGGCAAGGTGTATGTGTGGGAGCTGGATCCCAGCGATCCCGAGGGC
GCACACATGACCACCCTGCACAATTCGCGTAGCGTGGCCACTGTGCGCCA
GATCGCCTTCTCCCGCGATGCCAGCGTACTGGTCTACGTGTGCGATGACG
CCACCGTGTGGCGATGGAACCGCAGACAAACGACTTCCATCGCAAGCTTT
CTAGACCAT
BO10575.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:14:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
esc-RA | 1278 | CG14941-PA | 1..1275 | 17..1291 | 6270 | 99.5 | Plus |
escl-RC | 1389 | CG5202-PC | 616..1064 | 509..957 | 325 | 71.5 | Plus |
escl-RA | 1389 | CG5202-PA | 616..1064 | 509..957 | 325 | 71.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
esc-RA | 1704 | CG14941-RA | 166..1445 | 12..1291 | 6280 | 99.4 | Plus |
escl-RC | 1532 | CG5202-RC | 662..1110 | 509..957 | 325 | 71.5 | Plus |
escl-RA | 1809 | CG5202-RA | 662..1110 | 509..957 | 325 | 71.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11827463..11828371 | 1291..383 | 4440 | 99.2 | Minus |
2L | 23513712 | 2L | 11828736..11828907 | 382..211 | 860 | 100 | Minus |
2L | 23513712 | 2L | 11828970..11829103 | 210..77 | 670 | 100 | Minus |
2L | 23513712 | 2L | 11991701..11992149 | 509..957 | 325 | 71.5 | Plus |
2L | 23513712 | 2L | 11829175..11829240 | 77..12 | 315 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:14:52 has no hits.
BO10575.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-17 09:38:13 Download gff for
BO10575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
esc-RA | 168..1442 | 17..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:02 Download gff for
BO10575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
esc-RA | 171..1445 | 17..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:04 Download gff for
BO10575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
esc-RA | 171..1445 | 17..1293 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:04 Download gff for
BO10575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11827460..11828371 | 383..1293 | 99 | <- | Minus |
2L | 11828736..11828907 | 211..382 | 100 | <- | Minus |
2L | 11828970..11829103 | 77..210 | 100 | <- | Minus |
2L | 11829176..11829235 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:02 Download gff for
BO10575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11827460..11828371 | 383..1293 | 99 | <- | Minus |
arm_2L | 11828736..11828907 | 211..382 | 100 | <- | Minus |
arm_2L | 11828970..11829103 | 77..210 | 100 | <- | Minus |
arm_2L | 11829176..11829235 | 17..76 | 100 | | Minus |
BO10575.5prime Sequence
420 bp (349 high quality bases) assembled on 2006-04-19
> BO10575.5prime
GAAGTTATCAGTCGACATGAGCAGTGATAAAGTGAAAAACGGCAACGAGC
CCGAGGAGTCGGAGGAATCATGCGGCGATGAGTCGGCCAGCTATACCACC
AACAGCACCACCTCGCGCAGCAAGTCCCCGTCATCCAGCACGCGCAGCAA
GCGCCGCGGTCGCCGGAGCACCAAATCGAAGCCAAAAAGTCGCGCCGCCT
ACAAATACGACACCCACGTGAAGGAGAACCACGGAGCCAACATCTTCGGC
GTAGCCTTCAACACGCTGCTGGGCAAGGATGAGCCACAGGTCTTCGCTAC
GGCGGGCAGCAACCGGGTGACCGTCTACGAGTGCCCTCGACAGGGCGGGA
TGCAGCTGCTCCACTGCTATGCAGATCCGGATCCCGATGAAGTATTTTAC
ACCTGCGCCTGGTCGTACGA
BO10575.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14941-PA | 1278 | esc-RA | 1..404 | 17..420 | 2020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
esc-RA | 1704 | CG14941-RA | 166..574 | 12..420 | 2030 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11828736..11828907 | 382..211 | 860 | 100 | Minus |
2L | 23513712 | 2L | 11828970..11829103 | 210..77 | 670 | 100 | Minus |
2L | 23513712 | 2L | 11829175..11829240 | 77..12 | 315 | 98.5 | Minus |
2L | 23513712 | 2L | 11828334..11828371 | 420..383 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:26:35 has no hits.
BO10575.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:43:11 Download gff for
BO10575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
esc-PA | 1..403 | 17..419 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:58:14 Download gff for
BO10575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14941-PA | 1..403 | 17..419 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:34:19 Download gff for
BO10575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
esc-RA | 166..573 | 12..419 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:59:37 Download gff for
BO10575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
esc-RA | 166..573 | 12..419 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:59:37 Download gff for
BO10575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11828970..11829103 | 77..210 | 100 | <- | Minus |
2L | 11829176..11829240 | 12..76 | 98 | | Minus |
2L | 11828335..11828371 | 383..419 | 100 | <- | Minus |
2L | 11828736..11828907 | 211..382 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:34:19 Download gff for
BO10575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11828335..11828371 | 383..419 | 100 | <- | Minus |
arm_2L | 11828736..11828907 | 211..382 | 100 | <- | Minus |
arm_2L | 11828970..11829103 | 77..210 | 100 | <- | Minus |
arm_2L | 11829176..11829240 | 12..76 | 98 | | Minus |
BO10575.pep Sequence
Translation from 16 to 1309
> BO10575.pep
MSSDKVKNGNEPEESEESCGDESASYTTNSTTSRSKSPSSSTRSKRRGRR
STKSKPKSRAAYKYDTHVKENHGANIFGVAFNTLLGKDEPQVFATAGSNR
VTVYECPRQGGMQLLHCYADPDPDEVFYTCAWSYDLKTSSPLLAAAGYRG
VIRVIDVEQNEAVGNYIGHGQAINELKFHPHKLQLLLSGSKDHAIRLWNI
QSHVCIAILGGVEGHRDEVLSIDFNMRGDRIVSSGMDHSLKLWCLNTPEF
HHKIELSNTFSQEKSTLPFPTVTKHFPDFSTRDIHRNYVDCVQWFGNFVL
SKSCENAIVCWKPGQLHQSFEQVKPSDSSCTIIAEFEYDECEIWFVRFGF
NPWQKVIALGNQQGKVYVWELDPSDPEGAHMTTLHNSRSVATVRQIAFSR
DASVLVYVCDDATVWRWNRRQTTSIASFLDH
BO10575.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:19:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
esc-PA | 425 | CG14941-PA | 1..425 | 1..425 | 2291 | 100 | Plus |
escl-PC | 462 | CG5202-PC | 35..460 | 2..419 | 1356 | 58.4 | Plus |
escl-PA | 462 | CG5202-PA | 35..460 | 2..419 | 1356 | 58.4 | Plus |