Clone BO10588 Report

Search the DGRC for BO10588

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:105
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptSrp54-RA
Protein status:BO10588.pep: Imported from assembly
Sequenced Size:1573

Clone Sequence Records

BO10588.5prime Sequence

503 bp (313 high quality bases) assembled on 2006-04-19

> BO10588.5prime
GAAGTTATCAGTCGACATGGCTGGCGGCAACACCCCGCGTGTGATCCAGG
TGACCAACATAGCGCCGCAGGCCACCAAGGACCAGATGCAGACGCTGTTC
GGGAACATTGGCAAGATAGAGGAGATCCGCCTGTACCCGACAATCCGTGA
TGTCTCCTGTCCGGTGCAGTCGCGCATCTGCTATGTGAAATACACGGACA
CGACCAGTGTGCCGGTGGCCCAGCACTTGACCAACACGGTGTTCATCGAT
CGCGCCCTAATTGTCATACCCGTTCTGGCCATACCCGAGGAGTATCGGGC
CCTGGAGATGCTCAAGAACGGAACCATTGTGCCGGGACTCCAGAAGCCGG
ACTCCCAGCTACCGCCCCGAAGTCATTAACCGCATCGAGGGACAGCTGCC
GCAGCAAGTGATCAAGACGTACGACCCCAAGTTGGTGGAAATTCATCTGC
CGGAGTACCCGGCCTTACCCTCGTTCTACGATGCGCGCAAAATCGAGGAG
ATT

BO10588.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4602-PA 1542 Srp54-RA 1..351 17..367 1730 99.7 Plus
CG4602-PA 1542 Srp54-RA 349..423 366..440 375 100 Plus
CG4602-PA 1542 Srp54-RA 428..486 445..503 295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:23:16
Subject Length Description Subject Range Query Range Score Percent Strand
Srp54-RA 2134 CG4602-RA 136..623 15..503 2360 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9913046..9913533 15..503 2335 99 Plus
Blast to na_te.dros performed on 2015-02-12 20:23:15 has no hits.

BO10588.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:43:28 Download gff for BO10588.5prime
Subject Subject Range Query Range Percent Splice Strand
Srp54-PA 1..486 17..503 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:58:34 Download gff for BO10588.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4602-PA 1..486 17..503 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:38:36 Download gff for BO10588.5prime
Subject Subject Range Query Range Percent Splice Strand
Srp54-RA 136..623 15..503 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:47:03 Download gff for BO10588.5prime
Subject Subject Range Query Range Percent Splice Strand
Srp54-RA 136..623 15..503 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:47:03 Download gff for BO10588.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9913046..9913533 15..503 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:38:36 Download gff for BO10588.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9913046..9913533 15..503 99   Plus

BO10588.complete Sequence

1573 bp assembled on 2008-08-15

GenBank Submission: FJ631806

> BO10588.complete
GAAGTTATCAGTCGACATGGCTGGCGGCAACACCCCGCGTGTGATCCAGG
TGACCAACATAGCGCCGCAGGCCACCAAGGACCAGATGCAGACGCTGTTC
GGGAACATTGGCAAGATAGAGGAGATCCGCCTGTACCCGACAATCCGTGA
TGTCTCCTGTCCGGTGCAGTCGCGCATCTGCTATGTGAAATACACGGACA
CGACCAGTGTGCCGGTGGCCCAGCACTTGACCAACACGGTGTTCATCGAT
CGCGCCCTAATTGTCATACCCGTTCTGGCCATACCCGAGGAGTATCGGGC
CCTGGAGATGCTCAAGAACGGAACCATTGTGCCGGGACTCCAGAAGCCGG
ACTCCAAGCTACCGCCCGAAGTCATTAACCGCATCGAGGGACAGCTGCCG
CAGCAAGTGATCAAGACGTACGACCCCAAGTTGGTGGAATTCAATCTGCC
GGAGTACCCGGCCTTACCCTCGTTCTACGATGCGCGCAAAATCGAGGAGA
TTCGGCGCACCATTATCGTGTGCGATGTTAAGAACGAGTGGCGGCTAGAC
GATCTGATGGAATGCTTTCAGCGCGCTGGGGAGGTGAAGTATGCCCGTTG
GGCCGAGAAGGATAACAAGACGTACTGCATGATTGAGTTCTGCGAACAGA
CCAGCATTATTCACGCCCTGCGCATGCAGGGCCAGGAGTTCAAGGGTGGC
CATCTAAGCGTCTACCACTCCACGTATTCCATAACCAAGCCGGAGGCAAA
GTCGAATGAGGCAGCGCAGGCTGAGATTGAGGAGGCCATGACCATTGTGA
AAGAGGCGCAGAGTATGATCTCAGCGGCCATTGATCCGGTAATTGGAATG
CTCGCTAAGGACAAGCGCCGCAGGTCGAGATCACGGTCCCGTTCCCGGGA
CCGTCGCACCAGTCGATCCCGCTCGCATCGTTCCACATCGAGACGCCGTT
CCAGGCGTTCCGGTTCCAGAGAGCGACGTAGTGTGTCCCGATCACGCCGC
TCTAGGTCGCGTGGCAAGCACTCGTCCCGTTCTCGCAGCAAGCGCTCAAG
ATCACGACACCGTCGCAGCTCCTCACGTTCCAGGAGATCACGCTCCCGTG
GCGGCAAGCACTCTCGCTCCTCAAGGTCGCGTGGCAAGCGCTCCAGGTCC
CGCCATCGCCGCAGCACCTCACGCTCACGTAGCTCGCGTTCCCATGGCAC
CGGTGGAGGAGGCAGTGGCAACGGCAAACGTTCCCGATCCCGCGAGCGCA
GCAAGAAGTCACACCGCAGCGAGAAGCACTCTTCACGTTCTCCCCGATCT
AGAAGCAAGCGCAGCTCTCCCTCGCCGCCGCCAGCTACCGGCAGTAAGTC
ACGGTCCAGTCGCAGCAAGGATCCGGTCATCGTTTCCGCCAAGTCATCCC
GGCGGCGCGACCGCTCCCGTACTCCCGAAACTCGCAAACTCAAATCCATC
TCTGAGGACACTGAGGTTAAGAGCTCACGATCCAGCGCCGATTCGAAGTC
ACGCAAATCGGTTAGTGTCGAGAAGTCGGACAACATGGACATCTCCAACT
CGCCCGCAAGCTTTCTAGACCAT

BO10588.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
Srp54-RA 1542 CG4602-PA 1..1539 17..1555 7695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
Srp54-RA 2134 CG4602-RA 136..1676 15..1555 7705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9913046..9914586 15..1555 7705 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:57:29 has no hits.

BO10588.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:27 Download gff for BO10588.complete
Subject Subject Range Query Range Percent Splice Strand
Srp54-RA 140..1680 15..1555 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:54 Download gff for BO10588.complete
Subject Subject Range Query Range Percent Splice Strand
Srp54-RA 138..1676 17..1557 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:51 Download gff for BO10588.complete
Subject Subject Range Query Range Percent Splice Strand
Srp54-RA 142..1680 17..1557 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:34:59 Download gff for BO10588.complete
Subject Subject Range Query Range Percent Splice Strand
Srp54-RA 138..1676 17..1557 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:34:59 Download gff for BO10588.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9913048..9914586 17..1557 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:54 Download gff for BO10588.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9913048..9914586 17..1557 99   Plus

BO10588.pep Sequence

Translation from 16 to 1573

> BO10588.pep
MAGGNTPRVIQVTNIAPQATKDQMQTLFGNIGKIEEIRLYPTIRDVSCPV
QSRICYVKYTDTTSVPVAQHLTNTVFIDRALIVIPVLAIPEEYRALEMLK
NGTIVPGLQKPDSKLPPEVINRIEGQLPQQVIKTYDPKLVEFNLPEYPAL
PSFYDARKIEEIRRTIIVCDVKNEWRLDDLMECFQRAGEVKYARWAEKDN
KTYCMIEFCEQTSIIHALRMQGQEFKGGHLSVYHSTYSITKPEAKSNEAA
QAEIEEAMTIVKEAQSMISAAIDPVIGMLAKDKRRRSRSRSRSRDRRTSR
SRSHRSTSRRRSRRSGSRERRSVSRSRRSRSRGKHSSRSRSKRSRSRHRR
SSSRSRRSRSRGGKHSRSSRSRGKRSRSRHRRSTSRSRSSRSHGTGGGGS
GNGKRSRSRERSKKSHRSEKHSSRSPRSRSKRSSPSPPPATGSKSRSSRS
KDPVIVSAKSSRRRDRSRTPETRKLKSISEDTEVKSSRSSADSKSRKSVS
VEKSDNMDISNSPASFLDH

BO10588.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
Srp54-PA 513 CG4602-PA 1..513 1..513 2586 100 Plus
CG9915-PC 820 CG9915-PC 240..522 285..513 291 41 Plus
CG9915-PB 820 CG9915-PB 240..522 285..513 291 41 Plus
CG9915-PC 820 CG9915-PC 219..440 285..500 284 48.1 Plus
CG9915-PB 820 CG9915-PB 219..440 285..500 284 48.1 Plus
CG9915-PC 820 CG9915-PC 160..388 285..500 283 44.3 Plus
CG9915-PB 820 CG9915-PB 160..388 285..500 283 44.3 Plus
CG9915-PC 820 CG9915-PC 16..316 236..495 282 38.5 Plus
CG9915-PB 820 CG9915-PB 16..316 236..495 282 38.5 Plus
CG9915-PC 820 CG9915-PC 175..404 288..500 278 43.7 Plus
CG9915-PB 820 CG9915-PB 175..404 288..500 278 43.7 Plus
CG9915-PC 820 CG9915-PC 191..416 285..500 273 44.3 Plus
CG9915-PB 820 CG9915-PB 191..416 285..500 273 44.3 Plus
CG9915-PC 820 CG9915-PC 112..365 285..512 270 40.4 Plus
CG9915-PB 820 CG9915-PB 112..365 285..512 270 40.4 Plus
CG6695-PB 715 CG6695-PB 360..554 236..441 247 43.8 Plus
CG6695-PA 961 CG6695-PA 360..554 236..441 247 43.8 Plus
CG9915-PC 820 CG9915-PC 319..525 283..493 244 42.2 Plus
CG9915-PB 820 CG9915-PB 319..525 283..493 244 42.2 Plus
CG9915-PC 820 CG9915-PC 319..562 285..518 240 39.1 Plus
CG9915-PB 820 CG9915-PB 319..562 285..518 240 39.1 Plus
CG6695-PB 715 CG6695-PB 410..540 336..474 201 44.3 Plus
CG9915-PC 820 CG9915-PC 56..261 305..515 182 31.9 Plus
CG9915-PB 820 CG9915-PB 56..261 305..515 182 31.9 Plus