Clone Sequence Records
BO10596.3prime Sequence
668 bp (545 high quality bases) assembled on 2006-04-19
> BO10596.3prime
ATGGTCTAGAAAGCTTGCTTTGGCACTTTTCATTAGGCGACTGCTGGCAA
AACATTCGCCAAAGAAGCGATCCAATGAATGATACAAATGGGGTCGCACA
TTGGACAGTCCATGATCCTCGTCAGCGTAGCTAATCTGCTTGAAGAGAAT
ATCTTGACGCTCCAGATTCTTGGCCAATATCATGGCCTGCTGGTAGTGCA
CATTATCATCCAGTGTGCCATGTACCAGAAGGTACTTCTTACCCCTCAGC
TTCACGGCCATTGTGCTCAGTCTAGAGTTGGCATAGCCCAGCTCATTCGT
GTTGGGAAGACCCATATAGCGCTCTGTGTAAATGGAGTCATAGTAAGCCC
AATCCGTGACTGGAGCTATCGAGGCTGCACACTTGAACACCTTGGCTTCA
TCATTGGCCAGAGCCATGGCAGCCGCGTAGCCACCATATGACCAGCCCCA
AATGCCAACGTGATCGGGATCAATGTAGTTAAACAGCGTAGAGAGTTTTT
GAGTTACGTTGATCTGATCGCTGATCTCCACGGTGCCCAACTTTAAGTAG
ATGGCATGGAGTAGACTCTCTCCACGGAGTCCGGAGCCACGACCATCGAT
CTTGGCATAGATCACAGACTGATTGGAGCTCAAATATGTGCCCCAGTCCA
CCATCCATTTGTTGGTAA
BO10596.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32145-PA | 2409 | ome-RA | 1757..2406 | 668..19 | 3250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:54:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ome-RH | 3263 | CG42280-RH | 1837..2486 | 668..19 | 3250 | 100 | Minus |
ome-RG | 4070 | CG32145-RB | 2644..3293 | 668..19 | 3250 | 100 | Minus |
ome-RF | 3356 | CG32145-RA | 1930..2579 | 668..19 | 3250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:54:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14746707..14746913 | 339..133 | 1035 | 100 | Minus |
3L | 28110227 | 3L | 14746236..14746404 | 668..500 | 845 | 100 | Minus |
3L | 28110227 | 3L | 14746487..14746647 | 499..339 | 805 | 100 | Minus |
3L | 28110227 | 3L | 14746978..14747091 | 132..19 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:54:36 has no hits.
BO10596.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:43:35 Download gff for
BO10596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ome-PA | 1759..2409 | 15..666 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:58:43 Download gff for
BO10596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32145-PA | 1759..2409 | 15..666 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:37:08 Download gff for
BO10596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ome-RF | 1930..2582 | 15..668 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:34:29 Download gff for
BO10596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ome-RF | 1930..2582 | 15..668 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:34:29 Download gff for
BO10596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14746236..14746404 | 500..668 | 100 | -> | Minus |
3L | 14746487..14746647 | 339..499 | 100 | -> | Minus |
3L | 14746708..14746913 | 133..338 | 100 | -> | Minus |
3L | 14746978..14747094 | 15..132 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:37:08 Download gff for
BO10596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14739336..14739504 | 500..668 | 100 | -> | Minus |
arm_3L | 14739587..14739747 | 339..499 | 100 | -> | Minus |
arm_3L | 14739808..14740013 | 133..338 | 100 | -> | Minus |
arm_3L | 14740078..14740194 | 15..132 | 98 | | Minus |
BO10596.5prime Sequence
627 bp (392 high quality bases) assembled on 2006-04-19
> BO10596.5prime
GAAGTTATCAGTCGACATGTCTGGTAATGATGTTTCGGTGACTGAAACAG
CACAGAGCGATCAGAATCTAATGCATACCAAGGAGAAGAAGCGCCGGGTG
CGAATCATCCTGACTGTTGTAACCACGGTCATAGCGGTTGCTCTATTGGC
CACGGCCCTGGTTTTCATTCTCCGGACGGATGAAAAGGATGCCGACGACT
CTGACTCANACTCAAACAATGCCATCGATTTGGAGGATGTGCTAAGTGGT
CAACTATATGCCAAGCGATTCAACGGCAGCTGGAGCAATGGAAACAGTCT
CATTTACAAGGAGAATACGTCCATCATGGAGTTCGATGCCAAGACGGGTG
AACGTTCCATCCTGCTGGAAGATGCGCAACATTATGTCCTGTACGAAAAG
TCCGCCGATGGGGAGTTCCTTTTGCTGGCAAAGAACTACAAGAAGAACTT
CCGGTACAGCTTTCTAGCTGAGTACGATCTGTACAATCTGAACACAAAAG
AATTCATCCAGTTGACCATCCAAAACGAGCAGCACTACCTGAGCATGGTC
CAATGGTCACCGGTGGGAAATGCCCTTGTGATCAATTACGATCGGAATCT
GTACTACAAGGAGAGTGCATTGGCGCA
BO10596.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32145-PA | 2409 | ome-RA | 1..611 | 17..627 | 3036 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:09:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ome-RF | 3356 | CG32145-RA | 174..784 | 17..627 | 3044 | 99.8 | Plus |
ome-RG | 4070 | CG32145-RB | 934..1498 | 63..627 | 2814 | 99.8 | Plus |
ome-RE | 4109 | CG42280-RE | 973..1537 | 63..627 | 2814 | 99.8 | Plus |
ome-RG | 4070 | CG32145-RB | 174..221 | 17..64 | 240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14744530..14744838 | 319..627 | 1545 | 100 | Plus |
3L | 28110227 | 3L | 14744187..14744443 | 63..319 | 1274 | 99.6 | Plus |
3L | 28110227 | 3L | 14736088..14736135 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:09:13 has no hits.
BO10596.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:43:36 Download gff for
BO10596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ome-PA | 1..610 | 17..626 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:58:45 Download gff for
BO10596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32145-PA | 1..610 | 17..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:26:19 Download gff for
BO10596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ome-RF | 174..783 | 17..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:41:25 Download gff for
BO10596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ome-RF | 174..783 | 17..626 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:41:25 Download gff for
BO10596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14736088..14736135 | 17..64 | 100 | -> | Plus |
3L | 14744189..14744443 | 65..319 | 99 | -> | Plus |
3L | 14744531..14744837 | 320..626 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:26:19 Download gff for
BO10596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14729188..14729235 | 17..64 | 100 | -> | Plus |
arm_3L | 14737289..14737543 | 65..319 | 99 | -> | Plus |
arm_3L | 14737631..14737937 | 320..626 | 100 | | Plus |
BO10596.complete Sequence
2440 bp assembled on 2007-10-05
GenBank Submission: FJ631808
> BO10596.complete
GAAGTTATCAGTCGACATGTCTGGTAATGATGTTTCGGTGACTGAAACAG
CACAGAGCGATCAGAATCTAATGCATACCAAGGAGAAGAAGCGCCGGGTG
CGAATCATCCTGACTGTTGTAACCACGGTCATAGCGGTTGCTCTATTGGC
CACGGCCCTGGTTTTCATTCTCCGGACGGATGAAAAGGATGCCGACGACT
CTGACTCAAACTCAAACAATGCCATCGATTTGGAGGATGTGCTAAGTGGT
CAACTATATGCCAAGCGATTCAACGGCAGCTGGAGCAATGGAAACAGTCT
CATTTACAAGGAGAATACGTCCATCATGGAGTTCGATGCCAAGACGGGTG
AACGTTCCATCCTGCTGGAAGATGCGCAACATTATGTCCTGTACGAAAAG
TCCGCCGATGGGGAGTTCCTTTTGCTGGCAAAGAACTACAAGAAGAACTT
CCGGTACAGCTTTCTAGCTGAGTACGATCTGTACAATCTGAACACAAAAG
AATTCATCCAGTTGACCATCCAAAACGAGCAGCACTACCTGAGCATGGTC
CAATGGTCACCGGTGGGAAATGCCCTTGTGATCAATTACGATCGGAATCT
GTACTACAAGGAGAGTGCATTGGCGCAGGAGATTGCCCTCACTAGCGATG
AACAAGCGGGTATACTGAATGGCATTCCCGATTGGGTGTACGAGGAAGAG
GTATTCAGCTCCAATGTGGCCACCTGGTTCAACCCATCGGGCACCCAATT
GGCCTTCATCAAGTTCGACGATTCGTCCACTCACCTGATCAATTTCCCCT
ACTACGGAGATGCCGGCGATTTGCGCTATCAGTATCCACTGCATCAGGTC
ATCGCCTATCCAAAGGCTGGTTCCTCGAATCCGCGGGTGGAACTGGTGAT
GGTCGATCTAAAGAGAGCCGTTGCTGGTGGAGATTTCGTGACCGTGATGC
CGGTTCCGTCGGCCCTCAACACGGAAACGGACTACATTGTCACCGTGGTC
AGTTGGGTGGACGATGACAACGTTCTGTCCATCTGGATGAACCGCATTCA
AAATGCCGCCTATGTCGTCACCTTCGACGGACTCAACAGGAAAGTGATTT
ATAGTGCCGAATCGAAGACCGGTTGGGTTGATCTCTATACCGCTCCGTTC
CGTAACCGCAATGGATCCCGTCTGGCCTTCGTCCTGCCGCACAACAACTA
TAAGCACGTCCAGCTCCTGAGCTCCACGGTGGCCAGTTCCGAGCCACAAG
CACTGGAGCCCCTGACCGAGGGCAAGTATGTGGTGGACAGCATCCTCCAC
TGGGACGGAAAGAACGACATCATATTCTACACGGCCAACACAGAGGATCA
TCCCGAGCAGCTGCATCTGTACGCCATTCGGGCACTGGCCAAGCAGAGTC
CCAAGTGCCTCACGTGCAACCTTATCAAGTCCGGGGATGTGCAACAGACC
TACTTCTCGGCCACTTTCAACGACAATAACCACATTGTGATCACCTCTCT
GGGACCTGGAATACCCACAACCCATATATACGAGTGGAAATATGAGAACT
CTCAAGTTGTCATCTCTAAAGTCCTCGACTGGGAAACCAATGAAAGCCTG
CGTGCCAAACTGAAGGGCGTGGCTCTACCTTCCCACAAAATTCTAACCGT
AGACATTGACGGCGGCTTTCAGGCAAAGGTGCTCCTCCAGCTGCCGCCCA
ACTTGGACACAAGTGGCGCAACCAAGTATCCCATGCTCGTGGATGTCTAT
GGTGGCCCAGATTCCTATTCTGTTACCAACAAATGGATGGTGGACTGGGG
CACATATTTGAGCTCCAATCAGTCTGTGATCTATGCCAAGATCGATGGTC
GTGGCTCCGGACTCCGTGGAGAGAGTCTACTCCATGCCATCTACTTAAAG
TTGGGCACCGTGGAGATCAGCGATCAGATCAACGTAACTCAAAAACTCTC
TACGCTGTTTAACTACATTGATCCCGATCACGTTGGCATTTGGGGCTGGT
CATATGGTGGCTACGCGGCTGCCATGGCTCTGGCCAATGATGAAGCCAAG
GTGTTCAAGTGTGCAGCCTCGATAGCTCCAGTCACGGATTGGGCTTACTA
TGACTCCATTTACACAGAGCGCTATATGGGTCTTCCCAACACGAATGAGC
TGGGCTATGCCAACTCTAGACTGAGCACAATGGCCGTGAAGCTGAGGGGT
AAGAAGTACCTTCTGGTACATGGCACACTGGATGATAATGTGCACTACCA
GCAGGCCATGATATTGGCCAAGAATCTGGAGCGTCAAGATATTCTCTTCA
AGCAGATTAGCTACGCTGACGAGGATCATGGACTGTCCAATGTGCGACCC
CATTTGTATCATTCATTGGATCGCTTCTTTGGCGAATGTTTTGCCAGCAG
TCGCCTAATGAAAAGTGCCAAAGCAAGCTTTCTAGACCAT
BO10596.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ome-RF | 2409 | CG42280-PF | 1..2406 | 17..2422 | 12030 | 100 | Plus |
ome-RG | 3123 | CG42280-PG | 761..3120 | 63..2422 | 11800 | 100 | Plus |
ome-RE | 2772 | CG42280-PE | 410..2769 | 63..2422 | 11800 | 100 | Plus |
ome-RG | 3123 | CG42280-PG | 1..48 | 17..64 | 240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ome-RF | 3356 | CG32145-RA | 174..2579 | 17..2422 | 12030 | 100 | Plus |
ome-RG | 4070 | CG32145-RB | 934..3293 | 63..2422 | 11800 | 100 | Plus |
ome-RE | 4109 | CG42280-RE | 973..3332 | 63..2422 | 11800 | 100 | Plus |
ome-RG | 4070 | CG32145-RB | 174..221 | 17..64 | 240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14744530..14745307 | 319..1096 | 3890 | 100 | Plus |
3L | 28110227 | 3L | 14745427..14745881 | 1096..1550 | 2275 | 100 | Plus |
3L | 28110227 | 3L | 14744187..14744443 | 63..319 | 1285 | 100 | Plus |
3L | 28110227 | 3L | 14745955..14746177 | 1551..1773 | 1115 | 100 | Plus |
3L | 28110227 | 3L | 14746707..14746913 | 2102..2308 | 1035 | 100 | Plus |
3L | 28110227 | 3L | 14746235..14746404 | 1772..1941 | 850 | 100 | Plus |
3L | 28110227 | 3L | 14746487..14746647 | 1942..2102 | 805 | 100 | Plus |
3L | 28110227 | 3L | 14746978..14747091 | 2309..2422 | 570 | 100 | Plus |
3L | 28110227 | 3L | 14736088..14736135 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:56:41 has no hits.
BO10596.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:03 Download gff for
BO10596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ome-RF | 1..2409 | 17..2426 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:48:29 Download gff for
BO10596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ome-RF | 171..2576 | 17..2424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:49 Download gff for
BO10596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ome-RF | 174..2579 | 17..2424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:03 Download gff for
BO10596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ome-RF | 171..2579 | 17..2426 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:54 Download gff for
BO10596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ome-RF | 174..2579 | 17..2424 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:54 Download gff for
BO10596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14736088..14736135 | 17..64 | 100 | -> | Plus |
3L | 14744189..14744443 | 65..319 | 100 | -> | Plus |
3L | 14744531..14745307 | 320..1096 | 100 | -> | Plus |
3L | 14745428..14745881 | 1097..1550 | 100 | -> | Plus |
3L | 14745955..14746175 | 1551..1771 | 100 | -> | Plus |
3L | 14746235..14746404 | 1772..1941 | 100 | -> | Plus |
3L | 14746487..14746647 | 1942..2102 | 100 | -> | Plus |
3L | 14746708..14746913 | 2103..2308 | 100 | -> | Plus |
3L | 14746978..14747091 | 2309..2424 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:49 Download gff for
BO10596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14729188..14729235 | 17..64 | 100 | -> | Plus |
arm_3L | 14737289..14737543 | 65..319 | 100 | -> | Plus |
arm_3L | 14737631..14738407 | 320..1096 | 100 | -> | Plus |
arm_3L | 14738528..14738981 | 1097..1550 | 100 | -> | Plus |
arm_3L | 14739055..14739275 | 1551..1771 | 100 | -> | Plus |
arm_3L | 14739335..14739504 | 1772..1941 | 100 | -> | Plus |
arm_3L | 14739587..14739747 | 1942..2102 | 100 | -> | Plus |
arm_3L | 14739808..14740013 | 2103..2308 | 100 | -> | Plus |
arm_3L | 14740078..14740191 | 2309..2424 | 98 | | Plus |
BO10596.pep Sequence
Translation from 16 to 2440
> BO10596.pep
MSGNDVSVTETAQSDQNLMHTKEKKRRVRIILTVVTTVIAVALLATALVF
ILRTDEKDADDSDSNSNNAIDLEDVLSGQLYAKRFNGSWSNGNSLIYKEN
TSIMEFDAKTGERSILLEDAQHYVLYEKSADGEFLLLAKNYKKNFRYSFL
AEYDLYNLNTKEFIQLTIQNEQHYLSMVQWSPVGNALVINYDRNLYYKES
ALAQEIALTSDEQAGILNGIPDWVYEEEVFSSNVATWFNPSGTQLAFIKF
DDSSTHLINFPYYGDAGDLRYQYPLHQVIAYPKAGSSNPRVELVMVDLKR
AVAGGDFVTVMPVPSALNTETDYIVTVVSWVDDDNVLSIWMNRIQNAAYV
VTFDGLNRKVIYSAESKTGWVDLYTAPFRNRNGSRLAFVLPHNNYKHVQL
LSSTVASSEPQALEPLTEGKYVVDSILHWDGKNDIIFYTANTEDHPEQLH
LYAIRALAKQSPKCLTCNLIKSGDVQQTYFSATFNDNNHIVITSLGPGIP
TTHIYEWKYENSQVVISKVLDWETNESLRAKLKGVALPSHKILTVDIDGG
FQAKVLLQLPPNLDTSGATKYPMLVDVYGGPDSYSVTNKWMVDWGTYLSS
NQSVIYAKIDGRGSGLRGESLLHAIYLKLGTVEISDQINVTQKLSTLFNY
IDPDHVGIWGWSYGGYAAAMALANDEAKVFKCAASIAPVTDWAYYDSIYT
ERYMGLPNTNELGYANSRLSTMAVKLRGKKYLLVHGTLDDNVHYQQAMIL
AKNLERQDILFKQISYADEDHGLSNVRPHLYHSLDRFFGECFASSRLMKS
AKASFLDH
BO10596.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:47:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ome-PF | 802 | CG32145-PA | 1..802 | 1..802 | 4185 | 100 | Plus |
ome-PG | 1040 | CG32145-PB | 254..1040 | 16..802 | 4108 | 99.9 | Plus |
ome-PE | 923 | CG42280-PE | 137..923 | 16..802 | 4108 | 99.9 | Plus |
ome-PH | 784 | CG42280-PH | 1..784 | 19..802 | 4097 | 100 | Plus |
CG11034-PC | 751 | CG11034-PC | 32..741 | 61..791 | 1041 | 33.5 | Plus |