Clone Sequence Records
BO10601.3prime Sequence
943 bp (802 high quality bases) assembled on 2006-04-19
> BO10601.3prime
ATGGTCTAGAAAGCTTGCGACGAGCCGCGTTAGACGCGAAGCGCTGCCGG
CATTGGGATCTACAGGCAGGGCTACATGGTCAACATGCTGCACATTGCGG
AAGTAAGCGTGCTGCAGTGCGTCCTTGGCTGAGATGCGCAGGTTGGGATC
ATAGCACAGCATTGACATTATGAGTTCGTGCGCCTCGTGTTCGGTTATGG
GTTGTGGCATGTTAGTTCCCTCCCATCTAGGGAACTTGGTCTTAAAGTCT
GGCAGCTGCGTCACACCAGGCCAATTTGTTTCATCAGGTGTGCTTAAGGT
ACGGAAAATCCTATAAAGTTGATCGATCTCGCTGTCTCCAGGAAACAAGG
AGCGGCGCATAATCATTTCAGAGAAAATGCAGCCTAGACTCCAGATGTCC
ACGCCCGTGGAGTAGAATTTCGTGCCCAACAGAATCTCTGGAGCTCGGTA
CCAGAGGGTGACGACTTCGTGTGTGTACGCCCGCATAGGCACGTTGAAGG
CCCTTGCTAGGCCAAAGTCAGCCAACTTTATTTTGCCCGCCGTGTCTACG
AGAAGGTTCTGGGGCTTGAGATCGCGATGCAGGATACGATTCGTGTGGCA
AAAGCCGACGGCATCTAATATCTGATGCATATAGCTCTTTATCAACTGAG
GGGTGAACACGTCTTTTTTCTTATCCATCAGCTTCTTTAGATCCATGTTC
AGGTACTCGAATATCATGTACAGATTGTTGCCGGAAATGACTACGTCAAA
TAGTTGGACCACATTTGGGTGCTTAAGGTTCTTCAGCAGGGAGATCTCTC
GAATGGCCGTCGAAGGAACACCCTCCGTTTCGCCTTCTAGCCGAATCTTT
TTGAGGCCACATCCTGCCCGGTGGAGTTGCTACGCGCTTTTGTAACTATA
CCGTAGGTGCCCTCGCCATCTTTTCGGCGCGTGGAAGTTATCT
BO10601.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10498-PA | 945 | cdc2c-RA | 105..942 | 856..19 | 4190 | 100 | Minus |
| CG10498-PB | 945 | cdc2c-RB | 105..942 | 856..19 | 4190 | 100 | Minus |
| CG10498-PA | 945 | cdc2c-RA | 70..105 | 890..855 | 155 | 97.2 | Minus |
| CG10498-PB | 945 | cdc2c-RB | 70..105 | 890..855 | 155 | 97.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:50:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk2-RC | 2224 | CG10498-RC | 89..1016 | 943..19 | 4490 | 99.2 | Minus |
| Cdk2-RB | 1215 | CG10498-RB | 89..1016 | 943..19 | 4490 | 99.2 | Minus |
| Cdk2-RA | 1140 | CG10498-RA | 89..1016 | 943..19 | 4490 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:50:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20736731..20736929 | 364..166 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 20736090..20736286 | 833..637 | 985 | 100 | Minus |
| 3R | 32079331 | 3R | 20736509..20736672 | 527..364 | 820 | 100 | Minus |
| 3R | 32079331 | 3R | 20736984..20737131 | 166..19 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 20736339..20736451 | 638..526 | 565 | 100 | Minus |
| 3R | 32079331 | 3R | 20735719..20735824 | 936..833 | 355 | 93.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:50:48 has no hits.
BO10601.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:43:37 Download gff for
BO10601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdc2c-PA | 15..945 | 16..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:58:46 Download gff for
BO10601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10498-PB | 15..945 | 16..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:53:22 Download gff for
BO10601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdc2c-RA | 89..1016 | 19..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:21 Download gff for
BO10601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk2-RA | 89..1016 | 19..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:21 Download gff for
BO10601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20736985..20737131 | 19..165 | 100 | | Minus |
| 3R | 20736091..20736286 | 637..832 | 100 | -> | Minus |
| 3R | 20735711..20735824 | 833..943 | 93 | -> | Minus |
| 3R | 20736341..20736451 | 526..636 | 100 | -> | Minus |
| 3R | 20736511..20736672 | 364..525 | 100 | -> | Minus |
| 3R | 20736732..20736929 | 166..363 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:53:22 Download gff for
BO10601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16561433..16561546 | 833..943 | 93 | -> | Minus |
| arm_3R | 16561813..16562008 | 637..832 | 100 | -> | Minus |
| arm_3R | 16562063..16562173 | 526..636 | 100 | -> | Minus |
| arm_3R | 16562233..16562394 | 364..525 | 100 | -> | Minus |
| arm_3R | 16562454..16562651 | 166..363 | 100 | -> | Minus |
| arm_3R | 16562707..16562853 | 19..165 | 100 | | Minus |
BO10601.5prime Sequence
962 bp (809 high quality bases) assembled on 2006-04-19
> BO10601.5prime
GAAGTTATCAGTCGACATGACCACCATTCTAGATAACTTTCAACGCGCCG
AAAAGATTGGCGAGGGCACCTACGGTATAGTTTACAAAGCGCGTAGCAAC
TCCACCGGCCAGGATGTGGCCCTCAAAAAGATTCGGCTAGAAGGCGAAAC
GGAGGGTGTTCCTTCGACGGCCATTCGAGAGATCTCCCTGCTGAAGAACC
TTAAGCACCCAAATGTGGTCCAACTATTTGACGTAGTCATTTCCGGCAAC
AATCTGTACATGATATTCGAGTACCTGAACATGGATCTAAAGAAGCTGAT
GGATAAGAAAAAAGACGTGTTCACCCCTCAGTTGATAAAGAGCTATATGC
ATCAGATATTAGATGCCGTCGGCTTTTGCCACACGAATCGTATCCTGCAT
CGCGATCTCAAGCCCCAGAACCTTCTCGTAGACACGGCGGGCAAAATAAA
GTTGGCTGACTTTGGCCTAGCAAGGGCCTTCAACGTGCCTATGCGGGCGT
ACACACACGAAGTCGTCACCCTCTGGTACCGAGCTCCAGAGATTCTGTTG
GGCACGAAATTCTACTCCACGGGCGTGGACATCTGGAGTCTAGGCTGCAT
TTTCTCTGAAATGATTATGCGCCGCTCCTTGTTTCCTGGAGACAGCGAGA
TCGATCAACTTTATAGGATTTTCCGTACCTTAAGCACACCTGATGAAACA
AATTGGCCTGGTGTGACGCAGCTGCCAGACTTTAAGACCAAGTTCCCTAG
ATGGGAGGGAACTAACATGCCACAACCCATAACCGAACACGAGGCGCACG
AACTCATAATGTNCATGCTGTGCTATGATCCCCACCTGCGCATCTCAGCC
AAGGACGCACTGCAGCACGCTTACTTCCGCAATGTGCAGCATGTTGACCA
TGTAGCCCTGCCTGTAGATCCCAATGCCGGCAGCGCTTCGCGTCTAACGC
GGCTCGTCGCAA
BO10601.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10498-PA | 945 | cdc2c-RA | 1..942 | 17..958 | 4641 | 99.6 | Plus |
| CG10498-PB | 945 | cdc2c-RB | 1..942 | 17..958 | 4641 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:07:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk2-RC | 2224 | CG10498-RC | 75..1016 | 17..958 | 4669 | 99.7 | Plus |
| Cdk2-RB | 1215 | CG10498-RB | 75..1016 | 17..958 | 4669 | 99.7 | Plus |
| Cdk2-RA | 1140 | CG10498-RA | 75..1016 | 17..958 | 4669 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:07:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20736731..20736929 | 613..811 | 995 | 100 | Plus |
| 3R | 32079331 | 3R | 20736090..20736286 | 144..340 | 985 | 100 | Plus |
| 3R | 32079331 | 3R | 20736509..20736672 | 450..613 | 820 | 100 | Plus |
| 3R | 32079331 | 3R | 20736988..20737131 | 815..958 | 705 | 99.3 | Plus |
| 3R | 32079331 | 3R | 20735697..20735824 | 17..144 | 640 | 100 | Plus |
| 3R | 32079331 | 3R | 20736339..20736451 | 339..451 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 13:07:22 has no hits.
BO10601.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:43:38 Download gff for
BO10601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdc2c-PA | 1..942 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:58:47 Download gff for
BO10601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10498-PB | 1..942 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:06:44 Download gff for
BO10601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdc2c-RA | 70..1016 | 10..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:46:15 Download gff for
BO10601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk2-RA | 70..1016 | 10..960 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:46:15 Download gff for
BO10601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20736511..20736672 | 452..613 | 100 | -> | Plus |
| 3R | 20735692..20735824 | 10..144 | 97 | -> | Plus |
| 3R | 20736091..20736286 | 145..340 | 100 | -> | Plus |
| 3R | 20736341..20736451 | 341..451 | 100 | -> | Plus |
| 3R | 20736732..20736929 | 614..811 | 100 | -> | Plus |
| 3R | 20736985..20737131 | 812..960 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:06:44 Download gff for
BO10601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16561414..16561546 | 10..144 | 97 | -> | Plus |
| arm_3R | 16561813..16562008 | 145..340 | 100 | -> | Plus |
| arm_3R | 16562063..16562173 | 341..451 | 100 | -> | Plus |
| arm_3R | 16562233..16562394 | 452..613 | 100 | -> | Plus |
| arm_3R | 16562454..16562651 | 614..811 | 100 | -> | Plus |
| arm_3R | 16562707..16562853 | 812..960 | 96 | | Plus |
BO10601.complete Sequence
976 bp (976 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631809
> BO10601.complete
GAAGTTATCAGTCGACATGACCACCATTCTAGATAACTTTCAACGCGCCG
AAAAGATTGGCGAGGGCACCTACGGTATAGTTTACAAAGCGCGTAGCAAC
TCCACCGGCCAGGATGTGGCCCTCAAAAAGATTCGGCTAGAAGGCGAAAC
GGAGGGTGTTCCTTCGACGGCCATTCGAGAGATCTCCCTGCTGAAGAACC
TTAAGCACCCAAATGTGGTCCAACTATTTGACGTAGTCATTTCCGGCAAC
AATCTGTACATGATATTCGAGTACCTGAACATGGATCTAAAGAAGCTGAT
GGATAAGAAAAAAGACGTGTTCACCCCTCAGTTGATAAAGAGCTATATGC
ATCAGATATTAGATGCCGTCGGCTTTTGCCACACGAATCGTATCCTGCAT
CGCGATCTCAAGCCCCAGAACCTTCTCGTAGACACGGCGGGCAAAATAAA
GTTGGCTGACTTTGGCCTAGCAAGGGCCTTCAACGTGCCTATGCGGGCGT
ACACACACGAAGTCGTCACCCTCTGGTACCGAGCTCCAGAGATTCTGTTG
GGCACGAAATTCTACTCCACGGGCGTGGACATCTGGAGTCTAGGCTGCAT
TTTCTCTGAAATGATTATGCGCCGCTCCTTGTTTCCTGGAGACAGCGAGA
TCGATCAACTTTATAGGATTTTCCGTACCTTAAGCACACCTGATGAAACA
AATTGGCCTGGTGTGACGCAGCTGCCAGACTTTAAGACCAAGTTCCCTAG
ATGGGAGGGAACTAACATGCCACAACCCATAACCGAACACGAGGCGCACG
AACTCATAATGTCAATGCTGTGCTATGATCCCAACCTGCGCATCTCAGCC
AAGGACGCACTGCAGCACGCTTACTTCCGCAATGTGCAGCATGTTGACCA
TGTAGCCCTGCCTGTAGATCCCAATGCCGGCAGCGCTTCGCGTCTAACGC
GGCTCGTCGCAAGCTTTCTAGACCAT
BO10601.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk2-RC | 945 | CG10498-PC | 1..942 | 17..958 | 4710 | 100 | Plus |
| Cdk2-RB | 945 | CG10498-PB | 1..942 | 17..958 | 4710 | 100 | Plus |
| Cdk2-RA | 945 | CG10498-PA | 1..942 | 17..958 | 4710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk2-RC | 2224 | CG10498-RC | 75..1016 | 17..958 | 4710 | 100 | Plus |
| Cdk2-RB | 1215 | CG10498-RB | 75..1016 | 17..958 | 4710 | 100 | Plus |
| Cdk2-RA | 1140 | CG10498-RA | 75..1016 | 17..958 | 4710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20736731..20736929 | 613..811 | 995 | 100 | Plus |
| 3R | 32079331 | 3R | 20736090..20736286 | 144..340 | 985 | 100 | Plus |
| 3R | 32079331 | 3R | 20736509..20736672 | 450..613 | 820 | 100 | Plus |
| 3R | 32079331 | 3R | 20736984..20737131 | 811..958 | 740 | 100 | Plus |
| 3R | 32079331 | 3R | 20735697..20735824 | 17..144 | 640 | 100 | Plus |
| 3R | 32079331 | 3R | 20736339..20736451 | 339..451 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:32:44 has no hits.
BO10601.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:08 Download gff for
BO10601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdc2c-RB | 1..945 | 17..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:36 Download gff for
BO10601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdc2c-RC | 73..1019 | 10..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:54 Download gff for
BO10601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdc2c-RA | 75..1016 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:08 Download gff for
BO10601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdc2c-RB | 73..1019 | 10..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:43 Download gff for
BO10601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk2-RA | 75..1016 | 17..960 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:43 Download gff for
BO10601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20736091..20736286 | 145..340 | 100 | -> | Plus |
| 3R | 20736341..20736451 | 341..451 | 100 | -> | Plus |
| 3R | 20736511..20736672 | 452..613 | 100 | -> | Plus |
| 3R | 20736732..20736929 | 614..811 | 100 | -> | Plus |
| 3R | 20736985..20737131 | 812..960 | 98 | | Plus |
| 3R | 20735697..20735824 | 17..144 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:54 Download gff for
BO10601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16561813..16562008 | 145..340 | 100 | -> | Plus |
| arm_3R | 16562063..16562173 | 341..451 | 100 | -> | Plus |
| arm_3R | 16562707..16562853 | 812..960 | 98 | | Plus |
| arm_3R | 16562233..16562394 | 452..613 | 100 | -> | Plus |
| arm_3R | 16562454..16562651 | 614..811 | 100 | -> | Plus |
| arm_3R | 16561419..16561546 | 17..144 | 100 | -> | Plus |
BO10601.pep Sequence
Translation from 16 to 976
> BO10601.pep
MTTILDNFQRAEKIGEGTYGIVYKARSNSTGQDVALKKIRLEGETEGVPS
TAIREISLLKNLKHPNVVQLFDVVISGNNLYMIFEYLNMDLKKLMDKKKD
VFTPQLIKSYMHQILDAVGFCHTNRILHRDLKPQNLLVDTAGKIKLADFG
LARAFNVPMRAYTHEVVTLWYRAPEILLGTKFYSTGVDIWSLGCIFSEMI
MRRSLFPGDSEIDQLYRIFRTLSTPDETNWPGVTQLPDFKTKFPRWEGTN
MPQPITEHEAHELIMSMLCYDPNLRISAKDALQHAYFRNVQHVDHVALPV
DPNAGSASRLTRLVASFLDH
BO10601.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk2-PC | 314 | CG10498-PC | 1..314 | 1..314 | 1646 | 100 | Plus |
| Cdk2-PB | 314 | CG10498-PB | 1..314 | 1..314 | 1646 | 100 | Plus |
| Cdk2-PA | 314 | CG10498-PA | 1..314 | 1..314 | 1646 | 100 | Plus |
| Cdk1-PA | 297 | CG5363-PA | 1..291 | 5..291 | 913 | 59.5 | Plus |
| Cdk5-PA | 294 | CG8203-PA | 1..294 | 5..295 | 734 | 47.3 | Plus |
