Clone Sequence Records
BO10602.3prime Sequence
948 bp (820 high quality bases) assembled on 2006-04-19
> BO10602.3prime
ATGGTCTAGAAAGCTTGCATTATTTATTATCCATTTGTGACTAGTTTCAA
GCTCCAAATTTGCATTGACTGGACCCAAAATGCATTTTCCATAATGCATG
GACTCTTTTCCAAAATAATTTTCTATAGCGCATTGCAGATCATCAATAGT
TACAGAGAGCATTCGGGAGCGATAGCTCTCAAAATCCTCTTGTGACACTT
CATAAAGGAAATAATCGATGCCAATATTTCCAGGTGCTATTGGAGTGTCT
AATTGCTGCAACACACCAAGCTTCGACTCAAAAAGAGACTGTTGGTCAAT
TACATTTTGATTTGCACGTAACCATTTATAAGTTTCATCAAAAGCGTTAA
GCGTTTTAGTTGAATTTGGATCTCGATAACTATAAAAACTGAAAATCCCG
TCTGAGCTGATTTTCGCACCAGCTCCGTAAGCGCCATTCTTCTCGCGAAT
AACAGGCAATAGATATTTGGCTGATAGCAATTTTGCCAAAACTCGCAGTG
TTGGATGGTCTTGGTGGAGATATGGGACTGTGAACAAAGCTTTAGCACAG
TAATTAACTGGTATGTTCATCACGTATTGTTGACAGCTAGGGTCCAAATA
ATGGATATTTCGACTTGTTTGTGTTTTCCCAAATGTTGGCAGGCTCTCCA
AAAATTTTTCGTAATTACTTATAGCCGATGGCTCATAAGATTGTGTTGTG
TTAATGGCGCCACGCATATTATCCTTGTTAAAAACTTTTGATGCAATTGT
CGACAATTTATCACATATATCTACCGTGCTTGTAGAATGTACAAAATTTT
TCATAAAGTCTATATGATCTACCCCATATAGTAGCGATTTGAGTTTACCA
GCATCACACACTTGTGATGTTGCTCCCAACATAACATATAAATGACCAGA
ACTAGCCACTCCCACAGATATATATGATATATAATTTTTCTATAAGCA
BO10602.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3107-PB | 3105 | CG3107-RB | 2183..3102 | 938..19 | 4575 | 99.8 | Minus |
CG3107-PA | 3105 | CG3107-RA | 2183..3102 | 938..19 | 4575 | 99.8 | Minus |
CG3107-PC | 3105 | CG3107-RC | 2183..3102 | 938..19 | 4575 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:15:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3107-RD | 3966 | CG3107-RD | 2998..3926 | 948..19 | 4610 | 99.8 | Minus |
CG3107-RC | 3156 | CG3107-RC | 2188..3116 | 948..19 | 4610 | 99.8 | Minus |
CG3107-RA | 3230 | CG3107-RA | 2262..3190 | 948..19 | 4610 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:15:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5094131..5095050 | 938..19 | 4585 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-06 17:15:44 has no hits.
BO10602.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:43:39 Download gff for
BO10602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-PB | 2175..3105 | 15..947 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:58:48 Download gff for
BO10602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-PC | 2175..3105 | 15..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:30:54 Download gff for
BO10602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-RB | 2364..3296 | 12..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:27:45 Download gff for
BO10602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-RA | 2263..3195 | 12..947 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:27:45 Download gff for
BO10602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5094123..5095055 | 12..947 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:30:54 Download gff for
BO10602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 981628..982560 | 12..947 | 99 | | Minus |
BO10602.5prime Sequence
924 bp (795 high quality bases) assembled on 2006-04-19
> BO10602.5prime
GAAGTTATCAGTCGACATGTTAAAAGGTGGAATGTTATCGCGGTGGAAGA
TGTGGTCTCCACAATACAAAATCTTGAGAAATCACCTTATAAATTTCAAG
TCGGTGTCCACATATAAGAACATTTCTGGCGTCAATACCAAGCAGCCCAA
ATCTCCACGACAATTTGGTTGCATGCCACATGTAACTAAGAAAAGAAAAT
ACAAGTATGAAGAGGGAAAGACATACCATGGCTTCCAATGCGAACGTGTG
GAACACATTTCTGAATTTGAACTTACGTCCTATACTTTTCGATATGAGCG
CACGGGTACAGAATTATGGCATATCGACCGAAATGATTCAAACAACGTAT
TTTCCATTAATTTTCGAACCACGCCCTTTGATTCTACTGGTCTACCTCAT
ATTTTAGAGCATTTATCGTTGTGCGGTTCACAAAAATATCCTGTCAGGGA
CCCTTTCTTCAAAATGCTTAACCGCTCGGTAGCGACATTTATGAATGCAA
TGACTGGTCCAGATTATACTATTTATCCTTTTTCGACGATGAATGAGATA
GATTTTAGGAATTTGCAACATATTTATTTAGATGCCGTATTCAGACCAAA
CCTGGCGTATTTCGATTTTCTTCAAGAGGGCTGGAGGCTAGAAAACAAAG
ATATATTCGATAAACAATCGAAGCTTGTAATCAAAGGAGTTGTTTATAAC
GAAATGAAAGGTGCGTTTTCTGAAAACGCGCAGGTATTTAGTCAGAATTT
ACTCAATAATATTTTTCCTGATCACACATATCGACATGTGTCTGGCGGAA
ATCCATTGGAAATACCAAGTTAGCATACAACGATTTAGTTGAATTCCACA
AAAAATACTATCATCCAAGTAATGCTCGCATATATTCCTACGGATTATTT
GATGCAAGTAAACCCTCGCACTTC
BO10602.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3107-PB | 3105 | CG3107-RB | 1..800 | 17..816 | 4000 | 100 | Plus |
CG3107-PA | 3105 | CG3107-RA | 1..800 | 17..816 | 4000 | 100 | Plus |
CG3107-PC | 3105 | CG3107-RC | 1..800 | 17..816 | 4000 | 100 | Plus |
CG3107-PB | 3105 | CG3107-RB | 800..897 | 815..912 | 490 | 100 | Plus |
CG3107-PA | 3105 | CG3107-RA | 800..897 | 815..912 | 490 | 100 | Plus |
CG3107-PC | 3105 | CG3107-RC | 800..897 | 815..912 | 490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:28:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3107-RD | 3966 | CG3107-RD | 824..1734 | 16..924 | 4505 | 99.8 | Plus |
CG3107-RC | 3156 | CG3107-RC | 14..924 | 16..924 | 4505 | 99.8 | Plus |
CG3107-RA | 3230 | CG3107-RA | 88..998 | 16..924 | 4505 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:27:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5091898..5092476 | 16..594 | 2895 | 100 | Plus |
2R | 25286936 | 2R | 5092525..5092858 | 593..924 | 1570 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:28:00 has no hits.
BO10602.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:43:40 Download gff for
BO10602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-PB | 1..910 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:58:50 Download gff for
BO10602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-PC | 1..910 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:45:36 Download gff for
BO10602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-RB | 185..1099 | 10..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:19 Download gff for
BO10602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-RA | 84..998 | 10..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:19 Download gff for
BO10602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5091894..5092476 | 10..594 | 99 | -> | Plus |
2R | 5092527..5092858 | 595..924 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:45:36 Download gff for
BO10602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 979399..979981 | 10..594 | 99 | -> | Plus |
arm_2R | 980032..980363 | 595..924 | 99 | | Plus |
BO10602.complete Sequence
3136 bp (3136 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631810
> BO10602.complete
GAAGTTATCAGTCGACATGTTAAAAGGTGGAATGTTATCGCGGTGGAAGA
TGTGGTCTCCACAATACAAAATCTTGAGAAATCACCTTATAAATTTCAAG
TCGGTGTCCACATATAAGAACATTTCTGGCGTCAATACCAAGCAGCCCAA
ATCTCCACGACAATTTGGTTGCATGCCACATGTAACTAAGAAAAGAAAAT
ACAAGTATGAAGAGGGAAAGACATACCATGGCTTCCAATGCGAACGTGTG
GAACACATTTCTGAATTTGAACTTACGTCCTATACTTTTCGATATGAGCG
CACGGGTACAGAATTATGGCATATCGACCGAAATGATTCAAACAACGTAT
TTTCCATTAATTTTCGAACCACGCCCTTTGATTCTACTGGTCTACCTCAT
ATTTTAGAGCATTTATCGTTGTGCGGTTCACAAAAATATCCTGTCAGGGA
CCCTTTCTTCAAAATGCTTAACCGCTCGGTAGCGACATTTATGAATGCAA
TGACTGGTCCAGATTATACTATTTATCCTTTTTCGACGATGAATGAGATA
GATTTTAGGAATTTGCAACATATTTATTTAGATGCCGTATTCAGACCAAA
CCTGGCGTATTTCGATTTTCTTCAAGAGGGCTGGAGGCTAGAAAACAAAG
ATATATTCGATAAACAATCGAAGCTTGTAATCAAAGGAGTTGTTTATAAC
GAAATGAAAGGTGCGTTTTCTGAAAACGCGCAGGTATTTAGTCAGAATTT
ACTCAATAATATTTTTCCTGATCACACATATCGACATGTGTCTGGCGGAA
ATCCATTGGAAATACCCAAGTTAGCATACAACGATTTAGTTGAATTCCAC
AAAAAATACTATCATCCAAGTAATGCTCGCATATATTCCTACGGATTATT
TGATGCAAGTAAAACCCTCGCACTTCTCGACGAGGAGTATTTATCAGATC
AAAGCTGGGTTGACAACTCTTACAGTTTAATACGTCAGCAAGAGCGTTGG
ACTCAGCCTCGTCTTGTACATATATCCAGTAGACTAGATAACATGGGTAC
AACAATTGATCGACAGAACCAAATTGCTATTGCACTGCTGATGTGTGATG
CAACCAATATACAAGAAAGTTTTGAATTACACGTGCTATCTGAGGTACTT
ATTCGTGGGCCTAACTCCCCTTTTTACAAAAACCTTATAGAACCAAATTT
TTCCGGTGGATACAATCAAACCACTGGATATTCATCGGATACTAAGGACA
CAACCTTCGTCGTTGGATTACAAGACCTTCGAGTTGAAGACTTCAAAAAA
TGCATTGAAATTTTTGACAAAACCATTATTAATTCTATGAATGACGGGTT
TGATTCCCAGCATGTTGAAAGTGTTCTGCACAATCTTGAGTTGTCTTTAA
AGCACCAGAATCCGAACTTCGGAAATACTTTGCTTTTTAATTCCACAGCA
TTATGGAATCATGATGGCGATGTAGTCAGTAATCTCCGCGTATCAGATAT
GATATCAGGGCTTCGGGAAAGCATAAGCCAGAATAAAAAATATTTCCAAG
AGAAAATAGAGAAATATTTCGCCAATAACAATCATAGACTAACATTAACT
ATGTCACCTGATGAGGCATATGAGGATAAATTCAAACAGGCCGAGTTGGA
GTTGGTAGAACAAAAAGTAAAACTTTTGGATGAAGTTAAGATTGAAAAAA
TATATGAGAGAGGATTAATATTGGATTCATATCAGAAGGCTGAGTCAAAT
ACTGATCTTTTACCTTGTCTGACAATGAATGATGTAAGAGATCCACCAAA
ATGGCCTAAGCTATTCATACAAAATGTTCAAAATGTTCGGACCCAGATTT
GCAAGGTTCCGACCAATGAAATTACTTATTTTAAGTGCATGTTTAATATA
ACAGGACTAAGTCATGAAGAAACTCAGCTTATGCCGCTTTTTTGCAATGT
TATTAGTGCAATGGGCACCACAAACTATAATTATCGGGAGTTCGATAAGC
ACATCCTTTTAAAAACCGGTGGATTTGATTTTAAGTTACACTTAATTGAA
GATGTTAGGGATTCAAAAAGTTACAGTCTAAGCGTAATGATAAACACACA
TGCACTTAATAACAATGTTCCAGAGATGTTTGCCTTGTGCCAAGAGTTGA
TTAAAAATGTTAGGTTTGATGACTCGGAGCGACTTAAAATGCTTATAGAA
AATTATATATCATATATATCTGTGGGAGTGGCTAGTTCTGGTCATTTATA
TGCTATGTTGGGAGCAACATCACAAGTGTGTGATGCTGGTAAACTCAAAT
CGCTACTATATGGGGTAGATCATATAGACTTTATGAAAAATTTTGTACAT
TCTACAAGCACGGTAGATATATGTGATAAATTGTCGACAATTGCATCAAA
AGTTTTTAACAAGGATAATATGCGTGGCGCCATTAACACAACACAATCTT
ATGAGCCATCGGCTATAAGTAATTACGAAAAATTTTTGGAGAGCCTGCCA
ACATTTGGGAAAACACAAACAAGTCGAAATATCCATTATTTGGACCCTAG
CTGTCAACAATACGTGATGAACATACCAGTTAATTACTGTGCTAAAGCTT
TGTTCACAGTCCCATATCTCCACCAAGACCATCCAACACTGCGAGTTTTG
GCAAAATTGCTATCAGCCAAATATCTATTGCCTGTTATTCGCGAGAAGAA
TGGCGCTTACGGAGCTGGTGCGAAAATCAGCTCAGACGGGATTTTCAGTT
TTTATAGTTATCGAGATCCAAATTCAACTAAAACGCTTAACGCTTTTGAT
GAAACTTATAAATGGTTACGTGCAAATCAAAATGTAATTGACCAACAGTC
TCTTTTTGAGTCGAAGCTTGGTGTGTTGCAGCAATTAGACACTCCAATAG
CACCTGGAAATATTGGCATCGATTATTTCCTTTATGAAGTGTCACAAGAG
GATTTTGAGAGCTATCGCTCCCGAATGCTCTCTGTAACTATTGATGATCT
GCAATGCGCTATAGAAAATTATTTTGGAAAAGAGTCCATGCATTATGGAA
AATGCATTTTGGGTCCAGTCAATGCAAATTTGGAGCTTGAAACTAGTCAC
AAATGGATAATAAATAATGCAAGCTTTCTAGACCAT
BO10602.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:37:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3107-RD | 3105 | CG3107-PD | 1..3102 | 17..3118 | 15510 | 100 | Plus |
CG3107-RC | 3105 | CG3107-PC | 1..3102 | 17..3118 | 15510 | 100 | Plus |
CG3107-RA | 3105 | CG3107-PA | 1..3102 | 17..3118 | 15510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:37:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3107-RD | 3966 | CG3107-RD | 824..3926 | 16..3118 | 15515 | 100 | Plus |
CG3107-RC | 3156 | CG3107-RC | 14..3116 | 16..3118 | 15515 | 100 | Plus |
CG3107-RA | 3230 | CG3107-RA | 88..3190 | 16..3118 | 15515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:36:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5092525..5095050 | 593..3118 | 12630 | 100 | Plus |
2R | 25286936 | 2R | 5091898..5092476 | 16..594 | 2895 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:36:59 has no hits.
BO10602.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:23 Download gff for
BO10602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-RC | 1..3105 | 17..3122 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:45 Download gff for
BO10602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-RC | 25..3136 | 10..3125 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:33 Download gff for
BO10602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-RB | 195..3291 | 22..3120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:23 Download gff for
BO10602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-RC | 25..3136 | 10..3125 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:38 Download gff for
BO10602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3107-RA | 94..3190 | 22..3120 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:38 Download gff for
BO10602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5091904..5092476 | 22..594 | 100 | -> | Plus |
2R | 5092527..5095050 | 595..3120 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:33 Download gff for
BO10602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 979409..979981 | 22..594 | 100 | -> | Plus |
arm_2R | 980032..982555 | 595..3120 | 99 | | Plus |
BO10602.pep Sequence
Translation from 16 to 3136
> BO10602.pep
MLKGGMLSRWKMWSPQYKILRNHLINFKSVSTYKNISGVNTKQPKSPRQF
GCMPHVTKKRKYKYEEGKTYHGFQCERVEHISEFELTSYTFRYERTGTEL
WHIDRNDSNNVFSINFRTTPFDSTGLPHILEHLSLCGSQKYPVRDPFFKM
LNRSVATFMNAMTGPDYTIYPFSTMNEIDFRNLQHIYLDAVFRPNLAYFD
FLQEGWRLENKDIFDKQSKLVIKGVVYNEMKGAFSENAQVFSQNLLNNIF
PDHTYRHVSGGNPLEIPKLAYNDLVEFHKKYYHPSNARIYSYGLFDASKT
LALLDEEYLSDQSWVDNSYSLIRQQERWTQPRLVHISSRLDNMGTTIDRQ
NQIAIALLMCDATNIQESFELHVLSEVLIRGPNSPFYKNLIEPNFSGGYN
QTTGYSSDTKDTTFVVGLQDLRVEDFKKCIEIFDKTIINSMNDGFDSQHV
ESVLHNLELSLKHQNPNFGNTLLFNSTALWNHDGDVVSNLRVSDMISGLR
ESISQNKKYFQEKIEKYFANNNHRLTLTMSPDEAYEDKFKQAELELVEQK
VKLLDEVKIEKIYERGLILDSYQKAESNTDLLPCLTMNDVRDPPKWPKLF
IQNVQNVRTQICKVPTNEITYFKCMFNITGLSHEETQLMPLFCNVISAMG
TTNYNYREFDKHILLKTGGFDFKLHLIEDVRDSKSYSLSVMINTHALNNN
VPEMFALCQELIKNVRFDDSERLKMLIENYISYISVGVASSGHLYAMLGA
TSQVCDAGKLKSLLYGVDHIDFMKNFVHSTSTVDICDKLSTIASKVFNKD
NMRGAINTTQSYEPSAISNYEKFLESLPTFGKTQTSRNIHYLDPSCQQYV
MNIPVNYCAKALFTVPYLHQDHPTLRVLAKLLSAKYLLPVIREKNGAYGA
GAKISSDGIFSFYSYRDPNSTKTLNAFDETYKWLRANQNVIDQQSLFESK
LGVLQQLDTPIAPGNIGIDYFLYEVSQEDFESYRSRMLSVTIDDLQCAIE
NYFGKESMHYGKCILGPVNANLELETSHKWIINNASFLDH
BO10602.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3107-PD | 1034 | CG3107-PD | 1..1034 | 1..1034 | 5467 | 100 | Plus |
CG3107-PC | 1034 | CG3107-PC | 1..1034 | 1..1034 | 5467 | 100 | Plus |
CG3107-PA | 1034 | CG3107-PA | 1..1034 | 1..1034 | 5467 | 100 | Plus |
CG3107-PB | 1034 | CG3107-PB | 1..1034 | 1..1034 | 5467 | 100 | Plus |