Clone BO10602 Report

Search the DGRC for BO10602

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:106
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCG3107-RA
Protein status:BO10602.pep: validated full length
Sequenced Size:3136

Clone Sequence Records

BO10602.3prime Sequence

948 bp (820 high quality bases) assembled on 2006-04-19

> BO10602.3prime
ATGGTCTAGAAAGCTTGCATTATTTATTATCCATTTGTGACTAGTTTCAA
GCTCCAAATTTGCATTGACTGGACCCAAAATGCATTTTCCATAATGCATG
GACTCTTTTCCAAAATAATTTTCTATAGCGCATTGCAGATCATCAATAGT
TACAGAGAGCATTCGGGAGCGATAGCTCTCAAAATCCTCTTGTGACACTT
CATAAAGGAAATAATCGATGCCAATATTTCCAGGTGCTATTGGAGTGTCT
AATTGCTGCAACACACCAAGCTTCGACTCAAAAAGAGACTGTTGGTCAAT
TACATTTTGATTTGCACGTAACCATTTATAAGTTTCATCAAAAGCGTTAA
GCGTTTTAGTTGAATTTGGATCTCGATAACTATAAAAACTGAAAATCCCG
TCTGAGCTGATTTTCGCACCAGCTCCGTAAGCGCCATTCTTCTCGCGAAT
AACAGGCAATAGATATTTGGCTGATAGCAATTTTGCCAAAACTCGCAGTG
TTGGATGGTCTTGGTGGAGATATGGGACTGTGAACAAAGCTTTAGCACAG
TAATTAACTGGTATGTTCATCACGTATTGTTGACAGCTAGGGTCCAAATA
ATGGATATTTCGACTTGTTTGTGTTTTCCCAAATGTTGGCAGGCTCTCCA
AAAATTTTTCGTAATTACTTATAGCCGATGGCTCATAAGATTGTGTTGTG
TTAATGGCGCCACGCATATTATCCTTGTTAAAAACTTTTGATGCAATTGT
CGACAATTTATCACATATATCTACCGTGCTTGTAGAATGTACAAAATTTT
TCATAAAGTCTATATGATCTACCCCATATAGTAGCGATTTGAGTTTACCA
GCATCACACACTTGTGATGTTGCTCCCAACATAACATATAAATGACCAGA
ACTAGCCACTCCCACAGATATATATGATATATAATTTTTCTATAAGCA

BO10602.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3107-PB 3105 CG3107-RB 2183..3102 938..19 4575 99.8 Minus
CG3107-PA 3105 CG3107-RA 2183..3102 938..19 4575 99.8 Minus
CG3107-PC 3105 CG3107-RC 2183..3102 938..19 4575 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3107-RD 3966 CG3107-RD 2998..3926 948..19 4610 99.8 Minus
CG3107-RC 3156 CG3107-RC 2188..3116 948..19 4610 99.8 Minus
CG3107-RA 3230 CG3107-RA 2262..3190 948..19 4610 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:15:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5094131..5095050 938..19 4585 99.9 Minus
Blast to na_te.dros performed on 2015-02-06 17:15:44 has no hits.

BO10602.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:43:39 Download gff for BO10602.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3107-PB 2175..3105 15..947 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:58:48 Download gff for BO10602.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3107-PC 2175..3105 15..947 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:30:54 Download gff for BO10602.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3107-RB 2364..3296 12..947 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:27:45 Download gff for BO10602.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3107-RA 2263..3195 12..947 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:27:45 Download gff for BO10602.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 5094123..5095055 12..947 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:30:54 Download gff for BO10602.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 981628..982560 12..947 99   Minus

BO10602.5prime Sequence

924 bp (795 high quality bases) assembled on 2006-04-19

> BO10602.5prime
GAAGTTATCAGTCGACATGTTAAAAGGTGGAATGTTATCGCGGTGGAAGA
TGTGGTCTCCACAATACAAAATCTTGAGAAATCACCTTATAAATTTCAAG
TCGGTGTCCACATATAAGAACATTTCTGGCGTCAATACCAAGCAGCCCAA
ATCTCCACGACAATTTGGTTGCATGCCACATGTAACTAAGAAAAGAAAAT
ACAAGTATGAAGAGGGAAAGACATACCATGGCTTCCAATGCGAACGTGTG
GAACACATTTCTGAATTTGAACTTACGTCCTATACTTTTCGATATGAGCG
CACGGGTACAGAATTATGGCATATCGACCGAAATGATTCAAACAACGTAT
TTTCCATTAATTTTCGAACCACGCCCTTTGATTCTACTGGTCTACCTCAT
ATTTTAGAGCATTTATCGTTGTGCGGTTCACAAAAATATCCTGTCAGGGA
CCCTTTCTTCAAAATGCTTAACCGCTCGGTAGCGACATTTATGAATGCAA
TGACTGGTCCAGATTATACTATTTATCCTTTTTCGACGATGAATGAGATA
GATTTTAGGAATTTGCAACATATTTATTTAGATGCCGTATTCAGACCAAA
CCTGGCGTATTTCGATTTTCTTCAAGAGGGCTGGAGGCTAGAAAACAAAG
ATATATTCGATAAACAATCGAAGCTTGTAATCAAAGGAGTTGTTTATAAC
GAAATGAAAGGTGCGTTTTCTGAAAACGCGCAGGTATTTAGTCAGAATTT
ACTCAATAATATTTTTCCTGATCACACATATCGACATGTGTCTGGCGGAA
ATCCATTGGAAATACCAAGTTAGCATACAACGATTTAGTTGAATTCCACA
AAAAATACTATCATCCAAGTAATGCTCGCATATATTCCTACGGATTATTT
GATGCAAGTAAACCCTCGCACTTC

BO10602.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3107-PB 3105 CG3107-RB 1..800 17..816 4000 100 Plus
CG3107-PA 3105 CG3107-RA 1..800 17..816 4000 100 Plus
CG3107-PC 3105 CG3107-RC 1..800 17..816 4000 100 Plus
CG3107-PB 3105 CG3107-RB 800..897 815..912 490 100 Plus
CG3107-PA 3105 CG3107-RA 800..897 815..912 490 100 Plus
CG3107-PC 3105 CG3107-RC 800..897 815..912 490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG3107-RD 3966 CG3107-RD 824..1734 16..924 4505 99.8 Plus
CG3107-RC 3156 CG3107-RC 14..924 16..924 4505 99.8 Plus
CG3107-RA 3230 CG3107-RA 88..998 16..924 4505 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5091898..5092476 16..594 2895 100 Plus
2R 25286936 2R 5092525..5092858 593..924 1570 99.4 Plus
Blast to na_te.dros performed on 2015-02-12 04:28:00 has no hits.

BO10602.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:43:40 Download gff for BO10602.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3107-PB 1..910 17..924 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:58:50 Download gff for BO10602.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3107-PC 1..910 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:45:36 Download gff for BO10602.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3107-RB 185..1099 10..924 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:19 Download gff for BO10602.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3107-RA 84..998 10..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:19 Download gff for BO10602.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5091894..5092476 10..594 99 -> Plus
2R 5092527..5092858 595..924 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:45:36 Download gff for BO10602.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 979399..979981 10..594 99 -> Plus
arm_2R 980032..980363 595..924 99   Plus

BO10602.complete Sequence

3136 bp (3136 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631810

> BO10602.complete
GAAGTTATCAGTCGACATGTTAAAAGGTGGAATGTTATCGCGGTGGAAGA
TGTGGTCTCCACAATACAAAATCTTGAGAAATCACCTTATAAATTTCAAG
TCGGTGTCCACATATAAGAACATTTCTGGCGTCAATACCAAGCAGCCCAA
ATCTCCACGACAATTTGGTTGCATGCCACATGTAACTAAGAAAAGAAAAT
ACAAGTATGAAGAGGGAAAGACATACCATGGCTTCCAATGCGAACGTGTG
GAACACATTTCTGAATTTGAACTTACGTCCTATACTTTTCGATATGAGCG
CACGGGTACAGAATTATGGCATATCGACCGAAATGATTCAAACAACGTAT
TTTCCATTAATTTTCGAACCACGCCCTTTGATTCTACTGGTCTACCTCAT
ATTTTAGAGCATTTATCGTTGTGCGGTTCACAAAAATATCCTGTCAGGGA
CCCTTTCTTCAAAATGCTTAACCGCTCGGTAGCGACATTTATGAATGCAA
TGACTGGTCCAGATTATACTATTTATCCTTTTTCGACGATGAATGAGATA
GATTTTAGGAATTTGCAACATATTTATTTAGATGCCGTATTCAGACCAAA
CCTGGCGTATTTCGATTTTCTTCAAGAGGGCTGGAGGCTAGAAAACAAAG
ATATATTCGATAAACAATCGAAGCTTGTAATCAAAGGAGTTGTTTATAAC
GAAATGAAAGGTGCGTTTTCTGAAAACGCGCAGGTATTTAGTCAGAATTT
ACTCAATAATATTTTTCCTGATCACACATATCGACATGTGTCTGGCGGAA
ATCCATTGGAAATACCCAAGTTAGCATACAACGATTTAGTTGAATTCCAC
AAAAAATACTATCATCCAAGTAATGCTCGCATATATTCCTACGGATTATT
TGATGCAAGTAAAACCCTCGCACTTCTCGACGAGGAGTATTTATCAGATC
AAAGCTGGGTTGACAACTCTTACAGTTTAATACGTCAGCAAGAGCGTTGG
ACTCAGCCTCGTCTTGTACATATATCCAGTAGACTAGATAACATGGGTAC
AACAATTGATCGACAGAACCAAATTGCTATTGCACTGCTGATGTGTGATG
CAACCAATATACAAGAAAGTTTTGAATTACACGTGCTATCTGAGGTACTT
ATTCGTGGGCCTAACTCCCCTTTTTACAAAAACCTTATAGAACCAAATTT
TTCCGGTGGATACAATCAAACCACTGGATATTCATCGGATACTAAGGACA
CAACCTTCGTCGTTGGATTACAAGACCTTCGAGTTGAAGACTTCAAAAAA
TGCATTGAAATTTTTGACAAAACCATTATTAATTCTATGAATGACGGGTT
TGATTCCCAGCATGTTGAAAGTGTTCTGCACAATCTTGAGTTGTCTTTAA
AGCACCAGAATCCGAACTTCGGAAATACTTTGCTTTTTAATTCCACAGCA
TTATGGAATCATGATGGCGATGTAGTCAGTAATCTCCGCGTATCAGATAT
GATATCAGGGCTTCGGGAAAGCATAAGCCAGAATAAAAAATATTTCCAAG
AGAAAATAGAGAAATATTTCGCCAATAACAATCATAGACTAACATTAACT
ATGTCACCTGATGAGGCATATGAGGATAAATTCAAACAGGCCGAGTTGGA
GTTGGTAGAACAAAAAGTAAAACTTTTGGATGAAGTTAAGATTGAAAAAA
TATATGAGAGAGGATTAATATTGGATTCATATCAGAAGGCTGAGTCAAAT
ACTGATCTTTTACCTTGTCTGACAATGAATGATGTAAGAGATCCACCAAA
ATGGCCTAAGCTATTCATACAAAATGTTCAAAATGTTCGGACCCAGATTT
GCAAGGTTCCGACCAATGAAATTACTTATTTTAAGTGCATGTTTAATATA
ACAGGACTAAGTCATGAAGAAACTCAGCTTATGCCGCTTTTTTGCAATGT
TATTAGTGCAATGGGCACCACAAACTATAATTATCGGGAGTTCGATAAGC
ACATCCTTTTAAAAACCGGTGGATTTGATTTTAAGTTACACTTAATTGAA
GATGTTAGGGATTCAAAAAGTTACAGTCTAAGCGTAATGATAAACACACA
TGCACTTAATAACAATGTTCCAGAGATGTTTGCCTTGTGCCAAGAGTTGA
TTAAAAATGTTAGGTTTGATGACTCGGAGCGACTTAAAATGCTTATAGAA
AATTATATATCATATATATCTGTGGGAGTGGCTAGTTCTGGTCATTTATA
TGCTATGTTGGGAGCAACATCACAAGTGTGTGATGCTGGTAAACTCAAAT
CGCTACTATATGGGGTAGATCATATAGACTTTATGAAAAATTTTGTACAT
TCTACAAGCACGGTAGATATATGTGATAAATTGTCGACAATTGCATCAAA
AGTTTTTAACAAGGATAATATGCGTGGCGCCATTAACACAACACAATCTT
ATGAGCCATCGGCTATAAGTAATTACGAAAAATTTTTGGAGAGCCTGCCA
ACATTTGGGAAAACACAAACAAGTCGAAATATCCATTATTTGGACCCTAG
CTGTCAACAATACGTGATGAACATACCAGTTAATTACTGTGCTAAAGCTT
TGTTCACAGTCCCATATCTCCACCAAGACCATCCAACACTGCGAGTTTTG
GCAAAATTGCTATCAGCCAAATATCTATTGCCTGTTATTCGCGAGAAGAA
TGGCGCTTACGGAGCTGGTGCGAAAATCAGCTCAGACGGGATTTTCAGTT
TTTATAGTTATCGAGATCCAAATTCAACTAAAACGCTTAACGCTTTTGAT
GAAACTTATAAATGGTTACGTGCAAATCAAAATGTAATTGACCAACAGTC
TCTTTTTGAGTCGAAGCTTGGTGTGTTGCAGCAATTAGACACTCCAATAG
CACCTGGAAATATTGGCATCGATTATTTCCTTTATGAAGTGTCACAAGAG
GATTTTGAGAGCTATCGCTCCCGAATGCTCTCTGTAACTATTGATGATCT
GCAATGCGCTATAGAAAATTATTTTGGAAAAGAGTCCATGCATTATGGAA
AATGCATTTTGGGTCCAGTCAATGCAAATTTGGAGCTTGAAACTAGTCAC
AAATGGATAATAAATAATGCAAGCTTTCTAGACCAT

BO10602.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3107-RD 3105 CG3107-PD 1..3102 17..3118 15510 100 Plus
CG3107-RC 3105 CG3107-PC 1..3102 17..3118 15510 100 Plus
CG3107-RA 3105 CG3107-PA 1..3102 17..3118 15510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3107-RD 3966 CG3107-RD 824..3926 16..3118 15515 100 Plus
CG3107-RC 3156 CG3107-RC 14..3116 16..3118 15515 100 Plus
CG3107-RA 3230 CG3107-RA 88..3190 16..3118 15515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5092525..5095050 593..3118 12630 100 Plus
2R 25286936 2R 5091898..5092476 16..594 2895 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:36:59 has no hits.

BO10602.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:23 Download gff for BO10602.complete
Subject Subject Range Query Range Percent Splice Strand
CG3107-RC 1..3105 17..3122 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:45 Download gff for BO10602.complete
Subject Subject Range Query Range Percent Splice Strand
CG3107-RC 25..3136 10..3125 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:33 Download gff for BO10602.complete
Subject Subject Range Query Range Percent Splice Strand
CG3107-RB 195..3291 22..3120 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:23 Download gff for BO10602.complete
Subject Subject Range Query Range Percent Splice Strand
CG3107-RC 25..3136 10..3125 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:38 Download gff for BO10602.complete
Subject Subject Range Query Range Percent Splice Strand
CG3107-RA 94..3190 22..3120 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:38 Download gff for BO10602.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5091904..5092476 22..594 100 -> Plus
2R 5092527..5095050 595..3120 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:33 Download gff for BO10602.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 979409..979981 22..594 100 -> Plus
arm_2R 980032..982555 595..3120 99   Plus

BO10602.pep Sequence

Translation from 16 to 3136

> BO10602.pep
MLKGGMLSRWKMWSPQYKILRNHLINFKSVSTYKNISGVNTKQPKSPRQF
GCMPHVTKKRKYKYEEGKTYHGFQCERVEHISEFELTSYTFRYERTGTEL
WHIDRNDSNNVFSINFRTTPFDSTGLPHILEHLSLCGSQKYPVRDPFFKM
LNRSVATFMNAMTGPDYTIYPFSTMNEIDFRNLQHIYLDAVFRPNLAYFD
FLQEGWRLENKDIFDKQSKLVIKGVVYNEMKGAFSENAQVFSQNLLNNIF
PDHTYRHVSGGNPLEIPKLAYNDLVEFHKKYYHPSNARIYSYGLFDASKT
LALLDEEYLSDQSWVDNSYSLIRQQERWTQPRLVHISSRLDNMGTTIDRQ
NQIAIALLMCDATNIQESFELHVLSEVLIRGPNSPFYKNLIEPNFSGGYN
QTTGYSSDTKDTTFVVGLQDLRVEDFKKCIEIFDKTIINSMNDGFDSQHV
ESVLHNLELSLKHQNPNFGNTLLFNSTALWNHDGDVVSNLRVSDMISGLR
ESISQNKKYFQEKIEKYFANNNHRLTLTMSPDEAYEDKFKQAELELVEQK
VKLLDEVKIEKIYERGLILDSYQKAESNTDLLPCLTMNDVRDPPKWPKLF
IQNVQNVRTQICKVPTNEITYFKCMFNITGLSHEETQLMPLFCNVISAMG
TTNYNYREFDKHILLKTGGFDFKLHLIEDVRDSKSYSLSVMINTHALNNN
VPEMFALCQELIKNVRFDDSERLKMLIENYISYISVGVASSGHLYAMLGA
TSQVCDAGKLKSLLYGVDHIDFMKNFVHSTSTVDICDKLSTIASKVFNKD
NMRGAINTTQSYEPSAISNYEKFLESLPTFGKTQTSRNIHYLDPSCQQYV
MNIPVNYCAKALFTVPYLHQDHPTLRVLAKLLSAKYLLPVIREKNGAYGA
GAKISSDGIFSFYSYRDPNSTKTLNAFDETYKWLRANQNVIDQQSLFESK
LGVLQQLDTPIAPGNIGIDYFLYEVSQEDFESYRSRMLSVTIDDLQCAIE
NYFGKESMHYGKCILGPVNANLELETSHKWIINNASFLDH

BO10602.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3107-PD 1034 CG3107-PD 1..1034 1..1034 5467 100 Plus
CG3107-PC 1034 CG3107-PC 1..1034 1..1034 5467 100 Plus
CG3107-PA 1034 CG3107-PA 1..1034 1..1034 5467 100 Plus
CG3107-PB 1034 CG3107-PB 1..1034 1..1034 5467 100 Plus