Clone BO10605 Report

Search the DGRC for BO10605

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:106
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptGp93-RA
Protein status:BO10605.pep: Imported from assembly
Sequenced Size:2395

Clone Sequence Records

BO10605.3prime Sequence

908 bp (866 high quality bases) assembled on 2006-04-19

> BO10605.3prime
ATGGTCTAGAAAGCTTGCCAGCTCGTCGTGCTGCTGCTCCTCCTCCTCAT
CATCGGCGTTGCCGCTCTCCTGGCTGCCGGTGGCGGTCTCCTCGGCATCA
TCCTCCTCCTCCTCGTCGAACTCCACCTGCTCGTCTTGGGAGACACCCAA
GGTCTGGCGCATCATCTGCTCAATACTGTCGGCGAACTGCGAAGTCTCCT
GGAGCATGTATCCAGACCGCAGGGTGGCGGTGCGGAACATCATCACAGCC
ATGTCCTTGGCGGTGTCATCGGCCTCGTCGGCCTCCACGCGGCGCAGCAG
CTCGCGCATCAGCGGATGCCTGGGATTGATCTCGAGCGTTTTCTTCTGGT
TGAGGTAGTAGGTGCGCTGAGGATCGTCGGACTTCTGGTGGGCGTTGGAC
ATGGCCAGACGCTCCATGTTGCCGGTCCAGCCGAAGACGCCGGCCACGAG
GGCGCATGGCGAGTTGCTCAGACGCTCGGAAACCTGGGCCTTGGAGATCT
GATCCTTGAGTGCCACATCGTTCAGCCACTTGACCAGCGGCTCGAAGGTG
CTCTTTAGCGACTCGAAGTTCTTCTTGCTCTTCTCGGACTCGTTCAGCTG
GAATCCCTCCTTGGCCACGTTCTGGAACTTCTTGCCATCGAACTCGGGCA
GCGCGGAGATGCAGTACTCGTCGACGGCCTCCACCAGATACAGCACCTCG
TATCCCTTGCTCAGCAGACGCTCGACGAACGGCGACTTCTCGACCTCAGC
GCGGTTGGCACCAGCGATGTAGTAGATGTGCTCCTGCTTGGCCTTCATGC
GCTCCTTGTACTCCGCCAGCGAGGTGACGCCCTTGCCGTTGGAGGTCTGG
AAGCGGAGCAGCTTGGCGAGACGCGATCGGTTGCTGGGATCCTCATCACG
CCCATTTG

BO10605.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5520-PA 2364 Gp93-RA 1486..2361 894..19 4380 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
Gp93-RA 2841 CG5520-RA 1626..2512 904..19 4410 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27950936..27951822 904..19 4385 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 20:00:23 has no hits.

BO10605.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:43:45 Download gff for BO10605.3prime
Subject Subject Range Query Range Percent Splice Strand
Gp93-PA 1470..2364 15..908 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:58:57 Download gff for BO10605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5520-PA 1470..2364 15..908 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:40:07 Download gff for BO10605.3prime
Subject Subject Range Query Range Percent Splice Strand
Gp93-RA 1621..2521 8..908 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:43:11 Download gff for BO10605.3prime
Subject Subject Range Query Range Percent Splice Strand
Gp93-RA 1621..2521 8..908 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:11 Download gff for BO10605.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27950931..27951831 8..908 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:40:07 Download gff for BO10605.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23776653..23777553 8..908 99   Minus

BO10605.5prime Sequence

883 bp (880 high quality bases) assembled on 2006-04-19

> BO10605.5prime
GAAGTTATCAGTCGACATGAAGTACTTTTTGCTGGTGGGCCTGCTGCTCC
TAGCAGGCATCAATCAAATAGCCGCCGATGACGAGGCCGCCACAACGGAG
ACCATCGACCTTGATCTGGGCTCCTTCAAGGAGGGCTCCCGCACCGATGC
CGAGACCCTGAAGCGCGAGGAGGAGGCCATCCAGCTGGACGGCCTGAACG
TGGCGCAGCTGAAGGAAATTCGCGAGAAGGCGAAGAAGTTTACTTTCCAA
ACGGAGGTCAACCGCATGATGAAGCTGATTATCAACTCGCTTTACCGCAA
CAAGGAGATCTTCCTGCGTGAATTGATATCCAACGCCTCCGATGCCATCG
ACAAGATCCGCCTATTGGCTCTGTCCAACAGCAAGGAGCTGGAAACGAAT
CCGGAGCTGCACATCCGCATTAAGGCCGACAAGGAGAACAAGGCGTTGCA
CATCATGGACTCGGGTATCGGCATGACTCACCAGGATCTGATCAATAACC
TGGGTACAATTGCCAAGTCCGGCACTGCCGATTTTCTGGCCAAGATGCAG
GATCCCAGCAAGTCGGAGGGACTCGATATGAACGACATGATTGGACAGTT
CGGTGTGGGCTTTTACTCCGCTTTCTTGGTCGCCGATCGTGTAGTGGTGA
CCACCAAGCACAACGACGACAAACAGTACATCTGGGAGTCGGATGCCAAC
AGCTTCAGCATCACCGAGGATCCCCGTGGCGATACTCTGAAGCGAGGATC
CGTGATCTCGCTGTATCTGAAGGAAGAAGCCCAGGACTTCCTGGAGGAGG
ACACCGTGCGCGAGCTCATCCGCAAGTACTCGCAGTTCATCAACTTCCCC
ATCCGCATGTGGTCCAGCAAGACCGTCGAGGAA

BO10605.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5520-PA 2364 Gp93-RA 1..866 17..882 4330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
Gp93-RA 2841 CG5520-RA 151..1017 16..882 4335 100 Plus
Hsp83-RB 2960 CG1242-RB 481..543 299..361 195 87.3 Plus
Hsp83-RA 2713 CG1242-RA 234..296 299..361 195 87.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27949340..27949994 228..882 3275 100 Plus
3R 32079331 3R 27948982..27949073 55..146 460 100 Plus
3R 32079331 3R 27949170..27949254 146..230 425 100 Plus
3R 32079331 3R 27948861..27948902 16..57 210 100 Plus
3L 28110227 3L 3194580..3194642 299..361 195 87.3 Plus
Blast to na_te.dros performed on 2015-02-11 14:46:19 has no hits.

BO10605.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:43:46 Download gff for BO10605.5prime
Subject Subject Range Query Range Percent Splice Strand
Gp93-PA 1..865 17..881 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:58:58 Download gff for BO10605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5520-PA 1..865 17..881 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:48:04 Download gff for BO10605.5prime
Subject Subject Range Query Range Percent Splice Strand
Gp93-RA 144..1017 9..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:06:56 Download gff for BO10605.5prime
Subject Subject Range Query Range Percent Splice Strand
Gp93-RA 144..1017 9..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:06:56 Download gff for BO10605.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27948854..27948901 9..56 91 -> Plus
3R 27948984..27949073 57..146 100 -> Plus
3R 27949171..27949253 147..229 100 -> Plus
3R 27949342..27949994 230..883 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:48:04 Download gff for BO10605.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23774576..23774623 9..56 91 -> Plus
arm_3R 23774706..23774795 57..146 100 -> Plus
arm_3R 23774893..23774975 147..229 100 -> Plus
arm_3R 23775064..23775716 230..883 99   Plus

BO10605.complete Sequence

2395 bp assembled on 2008-11-10

GenBank Submission: KX797345

> BO10605.complete
GAAGTTATCAGTCGACATGAAGTACTTTTTGCTGGTGGGCCTGCTGCTCC
TAGCAGGCATCAATCAAATAGCCGCCGATGACGAGGCCGCCACAACGGAG
ACCATCGACCTTGATCTGGGCTCCTTCAAGGAGGGCTCCCGCACCGATGC
CGAGACCCTGAAGCGCGAGGAGGAGGCCATCCAGCTGGACGGCCTGAACG
TGGCGCAGCTGAAGGAAATTCGCGAGAAGGCGAAGAAGTTTACTTTCCAA
ACGGAGGTCAACCGCATGATGAAGCTGATTATCAACTCGCTTTACCGCAA
CAAGGAGATCTTCCTGCGTGAATTGATATCCAACGCCTCCGATGCCATCG
ACAAGATCCGCCTATTGGCTCTGTCCAACAGCAAGGAGCTGGAAACGAAT
CCGGAGCTGCACATCCGCATTAAGGCCGACAAGGAGAACAAGGCGTTGCA
CATCATGGACTCGGGTATCGGCATGACTCACCAGGATCTGATCAATAACC
TGGGTACAATTGCCAAGTCCGGCACTGCCGATTTTCTGGCCAAGATGCAG
GATCCCAGCAAGTCGGAGGGACTCGATATGAACGACATGATTGGACAGTT
CGGTGTGGGCTTTTACTCCGCTTTCTTGGTCGCCGATCGTGTAGTGGTGA
CCACCAAGCACAACGACGACAAACAGTACATCTGGGAGTCGGATGCCAAC
AGCTTCAGCATCACCGAGGATCCCCGTGGCGATACTCTGAAGCGAGGATC
CGTGATCTCGCTGTATCTGAAGGAAGAAGCCCAGGACTTCCTGGAGGAGG
ACACCGTGCGCGAGCTCATCCGCAAGTACTCGCAGTTCATCAACTTCCCC
ATCCGCATGTGGTCCAGCAAGACCGTCGAGGAGGAGGTGCCCGTGGAGGA
GGAGGCCAAGCCCGAGAAGAGCGAGGATGACGTGGAGGATGAGGACGCCA
AGGTCGAGGAGGCCGAAGATGAGAAGCCCAAGACCAAAAAGGTTTCGAAG
ACCACCTGGGACTGGACCCTGATCAACGACAGCAAGCCCATCTGGACGCG
CAAGCCCGCCGAAGTGACCGAGGATGAGTACACTAGCTTCTACAAGAGCC
TGACCAAGGACTCCAGCGAGCCCCTGACCCAGACGCACTTCATCGCCGAG
GGCGAGGTGACCTTCAAGAGTTTGCTCTACGTGCCCAAGGTGCAGCCATC
GGAGTCCTTCAACCGCTACGGCACCAAGTCCGACAACATTAAGCTGTACG
TGCGCCGTGTTTTCATCACCGACGAGTTCAACGACATGATGCCCAACTAC
CTGAGCTTCATTCGTGGCGTCGTCGACTCCGACGATCTGCCCCTGAACGT
TTCCCGCGAAACTCTGCAGCAGCACAAGCTCATCAAGGTGATCAAGAAGA
AGCTGGTCCGCAAGGTTCTCGATATGCTGAAGAAGATCGACAAGGAGGCG
TATGAGAAGTTCTGGAAGGAGTTCTCCACCAACATCAAATTGGGCGTGAT
GGAGGATCCCAGCAACCGATCGCGTCTCGCCAAGCTGCTCCGCTTCCAGA
CCTCCAACGGCAAGGGCGTCACCTCGCTGGCGGAGTACAAGGAGCGCATG
AAGGCCAAGCAGGAGCACATCTACTACATCGCTGGTGCCAACCGCGCTGA
GGTCGAGAAGTCGCCGTTCGTCGAGCGTCTGCTGAGCAAGGGATACGAGG
TGCTGTATCTGGTGGAGGCCGTCGACGAGTACTGCATCTCCGCGCTGCCC
GAGTTCGATGGCAAGAAGTTCCAGAACGTGGCCAAGGAGGGATTCCAGCT
GAACGAGTCCGAGAAGAGCAAGAAGAACTTCGAGTCGCTAAAGAGCACCT
TCGAGCCGCTGGTCAAGTGGCTGAACGATGTGGCACTCAAGGATCAGATC
TCCAAGGCCCAGGTTTCCGAGCGTCTGAGCAACTCGCCATGCGCCCTCGT
GGCCGGCGTCTTCGGCTGGACCGGCAACATGGAGCGTCTGGCCATGTCCA
ACGCCCACCAGAAGTCCGACGATCCTCAGCGCACCTACTACCTCAACCAG
AAGAAAACGCTCGAGATCAATCCCAGGCATCCGCTGATGCGCGAGCTGCT
GCGCCGCGTGGAGGCCGACGAGGCCGATGACACCGCCAAGGACATGGCTG
TGATGATGTTCCGCACCGCCACCCTGCGGTCTGGATACATGCTCCAGGAG
ACTTCGCAGTTCGCCGACAGTATTGAGCAGATGATGCGCCAGACCTTGGG
TGTCTCCCAAGACGAGCAGGTGGAGTTCGACGAGGAGGAGGAGGATGATG
CCGAGGAGACCGCCACCGGCAGCCAGGAGAGCGGCAACGCCGATGATGAG
GAGGAGGAGCAGCAGCACGACGAGCTGGCAAGCTTTCTAGACCAT

BO10605.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
Gp93-RA 2364 CG5520-PA 1..2361 17..2377 11805 100 Plus
Hsp83-RB 2154 CG1242-PB 1031..1206 1233..1408 265 76.7 Plus
Hsp83-RA 2154 CG1242-PA 1031..1206 1233..1408 265 76.7 Plus
Hsp83-RB 2154 CG1242-PB 82..144 299..361 195 87.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
Gp93-RA 2841 CG5520-RA 151..2512 16..2377 11810 100 Plus
Hsp83-RB 2960 CG1242-RB 1430..1605 1233..1408 265 76.7 Plus
Hsp83-RA 2713 CG1242-RA 1183..1358 1233..1408 265 76.7 Plus
Hsp83-RB 2960 CG1242-RB 481..543 299..361 195 87.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27949340..27950594 228..1482 6275 100 Plus
3R 32079331 3R 27950928..27951822 1483..2377 4475 100 Plus
3R 32079331 3R 27948982..27949073 55..146 460 100 Plus
3R 32079331 3R 27949170..27949254 146..230 425 100 Plus
3L 28110227 3L 3195529..3195704 1233..1408 265 76.7 Plus
3R 32079331 3R 27948861..27948902 16..57 210 100 Plus
3L 28110227 3L 3194580..3194642 299..361 195 87.3 Plus
Blast to na_te.dros performed on 2014-11-27 08:18:14 has no hits.

BO10605.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:20 Download gff for BO10605.complete
Subject Subject Range Query Range Percent Splice Strand
Gp93-RA 197..2574 9..2388 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:32 Download gff for BO10605.complete
Subject Subject Range Query Range Percent Splice Strand
Gp93-RA 152..2512 17..2379 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:54:58 Download gff for BO10605.complete
Subject Subject Range Query Range Percent Splice Strand
Gp93-RA 205..2565 17..2379 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:21 Download gff for BO10605.complete
Subject Subject Range Query Range Percent Splice Strand
Gp93-RA 152..2512 17..2379 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:21 Download gff for BO10605.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27948862..27948901 17..56 100 -> Plus
3R 27948984..27949073 57..146 100 -> Plus
3R 27949171..27949253 147..229 100 -> Plus
3R 27949342..27950594 230..1482 100 -> Plus
3R 27950928..27951822 1483..2379 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:32 Download gff for BO10605.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23774584..23774623 17..56 100 -> Plus
arm_3R 23774706..23774795 57..146 100 -> Plus
arm_3R 23774893..23774975 147..229 100 -> Plus
arm_3R 23775064..23776316 230..1482 100 -> Plus
arm_3R 23776650..23777544 1483..2379 99   Plus

BO10605.pep Sequence

Translation from 16 to 2395

> BO10605.pep
MKYFLLVGLLLLAGINQIAADDEAATTETIDLDLGSFKEGSRTDAETLKR
EEEAIQLDGLNVAQLKEIREKAKKFTFQTEVNRMMKLIINSLYRNKEIFL
RELISNASDAIDKIRLLALSNSKELETNPELHIRIKADKENKALHIMDSG
IGMTHQDLINNLGTIAKSGTADFLAKMQDPSKSEGLDMNDMIGQFGVGFY
SAFLVADRVVVTTKHNDDKQYIWESDANSFSITEDPRGDTLKRGSVISLY
LKEEAQDFLEEDTVRELIRKYSQFINFPIRMWSSKTVEEEVPVEEEAKPE
KSEDDVEDEDAKVEEAEDEKPKTKKVSKTTWDWTLINDSKPIWTRKPAEV
TEDEYTSFYKSLTKDSSEPLTQTHFIAEGEVTFKSLLYVPKVQPSESFNR
YGTKSDNIKLYVRRVFITDEFNDMMPNYLSFIRGVVDSDDLPLNVSRETL
QQHKLIKVIKKKLVRKVLDMLKKIDKEAYEKFWKEFSTNIKLGVMEDPSN
RSRLAKLLRFQTSNGKGVTSLAEYKERMKAKQEHIYYIAGANRAEVEKSP
FVERLLSKGYEVLYLVEAVDEYCISALPEFDGKKFQNVAKEGFQLNESEK
SKKNFESLKSTFEPLVKWLNDVALKDQISKAQVSERLSNSPCALVAGVFG
WTGNMERLAMSNAHQKSDDPQRTYYLNQKKTLEINPRHPLMRELLRRVEA
DEADDTAKDMAVMMFRTATLRSGYMLQETSQFADSIEQMMRQTLGVSQDE
QVEFDEEEEDDAEETATGSQESGNADDEEEEQQHDELASFLDH

BO10605.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
Gp93-PA 787 CG5520-PA 1..787 1..787 4001 100 Plus
Hsp83-PB 717 CG1242-PB 3..715 70..777 1575 45.3 Plus
Hsp83-PA 717 CG1242-PA 3..715 70..777 1575 45.3 Plus
Trap1-PB 691 CG3152-PB 65..668 74..723 802 30.7 Plus
Trap1-PA 691 CG3152-PA 65..668 74..723 802 30.7 Plus