Clone BO10606 Report

Search the DGRC for BO10606

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:106
Well:6
Vector:pDNR-Dual
Associated Gene/Transcripthkl-RA
Protein status:BO10606.pep: Inserted from web
Sequenced Size:2292

Clone Sequence Records

BO10606.3prime Sequence

942 bp (802 high quality bases) assembled on 2006-04-19

> BO10606.3prime
ATGGTCTAGAAAGCTTGCGTAACGTCTTCGCTCCCGCTCGCGACTGCGAG
ATCGTCGCCGTTCGTTGGAACGATTGCGACGCGTCTCGCGCTGGCGGTCA
CGATCCTTCTCCCGCTCTTTCTGGCGCTCCTCCCGTTCCTTAATACGCAG
CTTGTGCTCCTCAATGCGTTTCTGACGGAATGCCTCCTTTTCTGCGATCG
CTTCCGGCGTAAGTGGCAGCCAGTATATGCAAGGTGTTCCCTTGGTTTTT
CGAAATAGATCATCTAGTAGTCTGATAGGCGGTTCATTCTCCTTCTTAGT
TTTGGACGCTGGCGATCCACTGCGGCTCCTTGCATGTGCATTGCGATCAA
GTCGCTCCCGCTCCCGATCGCGTCCTCGCCCCTCTCTGTCCCTAGAACGC
TTTCGTTCCTGTCCGGCTCGCTCCGCATCCCTAGACCTCGAGTCCAGTCG
ATCCTTGCTGTCCCGACGCCTGTCGTTGCTGTGTTTGTCGTGGTCGCTTG
GTTCCTTTTTGCCAACATCCCATTCGCGTACAGGTCGCGCAGGTTTTTTG
TCAGACGGTTCCAACCGGGACCAAGCGTTGCCCGACTGCTGGTTATCTCT
GGTGTTTTCCTGCCCGTACCTCGGAGCCTCGTCCTTCGTTGAAAGTATTG
CCCGATCCATATCAGTGCGACTGCCAAAATCTACATTCAAACATTTGGGA
TTTGACACTGGCCAGCGAACTCCGTGCAGGGCATGTCGGGTTTCGATGGC
CTCGTCTTCAGTGGAATAGGCAACATAGCACTTAGACTTGATCCGATCTA
TCCAGAAACCATCTTCCTCAACGATCTTTCCCGTCCGCGCCAGCAGGCCT
TTCAGCTGCAGCACTGTGAAGGGGCGTACCAAATTGGTGATATAGAGCAC
GTGGCTGGCGCGGTTTCGAGCAGGACTAGGGTCACGGACTAT

BO10606.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10473-PB 2220 CG10473-RB 1294..2217 942..19 4620 100 Minus
CG10473-PA 2220 CG10473-RA 1294..2217 942..19 4620 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
Acn-RC 3153 CG10473-RC 1506..2429 942..19 4620 100 Minus
Acn-RB 2513 CG10473-RB 1506..2429 942..19 4620 100 Minus
Acn-RA 2884 CG10473-RA 1421..2344 942..19 4620 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19047420..19047654 543..309 1175 100 Minus
2L 23513712 2L 19047152..19047362 754..544 1055 100 Minus
2L 23513712 2L 19046860..19047047 942..755 940 100 Minus
2L 23513712 2L 19047913..19048093 199..19 905 100 Minus
2L 23513712 2L 19047714..19047825 310..199 560 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:14:45 has no hits.

BO10606.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:43:48 Download gff for BO10606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10473-PA 1294..2220 18..942 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:59:00 Download gff for BO10606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10473-PA 1294..2220 18..942 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:27:38 Download gff for BO10606.3prime
Subject Subject Range Query Range Percent Splice Strand
Acn-RA 1421..2349 13..942 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:45:39 Download gff for BO10606.3prime
Subject Subject Range Query Range Percent Splice Strand
Acn-RA 1421..2349 13..942 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:45:39 Download gff for BO10606.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19047420..19047654 309..543 100 -> Minus
2L 19047716..19047825 199..308 100 -> Minus
2L 19047914..19048098 13..198 98   Minus
2L 19046860..19047047 755..942 100 -> Minus
2L 19047152..19047362 544..754 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:27:38 Download gff for BO10606.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19046860..19047047 755..942 100 -> Minus
arm_2L 19047152..19047362 544..754 100 -> Minus
arm_2L 19047420..19047654 309..543 100 -> Minus
arm_2L 19047716..19047825 199..308 100 -> Minus
arm_2L 19047914..19048098 13..198 98   Minus

BO10606.5prime Sequence

774 bp (770 high quality bases) assembled on 2006-04-19

> BO10606.5prime
GAAGTTATCAGTCGACATGAGACGTCGCAGCGAGTTTCCAGCGATTTTCG
GACAGCCATGAGACGTCGCAGCGAGCGAAAAAAGTCGTCGTCGCCCGCTC
CGGTGCCGGTGGCAGTTGCACGGAGAAGTCGCCGCTCCCGCAAGGTGTCG
GAGAACGAGAAGACCGAGGTCGAGACTCCGGTCGTGGCCCAAAATAATGA
GGCCGAATGCCCCAAAGTACCGCCAGCCTCTCAAGAAATCAATGAGGCGC
GGGCATCCAGTGAAGAACGTGCCGGATCTGGAGCATCGCCAGTGCGCAGG
AGTCGCGGCAGCCGGACGACGCCTAGAAAGCGCACGGAGTCCAAGGGCGG
CGACAAGAAGGTGGACACCATACCCGAGGAGGAGCCGGAGAATGGAAAGG
ATGTTGAAAAGGACGCTGTCGAGGAGGAAAAGACTGTAGCGCCACCCGCG
GCTAATGAGAGCGAGTCCGAGGACCGTGCCAAGACGGAGGATCAGCAGGC
TCAAGACGATGAATCCTGTGCTGAACCCGCTGTAGTCAAGGATGATGATG
TTGAGAAAGAGGACTTAAAACCGCAGCAGGAGGTCCCCACTTCCACTGAT
GATGACACCAAGCAGAGCGAGCCAGAACAAGAGGTAAAGGTTCCTTCTCC
TTCCAGCAAGGATGAGGAACATCTAAAAACGACTAGTGATGTATTAGACA
TTCAGACAGAAGAGGTCGATGAAAGGGACGAAGAAGCCTCCGCTCCTGCG
GAGCGCAGAGAAACCAAGAAGAGG

BO10606.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10473-PB 2220 CG10473-RB 1..717 58..774 3585 100 Plus
CG10473-PA 2220 CG10473-RA 1..717 58..774 3585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
Acn-RC 3153 CG10473-RC 178..929 23..774 3760 100 Plus
Acn-RB 2513 CG10473-RB 178..929 23..774 3760 100 Plus
Acn-RA 2884 CG10473-RA 93..844 23..774 3760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19045532..19046283 23..774 3760 100 Plus
Blast to na_te.dros performed on 2015-02-04 04:26:29 has no hits.

BO10606.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:43:49 Download gff for BO10606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10473-PA 1..717 58..774 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:59:01 Download gff for BO10606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10473-PA 1..717 58..774 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:01:43 Download gff for BO10606.5prime
Subject Subject Range Query Range Percent Splice Strand
Acn-RA 91..844 20..774 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:36:35 Download gff for BO10606.5prime
Subject Subject Range Query Range Percent Splice Strand
Acn-RA 91..844 20..774 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:36:35 Download gff for BO10606.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19045530..19046283 20..774 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:01:43 Download gff for BO10606.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19045530..19046283 20..774 99   Plus

BO10606.complete Sequence

2292 bp assembled on 2007-11-02

GenBank Submission: KX798466

> BO10606.complete
GAAGTTATCAGTCGACATGAGACGTCGCAGCGAGTTTCCAGCGATTTTCG
GACAGCCATGAGACGTCGCAGCGAGCGAAAAAAGTCGTCGTCGCCCGCTC
CGGTGCCGGTGGCAGTTGCACGGAGAAGTCGCCGCTCCCGCAAGGTGTCG
GAGAACGAGAAGACCGAGGTCGAGACTCCGGTCGTGGCCCAAAATAATGA
GGCCGAATGCCCCAAAGTACCGCCAGCCTCTCAAGAAATCAATGAGGCGC
GGGCATCCAGTGAAGAACGTGCCGGATCTGGAGCATCGCCAGTGCGCAGG
AGTCGCGGCAGCCGGACGACGCCTAGAAAGCGCACGGAGTCCAAGGGCGG
CGACAAGAAGGTGGACACCATACCCGAGGAGGAGCCGGAGAATGGAAAGG
ATGTTGAAAAGGACGCTGTCGAGGAGGAAAAGACTGTAGCGCCACCCGCG
GCTAATGAGAGCGAGTCCGAGGACCGTGCCAAGACGGAGGATCAGCAGGC
TCAAGACGATGAATCCTGTGCTGAACCCGCTGTAGTCAAGGATGATGATG
TTGAGAAAGAGGACTTAAAACCGCAGCAGGAGGTCCCCACTTCCACTGAT
GATGACACCAAGCAGAGCGAGCCAGAACAAGAGGTAAAGGTTCCTTCTCC
TTCCAGCAAGGATGAGGAACATCTAAAAACGACTAGTGATGTATTAGACA
TTCAGACAGAAGAGGTCGATGAAAGGGACGAAGAAGCCTCCGCTCCTGCG
GAGCGCAGAGAAACCAAGAAGAGGCACAAGGAGCAGATAAAGGAACAGCA
ACCCGCAGAGGAGGAGGAACACAAGGAAAACCACAAGCAGATAGACGAAA
ACCCAGAACAAATTCACGATGAACCAGCAGATCTTTCGAACGACAAGCAC
GATCCATGTCTAAACAGCAGCGCAACCAACACAACCGGTGCTCCAGTTCT
GCAGCAACAACGGTCGGTGCGGAAGCGAAAGTGGCTGACTAACAAAAAGT
CTTCGGATCGTACCCCGCCCGTGCTTGCCATTTCGACGGATTCCCTGAAG
AACATTATAGCCGATGTGGTGCAGCCAGTGCCCCTAAGCGATGTGCAACT
GGAATCGTCCTCAGAGGAGGAAGGCCTGGTCACCAGCGATCGCGATTCAG
AGCGATCTGCTTCACCGGCGCCCCCATCTGAAGCAAGCAAAGACCGCGAT
AACAAGGGCAATACCGCCAACACCTGCGACACCACCGCAGAGGCGTCGGC
AGATAATGAAGGAGCAGGAGCCGCTCCTCCAGCAGCAGCAGACACGGTTT
CAGCCCAGGTCAGCCTGAGCAAAGCCACAGTTTCCACGGCAGCACCACAC
ATAGTCCGTGACCCTAGTCCTGCTCGAAACCGCGCCAGCCACGTGCTCTA
TATCACCAATTTGGTACGCCCCTTCACAGTGCTGCAGCTGAAAGGCCTGC
TGGCGCGGACGGGAAAGATCGTTGAGGAAGATGGTTTCTGGATAGATCGG
ATCAAGTCTAAGTGCTATGTTGCCTATTCCACTGAAGACGAGGCCATCGA
AACCCGACATGCCCTGCACGGAGTTCGCTGGCCAGTGTCAAATCCCAAAT
GTTTGAATGTAGATTTTGGCAGTCGCACTGATATGGATCGGGCAATACTT
TCAACGAAGGACGAGGCTCCGAGGTACGGGCAGGAAAACACCAGAGATAA
CCAGCAGTCGGGCAACGCTTGGTCCCGGTTGGAACCGTCTGACAAAAAAC
CTGCGCGACCTGTACGCGAATGGGATGTTGGCAAAAAGGAACCAAGCGAC
CACGACAAACACAGCAACGACAGGCGTCGGGACAGCAAGGATCGACTGGA
CTCGAGGTCTAGGGATGCGGAGCGAGCCGGACAGGAACGAAAGCGTTCTA
GGGACAGAGAGGGGCGAGGACGCGATCGGGAGCGGGAGCGACTTGATCGC
AATGCACATGCAAGGAGCCGCAGTGGATCGCCAGCGTCCAAAACTAAGAA
GGAGAATGAACCGCCTATCAGACTACTAGATGATCTATTTCGAAAAACCA
AGGGAACACCTTGCATATACTGGCTGCCACTTACGCCGGAAGCGATCGCA
GAAAAGGAGGCATTCCGTCAGAAACGCATTGAGGAGCACAAGCTGCGTAT
TAAGGAACGGGAGGAGCGCCAGAAAGAGCGGGAGAAGGATCGTGACCGCC
AGCGCGAGACGCGTCGCAATCGTTCCAACGAACGGCGACGATCTCGCAGT
CGCGAGCGGGAGCGAAGACGTTACGCAAGCTTTCTAGACCAT

BO10606.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
Acn-RC 2220 CG10473-PC 1..2217 58..2274 11085 100 Plus
Acn-RB 2220 CG10473-PB 1..2217 58..2274 11085 100 Plus
Acn-RA 2220 CG10473-PA 1..2217 58..2274 11085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
Acn-RC 3153 CG10473-RC 178..2429 23..2274 11260 100 Plus
Acn-RB 2513 CG10473-RB 178..2429 23..2274 11260 100 Plus
Acn-RA 2884 CG10473-RA 93..2344 23..2274 11260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19045532..19047047 23..1538 7580 100 Plus
2L 23513712 2L 19047420..19047654 1750..1984 1175 100 Plus
2L 23513712 2L 19047152..19047362 1539..1749 1055 100 Plus
2L 23513712 2L 19047913..19048093 2094..2274 905 100 Plus
2L 23513712 2L 19047714..19047825 1983..2094 560 100 Plus
Blast to na_te.dros performed 2014-11-27 19:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1062..1146 1260..1347 135 64.8 Plus

BO10606.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:15 Download gff for BO10606.complete
Subject Subject Range Query Range Percent Splice Strand
hkl-RA 1..2220 58..2275 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:45 Download gff for BO10606.complete
Subject Subject Range Query Range Percent Splice Strand
hkl-RA 70..2328 20..2280 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:37 Download gff for BO10606.complete
Subject Subject Range Query Range Percent Splice Strand
Acn-RA 87..2344 17..2276 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:25 Download gff for BO10606.complete
Subject Subject Range Query Range Percent Splice Strand
hkl-RA 66..2323 17..2276 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:54 Download gff for BO10606.complete
Subject Subject Range Query Range Percent Splice Strand
Acn-RA 87..2344 17..2276 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:54 Download gff for BO10606.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19045526..19047047 17..1538 99 -> Plus
2L 19047152..19047362 1539..1749 100 -> Plus
2L 19047420..19047654 1750..1984 100 -> Plus
2L 19047716..19047825 1985..2094 100 -> Plus
2L 19047914..19048093 2095..2276 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:37 Download gff for BO10606.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19045526..19047047 17..1538 99 -> Plus
arm_2L 19047152..19047362 1539..1749 100 -> Plus
arm_2L 19047420..19047654 1750..1984 100 -> Plus
arm_2L 19047716..19047825 1985..2094 100 -> Plus
arm_2L 19047914..19048093 2095..2276 98   Plus

BO10606.pep Sequence

Translation from 57 to 2292

> BO10606.pep
MRRRSERKKSSSPAPVPVAVARRSRRSRKVSENEKTEVETPVVAQNNEAE
CPKVPPASQEINEARASSEERAGSGASPVRRSRGSRTTPRKRTESKGGDK
KVDTIPEEEPENGKDVEKDAVEEEKTVAPPAANESESEDRAKTEDQQAQD
DESCAEPAVVKDDDVEKEDLKPQQEVPTSTDDDTKQSEPEQEVKVPSPSS
KDEEHLKTTSDVLDIQTEEVDERDEEASAPAERRETKKRHKEQIKEQQPA
EEEEHKENHKQIDENPEQIHDEPADLSNDKHDPCLNSSATNTTGAPVLQQ
QRSVRKRKWLTNKKSSDRTPPVLAISTDSLKNIIADVVQPVPLSDVQLES
SSEEEGLVTSDRDSERSASPAPPSEASKDRDNKGNTANTCDTTAEASADN
EGAGAAPPAAADTVSAQVSLSKATVSTAAPHIVRDPSPARNRASHVLYIT
NLVRPFTVLQLKGLLARTGKIVEEDGFWIDRIKSKCYVAYSTEDEAIETR
HALHGVRWPVSNPKCLNVDFGSRTDMDRAILSTKDEAPRYGQENTRDNQQ
SGNAWSRLEPSDKKPARPVREWDVGKKEPSDHDKHSNDRRRDSKDRLDSR
SRDAERAGQERKRSRDREGRGRDRERERLDRNAHARSRSGSPASKTKKEN
EPPIRLLDDLFRKTKGTPCIYWLPLTPEAIAEKEAFRQKRIEEHKLRIKE
REERQKEREKDRDRQRETRRNRSNERRRSRSRERERRRYASFLDH

BO10606.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
Acn-PC 739 CG10473-PC 1..739 1..739 3806 100 Plus
Acn-PB 739 CG10473-PB 1..739 1..739 3806 100 Plus
Acn-PA 739 CG10473-PA 1..739 1..739 3806 100 Plus
futsch-PF 5495 CG34387-PF 3456..4162 2..740 244 18.4 Plus
futsch-PE 5495 CG34387-PE 3456..4162 2..740 244 18.4 Plus
futsch-PF 5495 CG34387-PF 3070..3831 6..737 184 17.9 Plus
futsch-PF 5495 CG34387-PF 2951..3702 8..731 177 19 Plus