Clone Sequence Records
BO10606.3prime Sequence
942 bp (802 high quality bases) assembled on 2006-04-19
> BO10606.3prime
ATGGTCTAGAAAGCTTGCGTAACGTCTTCGCTCCCGCTCGCGACTGCGAG
ATCGTCGCCGTTCGTTGGAACGATTGCGACGCGTCTCGCGCTGGCGGTCA
CGATCCTTCTCCCGCTCTTTCTGGCGCTCCTCCCGTTCCTTAATACGCAG
CTTGTGCTCCTCAATGCGTTTCTGACGGAATGCCTCCTTTTCTGCGATCG
CTTCCGGCGTAAGTGGCAGCCAGTATATGCAAGGTGTTCCCTTGGTTTTT
CGAAATAGATCATCTAGTAGTCTGATAGGCGGTTCATTCTCCTTCTTAGT
TTTGGACGCTGGCGATCCACTGCGGCTCCTTGCATGTGCATTGCGATCAA
GTCGCTCCCGCTCCCGATCGCGTCCTCGCCCCTCTCTGTCCCTAGAACGC
TTTCGTTCCTGTCCGGCTCGCTCCGCATCCCTAGACCTCGAGTCCAGTCG
ATCCTTGCTGTCCCGACGCCTGTCGTTGCTGTGTTTGTCGTGGTCGCTTG
GTTCCTTTTTGCCAACATCCCATTCGCGTACAGGTCGCGCAGGTTTTTTG
TCAGACGGTTCCAACCGGGACCAAGCGTTGCCCGACTGCTGGTTATCTCT
GGTGTTTTCCTGCCCGTACCTCGGAGCCTCGTCCTTCGTTGAAAGTATTG
CCCGATCCATATCAGTGCGACTGCCAAAATCTACATTCAAACATTTGGGA
TTTGACACTGGCCAGCGAACTCCGTGCAGGGCATGTCGGGTTTCGATGGC
CTCGTCTTCAGTGGAATAGGCAACATAGCACTTAGACTTGATCCGATCTA
TCCAGAAACCATCTTCCTCAACGATCTTTCCCGTCCGCGCCAGCAGGCCT
TTCAGCTGCAGCACTGTGAAGGGGCGTACCAAATTGGTGATATAGAGCAC
GTGGCTGGCGCGGTTTCGAGCAGGACTAGGGTCACGGACTAT
BO10606.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10473-PB | 2220 | CG10473-RB | 1294..2217 | 942..19 | 4620 | 100 | Minus |
CG10473-PA | 2220 | CG10473-RA | 1294..2217 | 942..19 | 4620 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:14:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acn-RC | 3153 | CG10473-RC | 1506..2429 | 942..19 | 4620 | 100 | Minus |
Acn-RB | 2513 | CG10473-RB | 1506..2429 | 942..19 | 4620 | 100 | Minus |
Acn-RA | 2884 | CG10473-RA | 1421..2344 | 942..19 | 4620 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:14:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19047420..19047654 | 543..309 | 1175 | 100 | Minus |
2L | 23513712 | 2L | 19047152..19047362 | 754..544 | 1055 | 100 | Minus |
2L | 23513712 | 2L | 19046860..19047047 | 942..755 | 940 | 100 | Minus |
2L | 23513712 | 2L | 19047913..19048093 | 199..19 | 905 | 100 | Minus |
2L | 23513712 | 2L | 19047714..19047825 | 310..199 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:14:45 has no hits.
BO10606.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:43:48 Download gff for
BO10606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10473-PA | 1294..2220 | 18..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:59:00 Download gff for
BO10606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10473-PA | 1294..2220 | 18..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:27:38 Download gff for
BO10606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acn-RA | 1421..2349 | 13..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:45:39 Download gff for
BO10606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acn-RA | 1421..2349 | 13..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:45:39 Download gff for
BO10606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19047420..19047654 | 309..543 | 100 | -> | Minus |
2L | 19047716..19047825 | 199..308 | 100 | -> | Minus |
2L | 19047914..19048098 | 13..198 | 98 | | Minus |
2L | 19046860..19047047 | 755..942 | 100 | -> | Minus |
2L | 19047152..19047362 | 544..754 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:27:38 Download gff for
BO10606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19046860..19047047 | 755..942 | 100 | -> | Minus |
arm_2L | 19047152..19047362 | 544..754 | 100 | -> | Minus |
arm_2L | 19047420..19047654 | 309..543 | 100 | -> | Minus |
arm_2L | 19047716..19047825 | 199..308 | 100 | -> | Minus |
arm_2L | 19047914..19048098 | 13..198 | 98 | | Minus |
BO10606.5prime Sequence
774 bp (770 high quality bases) assembled on 2006-04-19
> BO10606.5prime
GAAGTTATCAGTCGACATGAGACGTCGCAGCGAGTTTCCAGCGATTTTCG
GACAGCCATGAGACGTCGCAGCGAGCGAAAAAAGTCGTCGTCGCCCGCTC
CGGTGCCGGTGGCAGTTGCACGGAGAAGTCGCCGCTCCCGCAAGGTGTCG
GAGAACGAGAAGACCGAGGTCGAGACTCCGGTCGTGGCCCAAAATAATGA
GGCCGAATGCCCCAAAGTACCGCCAGCCTCTCAAGAAATCAATGAGGCGC
GGGCATCCAGTGAAGAACGTGCCGGATCTGGAGCATCGCCAGTGCGCAGG
AGTCGCGGCAGCCGGACGACGCCTAGAAAGCGCACGGAGTCCAAGGGCGG
CGACAAGAAGGTGGACACCATACCCGAGGAGGAGCCGGAGAATGGAAAGG
ATGTTGAAAAGGACGCTGTCGAGGAGGAAAAGACTGTAGCGCCACCCGCG
GCTAATGAGAGCGAGTCCGAGGACCGTGCCAAGACGGAGGATCAGCAGGC
TCAAGACGATGAATCCTGTGCTGAACCCGCTGTAGTCAAGGATGATGATG
TTGAGAAAGAGGACTTAAAACCGCAGCAGGAGGTCCCCACTTCCACTGAT
GATGACACCAAGCAGAGCGAGCCAGAACAAGAGGTAAAGGTTCCTTCTCC
TTCCAGCAAGGATGAGGAACATCTAAAAACGACTAGTGATGTATTAGACA
TTCAGACAGAAGAGGTCGATGAAAGGGACGAAGAAGCCTCCGCTCCTGCG
GAGCGCAGAGAAACCAAGAAGAGG
BO10606.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10473-PB | 2220 | CG10473-RB | 1..717 | 58..774 | 3585 | 100 | Plus |
CG10473-PA | 2220 | CG10473-RA | 1..717 | 58..774 | 3585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acn-RC | 3153 | CG10473-RC | 178..929 | 23..774 | 3760 | 100 | Plus |
Acn-RB | 2513 | CG10473-RB | 178..929 | 23..774 | 3760 | 100 | Plus |
Acn-RA | 2884 | CG10473-RA | 93..844 | 23..774 | 3760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19045532..19046283 | 23..774 | 3760 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:26:29 has no hits.
BO10606.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:43:49 Download gff for
BO10606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10473-PA | 1..717 | 58..774 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:59:01 Download gff for
BO10606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10473-PA | 1..717 | 58..774 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:01:43 Download gff for
BO10606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acn-RA | 91..844 | 20..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:36:35 Download gff for
BO10606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acn-RA | 91..844 | 20..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:36:35 Download gff for
BO10606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19045530..19046283 | 20..774 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:01:43 Download gff for
BO10606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19045530..19046283 | 20..774 | 99 | | Plus |
BO10606.complete Sequence
2292 bp assembled on 2007-11-02
GenBank Submission: KX798466
> BO10606.complete
GAAGTTATCAGTCGACATGAGACGTCGCAGCGAGTTTCCAGCGATTTTCG
GACAGCCATGAGACGTCGCAGCGAGCGAAAAAAGTCGTCGTCGCCCGCTC
CGGTGCCGGTGGCAGTTGCACGGAGAAGTCGCCGCTCCCGCAAGGTGTCG
GAGAACGAGAAGACCGAGGTCGAGACTCCGGTCGTGGCCCAAAATAATGA
GGCCGAATGCCCCAAAGTACCGCCAGCCTCTCAAGAAATCAATGAGGCGC
GGGCATCCAGTGAAGAACGTGCCGGATCTGGAGCATCGCCAGTGCGCAGG
AGTCGCGGCAGCCGGACGACGCCTAGAAAGCGCACGGAGTCCAAGGGCGG
CGACAAGAAGGTGGACACCATACCCGAGGAGGAGCCGGAGAATGGAAAGG
ATGTTGAAAAGGACGCTGTCGAGGAGGAAAAGACTGTAGCGCCACCCGCG
GCTAATGAGAGCGAGTCCGAGGACCGTGCCAAGACGGAGGATCAGCAGGC
TCAAGACGATGAATCCTGTGCTGAACCCGCTGTAGTCAAGGATGATGATG
TTGAGAAAGAGGACTTAAAACCGCAGCAGGAGGTCCCCACTTCCACTGAT
GATGACACCAAGCAGAGCGAGCCAGAACAAGAGGTAAAGGTTCCTTCTCC
TTCCAGCAAGGATGAGGAACATCTAAAAACGACTAGTGATGTATTAGACA
TTCAGACAGAAGAGGTCGATGAAAGGGACGAAGAAGCCTCCGCTCCTGCG
GAGCGCAGAGAAACCAAGAAGAGGCACAAGGAGCAGATAAAGGAACAGCA
ACCCGCAGAGGAGGAGGAACACAAGGAAAACCACAAGCAGATAGACGAAA
ACCCAGAACAAATTCACGATGAACCAGCAGATCTTTCGAACGACAAGCAC
GATCCATGTCTAAACAGCAGCGCAACCAACACAACCGGTGCTCCAGTTCT
GCAGCAACAACGGTCGGTGCGGAAGCGAAAGTGGCTGACTAACAAAAAGT
CTTCGGATCGTACCCCGCCCGTGCTTGCCATTTCGACGGATTCCCTGAAG
AACATTATAGCCGATGTGGTGCAGCCAGTGCCCCTAAGCGATGTGCAACT
GGAATCGTCCTCAGAGGAGGAAGGCCTGGTCACCAGCGATCGCGATTCAG
AGCGATCTGCTTCACCGGCGCCCCCATCTGAAGCAAGCAAAGACCGCGAT
AACAAGGGCAATACCGCCAACACCTGCGACACCACCGCAGAGGCGTCGGC
AGATAATGAAGGAGCAGGAGCCGCTCCTCCAGCAGCAGCAGACACGGTTT
CAGCCCAGGTCAGCCTGAGCAAAGCCACAGTTTCCACGGCAGCACCACAC
ATAGTCCGTGACCCTAGTCCTGCTCGAAACCGCGCCAGCCACGTGCTCTA
TATCACCAATTTGGTACGCCCCTTCACAGTGCTGCAGCTGAAAGGCCTGC
TGGCGCGGACGGGAAAGATCGTTGAGGAAGATGGTTTCTGGATAGATCGG
ATCAAGTCTAAGTGCTATGTTGCCTATTCCACTGAAGACGAGGCCATCGA
AACCCGACATGCCCTGCACGGAGTTCGCTGGCCAGTGTCAAATCCCAAAT
GTTTGAATGTAGATTTTGGCAGTCGCACTGATATGGATCGGGCAATACTT
TCAACGAAGGACGAGGCTCCGAGGTACGGGCAGGAAAACACCAGAGATAA
CCAGCAGTCGGGCAACGCTTGGTCCCGGTTGGAACCGTCTGACAAAAAAC
CTGCGCGACCTGTACGCGAATGGGATGTTGGCAAAAAGGAACCAAGCGAC
CACGACAAACACAGCAACGACAGGCGTCGGGACAGCAAGGATCGACTGGA
CTCGAGGTCTAGGGATGCGGAGCGAGCCGGACAGGAACGAAAGCGTTCTA
GGGACAGAGAGGGGCGAGGACGCGATCGGGAGCGGGAGCGACTTGATCGC
AATGCACATGCAAGGAGCCGCAGTGGATCGCCAGCGTCCAAAACTAAGAA
GGAGAATGAACCGCCTATCAGACTACTAGATGATCTATTTCGAAAAACCA
AGGGAACACCTTGCATATACTGGCTGCCACTTACGCCGGAAGCGATCGCA
GAAAAGGAGGCATTCCGTCAGAAACGCATTGAGGAGCACAAGCTGCGTAT
TAAGGAACGGGAGGAGCGCCAGAAAGAGCGGGAGAAGGATCGTGACCGCC
AGCGCGAGACGCGTCGCAATCGTTCCAACGAACGGCGACGATCTCGCAGT
CGCGAGCGGGAGCGAAGACGTTACGCAAGCTTTCTAGACCAT
BO10606.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:58:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acn-RC | 2220 | CG10473-PC | 1..2217 | 58..2274 | 11085 | 100 | Plus |
Acn-RB | 2220 | CG10473-PB | 1..2217 | 58..2274 | 11085 | 100 | Plus |
Acn-RA | 2220 | CG10473-PA | 1..2217 | 58..2274 | 11085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:58:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acn-RC | 3153 | CG10473-RC | 178..2429 | 23..2274 | 11260 | 100 | Plus |
Acn-RB | 2513 | CG10473-RB | 178..2429 | 23..2274 | 11260 | 100 | Plus |
Acn-RA | 2884 | CG10473-RA | 93..2344 | 23..2274 | 11260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:58:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19045532..19047047 | 23..1538 | 7580 | 100 | Plus |
2L | 23513712 | 2L | 19047420..19047654 | 1750..1984 | 1175 | 100 | Plus |
2L | 23513712 | 2L | 19047152..19047362 | 1539..1749 | 1055 | 100 | Plus |
2L | 23513712 | 2L | 19047913..19048093 | 2094..2274 | 905 | 100 | Plus |
2L | 23513712 | 2L | 19047714..19047825 | 1983..2094 | 560 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 19:58:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1062..1146 | 1260..1347 | 135 | 64.8 | Plus |
BO10606.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:15 Download gff for
BO10606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hkl-RA | 1..2220 | 58..2275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:45 Download gff for
BO10606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hkl-RA | 70..2328 | 20..2280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:37 Download gff for
BO10606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acn-RA | 87..2344 | 17..2276 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:25 Download gff for
BO10606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hkl-RA | 66..2323 | 17..2276 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:54 Download gff for
BO10606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acn-RA | 87..2344 | 17..2276 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:54 Download gff for
BO10606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19045526..19047047 | 17..1538 | 99 | -> | Plus |
2L | 19047152..19047362 | 1539..1749 | 100 | -> | Plus |
2L | 19047420..19047654 | 1750..1984 | 100 | -> | Plus |
2L | 19047716..19047825 | 1985..2094 | 100 | -> | Plus |
2L | 19047914..19048093 | 2095..2276 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:37 Download gff for
BO10606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19045526..19047047 | 17..1538 | 99 | -> | Plus |
arm_2L | 19047152..19047362 | 1539..1749 | 100 | -> | Plus |
arm_2L | 19047420..19047654 | 1750..1984 | 100 | -> | Plus |
arm_2L | 19047716..19047825 | 1985..2094 | 100 | -> | Plus |
arm_2L | 19047914..19048093 | 2095..2276 | 98 | | Plus |
BO10606.pep Sequence
Translation from 57 to 2292
> BO10606.pep
MRRRSERKKSSSPAPVPVAVARRSRRSRKVSENEKTEVETPVVAQNNEAE
CPKVPPASQEINEARASSEERAGSGASPVRRSRGSRTTPRKRTESKGGDK
KVDTIPEEEPENGKDVEKDAVEEEKTVAPPAANESESEDRAKTEDQQAQD
DESCAEPAVVKDDDVEKEDLKPQQEVPTSTDDDTKQSEPEQEVKVPSPSS
KDEEHLKTTSDVLDIQTEEVDERDEEASAPAERRETKKRHKEQIKEQQPA
EEEEHKENHKQIDENPEQIHDEPADLSNDKHDPCLNSSATNTTGAPVLQQ
QRSVRKRKWLTNKKSSDRTPPVLAISTDSLKNIIADVVQPVPLSDVQLES
SSEEEGLVTSDRDSERSASPAPPSEASKDRDNKGNTANTCDTTAEASADN
EGAGAAPPAAADTVSAQVSLSKATVSTAAPHIVRDPSPARNRASHVLYIT
NLVRPFTVLQLKGLLARTGKIVEEDGFWIDRIKSKCYVAYSTEDEAIETR
HALHGVRWPVSNPKCLNVDFGSRTDMDRAILSTKDEAPRYGQENTRDNQQ
SGNAWSRLEPSDKKPARPVREWDVGKKEPSDHDKHSNDRRRDSKDRLDSR
SRDAERAGQERKRSRDREGRGRDRERERLDRNAHARSRSGSPASKTKKEN
EPPIRLLDDLFRKTKGTPCIYWLPLTPEAIAEKEAFRQKRIEEHKLRIKE
REERQKEREKDRDRQRETRRNRSNERRRSRSRERERRRYASFLDH
BO10606.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acn-PC | 739 | CG10473-PC | 1..739 | 1..739 | 3806 | 100 | Plus |
Acn-PB | 739 | CG10473-PB | 1..739 | 1..739 | 3806 | 100 | Plus |
Acn-PA | 739 | CG10473-PA | 1..739 | 1..739 | 3806 | 100 | Plus |
futsch-PF | 5495 | CG34387-PF | 3456..4162 | 2..740 | 244 | 18.4 | Plus |
futsch-PE | 5495 | CG34387-PE | 3456..4162 | 2..740 | 244 | 18.4 | Plus |
futsch-PF | 5495 | CG34387-PF | 3070..3831 | 6..737 | 184 | 17.9 | Plus |
futsch-PF | 5495 | CG34387-PF | 2951..3702 | 8..731 | 177 | 19 | Plus |