Clone BO10609 Report

Search the DGRC for BO10609

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:106
Well:9
Vector:pDNR-Dual
Associated Gene/Transcripteca-RA
Protein status:BO10609.pep: validated full length
Sequenced Size:682

Clone Sequence Records

BO10609.3prime Sequence

680 bp (679 high quality bases) assembled on 2006-04-19

> BO10609.3prime
ATGGTCTAGAAAGCTTGCCACCAGTTTCTTGGCCTCAAAGAAGCTCTTGA
GATGACGCATCTGCCAGAAGCCCATGCAAACCAAGACGACGGTCTGGGCC
AGCGACCACCAGAGCACGCGGGAGTTGGTGCTCTCGCTGGTGTGACGGAA
CCGCTCCTCGCGGTATCGCTGGTAGTTCTGCTCCTTGGTGATCTGCTCCA
CCTGGTCAAGTAGCTGGCGGATGCGCAGCTGCAGCTCAGTCAGTTTCTCC
TTCTGCGCCACATGGGCGTAGTCGATAGCGTGCTCTCCCACCTGGATGTC
CAGGTGAACACGCAGCTGGGCACCACTGAACCACGCGGTGCTGTTCGAGA
ACATGCAGATGACGTGCTCGCCAGGAGTGTGCGAGGTGAACGAGATGCGG
CCCTGTGAGCTGTACACGCGGGACAGCACAATCTTGTCGTCGCTGTCGCG
TACTTCCACATGCATGCCGATTCCGGGCGACGAGGGCATGAATCCATTAG
AGCGCGGATCATACAGCTCTACCTTGTAGTTAACAATCACAGTTGTCTCG
TCGGGAACCTCCTCGATGAAGCACTTGCGCTCCGTCTCCGATATGTGGAA
GTACAAGCCGCAGGCGCTGTGCAGGACGCACAGAATCAGGGCCAGGCTGA
TGAATTGGTCGCGCATGTCGACTGATAACT

BO10609.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG33104-PA 651 eca-RA 1..648 666..19 3240 100 Minus
CG33105-PA 735 CG33105-RA 1..605 666..62 3000 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
eca-RA 946 CG33104-RA 98..745 666..19 3240 100 Minus
Unc-115b-RE 3535 CG31332-RE 77..681 666..62 3010 99.8 Minus
p24-2-RB 3535 CG33105-RB 77..681 666..62 3010 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9684670..9685185 19..534 2580 100 Plus
3R 32079331 3R 9692033..9692505 62..534 2365 100 Plus
3R 32079331 3R 9685247..9685379 534..666 665 100 Plus
3R 32079331 3R 9692567..9692699 534..666 650 99.2 Plus
Blast to na_te.dros performed on 2015-02-12 00:20:33 has no hits.

BO10609.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:43:55 Download gff for BO10609.3prime
Subject Subject Range Query Range Percent Splice Strand
eca-PA 1..651 16..666 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:59:08 Download gff for BO10609.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33104-PA 1..651 16..666 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:51:38 Download gff for BO10609.3prime
Subject Subject Range Query Range Percent Splice Strand
eca-RA 88..745 19..676 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:03:20 Download gff for BO10609.3prime
Subject Subject Range Query Range Percent Splice Strand
eca-RA 88..745 19..676 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:03:20 Download gff for BO10609.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9684670..9685184 19..533 100 <- Plus
3R 9685247..9685389 534..676 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:51:38 Download gff for BO10609.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5510392..5510906 19..533 100 <- Plus
arm_3R 5510969..5511111 534..676 97   Plus

BO10609.5prime Sequence

680 bp (679 high quality bases) assembled on 2006-04-19

> BO10609.5prime
GAAGTTATCAGTCGACATGCGCGACCAATTCATCAGCCTGGCCCTGATTC
TGTGCGTCCTGCACAGCGCCTGCGGCTTGTACTTCCACATATCGGAGACG
GAGCGCAAGTGCTTCATCGAGGAGGTTCCCGACGAGACAACTGTGATTGT
TAACTACAAGGTAGAGCTGTATGATCCGCGCTCTAATGGATTCATGCCCT
CGTCGCCCGGAATCGGCATGCATGTGGAAGTACGCGACAGCGACGACAAG
ATTGTGCTGTCCCGCGTGTACAGCTCACAGGGCCGCATCTCGTTCACCTC
GCACACTCCTGGCGAGCACGTCATCTGCATGTTCTCGAACAGCACCGCGT
GGTTCAGTGGTGCCCAGCTGCGTGTTCACCTGGACATCCAGGTGGGAGAG
CACGCTATCGACTACGCCCATGTGGCGCAGAAGGAGAAACTGACTGAGCT
GCAGCTGCGCATCCGCCAGCTACTTGACCAGGTGGAGCAGATCACCAAGG
AGCAGAACTACCAGCGATACCGCGAGGAGCGGTTCCGTCACACCAGCGAG
AGCACCAACTCCCGCGTGCTCTGGTGGTCGCTGGCCCAGACCGTCGTCTT
GGTTTGCATGGGCTTCTGGCAGATGCGTCATCTCAAGAGCTTCTTTGAGG
CCAAGAAACTGGTGGCAAGCTTTCTAGACC

BO10609.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG33104-PA 651 eca-RA 1..648 17..664 3240 100 Plus
CG33105-PA 735 CG33105-RA 1..605 17..621 3000 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
eca-RA 946 CG33104-RA 98..745 17..664 3240 100 Plus
Unc-115b-RE 3535 CG31332-RE 77..681 17..621 3010 99.8 Plus
p24-2-RB 3535 CG33105-RB 77..681 17..621 3010 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9684670..9685185 664..149 2580 100 Minus
3R 32079331 3R 9692033..9692505 621..149 2365 100 Minus
3R 32079331 3R 9685247..9685379 149..17 665 100 Minus
3R 32079331 3R 9692567..9692699 149..17 650 99.2 Minus
Blast to na_te.dros performed on 2015-02-10 04:21:41 has no hits.

BO10609.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:43:56 Download gff for BO10609.5prime
Subject Subject Range Query Range Percent Splice Strand
eca-PA 1..651 17..667 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:59:10 Download gff for BO10609.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33104-PA 1..651 17..667 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:44:12 Download gff for BO10609.5prime
Subject Subject Range Query Range Percent Splice Strand
eca-RA 88..745 7..664 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:21:54 Download gff for BO10609.5prime
Subject Subject Range Query Range Percent Splice Strand
eca-RA 88..745 7..664 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:21:54 Download gff for BO10609.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9684670..9685184 150..664 100 <- Minus
3R 9685247..9685389 7..149 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:44:12 Download gff for BO10609.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5510392..5510906 150..664 100 <- Minus
arm_3R 5510969..5511111 7..149 97   Minus

BO10609.complete Sequence

682 bp (682 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631813

> BO10609.complete
GAAGTTATCAGTCGACATGCGCGACCAATTCATCAGCCTGGCCCTGATTC
TGTGCGTCCTGCACAGCGCCTGCGGCTTGTACTTCCACATATCGGAGACG
GAGCGCAAGTGCTTCATCGAGGAGGTTCCCGACGAGACAACTGTGATTGT
TAACTACAAGGTAGAGCTGTATGATCCGCGCTCTAATGGATTCATGCCCT
CGTCGCCCGGAATCGGCATGCATGTGGAAGTACGCGACAGCGACGACAAG
ATTGTGCTGTCCCGCGTGTACAGCTCACAGGGCCGCATCTCGTTCACCTC
GCACACTCCTGGCGAGCACGTCATCTGCATGTTCTCGAACAGCACCGCGT
GGTTCAGTGGTGCCCAGCTGCGTGTTCACCTGGACATCCAGGTGGGAGAG
CACGCTATCGACTACGCCCATGTGGCGCAGAAGGAGAAACTGACTGAGCT
GCAGCTGCGCATCCGCCAGCTACTTGACCAGGTGGAGCAGATCACCAAGG
AGCAGAACTACCAGCGATACCGCGAGGAGCGGTTCCGTCACACCAGCGAG
AGCACCAACTCCCGCGTGCTCTGGTGGTCGCTGGCCCAGACCGTCGTCTT
GGTTTGCATGGGCTTCTGGCAGATGCGTCATCTCAAGAGCTTCTTTGAGG
CCAAGAAACTGGTGGCAAGCTTTCTAGACCAT

BO10609.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
eca-RA 651 CG33104-PA 1..648 17..664 3240 100 Plus
p24-2-RB 735 CG33105-PB 1..605 17..621 3010 99.8 Plus
p24-2-RA 735 CG33105-PA 1..605 17..621 3010 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
eca-RA 946 CG33104-RA 98..745 17..664 3240 100 Plus
Unc-115b-RE 3535 CG31332-RE 77..681 17..621 3010 99.8 Plus
p24-2-RB 3535 CG33105-RB 77..681 17..621 3010 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9684670..9685185 664..149 2580 100 Minus
3R 32079331 3R 9692033..9692505 621..149 2365 100 Minus
3R 32079331 3R 9685247..9685379 149..17 665 100 Minus
3R 32079331 3R 9692567..9692699 149..17 650 99.2 Minus
Blast to na_te.dros performed on 2014-11-27 23:42:34 has no hits.

BO10609.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:13 Download gff for BO10609.complete
Subject Subject Range Query Range Percent Splice Strand
eca-RA 1..651 17..667 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:39 Download gff for BO10609.complete
Subject Subject Range Query Range Percent Splice Strand
eca-RA 143..800 7..664 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:59 Download gff for BO10609.complete
Subject Subject Range Query Range Percent Splice Strand
eca-RA 98..745 17..666 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:13 Download gff for BO10609.complete
Subject Subject Range Query Range Percent Splice Strand
eca-RA 143..800 7..664 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:39 Download gff for BO10609.complete
Subject Subject Range Query Range Percent Splice Strand
eca-RA 98..745 17..666 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:39 Download gff for BO10609.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9684667..9685184 150..666 99 <- Minus
3R 9685247..9685379 17..149 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:59 Download gff for BO10609.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5510389..5510906 150..666 99 <- Minus
arm_3R 5510969..5511101 17..149 100   Minus

BO10609.pep Sequence

Translation from 16 to 682

> BO10609.pep
MRDQFISLALILCVLHSACGLYFHISETERKCFIEEVPDETTVIVNYKVE
LYDPRSNGFMPSSPGIGMHVEVRDSDDKIVLSRVYSSQGRISFTSHTPGE
HVICMFSNSTAWFSGAQLRVHLDIQVGEHAIDYAHVAQKEKLTELQLRIR
QLLDQVEQITKEQNYQRYREERFRHTSESTNSRVLWWSLAQTVVLVCMGF
WQMRHLKSFFEAKKLVASFLDH

BO10609.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
eca-PA 216 CG33104-PA 1..216 1..216 1132 100 Plus
p24-2-PB 244 CG33105-PB 1..206 1..206 1058 97.6 Plus
p24-2-PA 244 CG33105-PA 1..206 1..206 1058 97.6 Plus
bai-PA 206 CG11785-PA 3..205 2..216 218 27.9 Plus
CHOp24-PB 208 CG3564-PB 16..208 10..216 181 25.6 Plus