Clone Sequence Records
BO10609.3prime Sequence
680 bp (679 high quality bases) assembled on 2006-04-19
> BO10609.3prime
ATGGTCTAGAAAGCTTGCCACCAGTTTCTTGGCCTCAAAGAAGCTCTTGA
GATGACGCATCTGCCAGAAGCCCATGCAAACCAAGACGACGGTCTGGGCC
AGCGACCACCAGAGCACGCGGGAGTTGGTGCTCTCGCTGGTGTGACGGAA
CCGCTCCTCGCGGTATCGCTGGTAGTTCTGCTCCTTGGTGATCTGCTCCA
CCTGGTCAAGTAGCTGGCGGATGCGCAGCTGCAGCTCAGTCAGTTTCTCC
TTCTGCGCCACATGGGCGTAGTCGATAGCGTGCTCTCCCACCTGGATGTC
CAGGTGAACACGCAGCTGGGCACCACTGAACCACGCGGTGCTGTTCGAGA
ACATGCAGATGACGTGCTCGCCAGGAGTGTGCGAGGTGAACGAGATGCGG
CCCTGTGAGCTGTACACGCGGGACAGCACAATCTTGTCGTCGCTGTCGCG
TACTTCCACATGCATGCCGATTCCGGGCGACGAGGGCATGAATCCATTAG
AGCGCGGATCATACAGCTCTACCTTGTAGTTAACAATCACAGTTGTCTCG
TCGGGAACCTCCTCGATGAAGCACTTGCGCTCCGTCTCCGATATGTGGAA
GTACAAGCCGCAGGCGCTGTGCAGGACGCACAGAATCAGGGCCAGGCTGA
TGAATTGGTCGCGCATGTCGACTGATAACT
BO10609.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33104-PA | 651 | eca-RA | 1..648 | 666..19 | 3240 | 100 | Minus |
CG33105-PA | 735 | CG33105-RA | 1..605 | 666..62 | 3000 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:20:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eca-RA | 946 | CG33104-RA | 98..745 | 666..19 | 3240 | 100 | Minus |
Unc-115b-RE | 3535 | CG31332-RE | 77..681 | 666..62 | 3010 | 99.8 | Minus |
p24-2-RB | 3535 | CG33105-RB | 77..681 | 666..62 | 3010 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:20:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9684670..9685185 | 19..534 | 2580 | 100 | Plus |
3R | 32079331 | 3R | 9692033..9692505 | 62..534 | 2365 | 100 | Plus |
3R | 32079331 | 3R | 9685247..9685379 | 534..666 | 665 | 100 | Plus |
3R | 32079331 | 3R | 9692567..9692699 | 534..666 | 650 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:20:33 has no hits.
BO10609.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:43:55 Download gff for
BO10609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eca-PA | 1..651 | 16..666 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:59:08 Download gff for
BO10609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33104-PA | 1..651 | 16..666 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:51:38 Download gff for
BO10609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eca-RA | 88..745 | 19..676 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:03:20 Download gff for
BO10609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eca-RA | 88..745 | 19..676 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:03:20 Download gff for
BO10609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9684670..9685184 | 19..533 | 100 | <- | Plus |
3R | 9685247..9685389 | 534..676 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:51:38 Download gff for
BO10609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5510392..5510906 | 19..533 | 100 | <- | Plus |
arm_3R | 5510969..5511111 | 534..676 | 97 | | Plus |
BO10609.5prime Sequence
680 bp (679 high quality bases) assembled on 2006-04-19
> BO10609.5prime
GAAGTTATCAGTCGACATGCGCGACCAATTCATCAGCCTGGCCCTGATTC
TGTGCGTCCTGCACAGCGCCTGCGGCTTGTACTTCCACATATCGGAGACG
GAGCGCAAGTGCTTCATCGAGGAGGTTCCCGACGAGACAACTGTGATTGT
TAACTACAAGGTAGAGCTGTATGATCCGCGCTCTAATGGATTCATGCCCT
CGTCGCCCGGAATCGGCATGCATGTGGAAGTACGCGACAGCGACGACAAG
ATTGTGCTGTCCCGCGTGTACAGCTCACAGGGCCGCATCTCGTTCACCTC
GCACACTCCTGGCGAGCACGTCATCTGCATGTTCTCGAACAGCACCGCGT
GGTTCAGTGGTGCCCAGCTGCGTGTTCACCTGGACATCCAGGTGGGAGAG
CACGCTATCGACTACGCCCATGTGGCGCAGAAGGAGAAACTGACTGAGCT
GCAGCTGCGCATCCGCCAGCTACTTGACCAGGTGGAGCAGATCACCAAGG
AGCAGAACTACCAGCGATACCGCGAGGAGCGGTTCCGTCACACCAGCGAG
AGCACCAACTCCCGCGTGCTCTGGTGGTCGCTGGCCCAGACCGTCGTCTT
GGTTTGCATGGGCTTCTGGCAGATGCGTCATCTCAAGAGCTTCTTTGAGG
CCAAGAAACTGGTGGCAAGCTTTCTAGACC
BO10609.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33104-PA | 651 | eca-RA | 1..648 | 17..664 | 3240 | 100 | Plus |
CG33105-PA | 735 | CG33105-RA | 1..605 | 17..621 | 3000 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:21:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eca-RA | 946 | CG33104-RA | 98..745 | 17..664 | 3240 | 100 | Plus |
Unc-115b-RE | 3535 | CG31332-RE | 77..681 | 17..621 | 3010 | 99.8 | Plus |
p24-2-RB | 3535 | CG33105-RB | 77..681 | 17..621 | 3010 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:21:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9684670..9685185 | 664..149 | 2580 | 100 | Minus |
3R | 32079331 | 3R | 9692033..9692505 | 621..149 | 2365 | 100 | Minus |
3R | 32079331 | 3R | 9685247..9685379 | 149..17 | 665 | 100 | Minus |
3R | 32079331 | 3R | 9692567..9692699 | 149..17 | 650 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 04:21:41 has no hits.
BO10609.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:43:56 Download gff for
BO10609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eca-PA | 1..651 | 17..667 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:59:10 Download gff for
BO10609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33104-PA | 1..651 | 17..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:44:12 Download gff for
BO10609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eca-RA | 88..745 | 7..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:21:54 Download gff for
BO10609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eca-RA | 88..745 | 7..664 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:21:54 Download gff for
BO10609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9684670..9685184 | 150..664 | 100 | <- | Minus |
3R | 9685247..9685389 | 7..149 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:44:12 Download gff for
BO10609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5510392..5510906 | 150..664 | 100 | <- | Minus |
arm_3R | 5510969..5511111 | 7..149 | 97 | | Minus |
BO10609.complete Sequence
682 bp (682 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631813
> BO10609.complete
GAAGTTATCAGTCGACATGCGCGACCAATTCATCAGCCTGGCCCTGATTC
TGTGCGTCCTGCACAGCGCCTGCGGCTTGTACTTCCACATATCGGAGACG
GAGCGCAAGTGCTTCATCGAGGAGGTTCCCGACGAGACAACTGTGATTGT
TAACTACAAGGTAGAGCTGTATGATCCGCGCTCTAATGGATTCATGCCCT
CGTCGCCCGGAATCGGCATGCATGTGGAAGTACGCGACAGCGACGACAAG
ATTGTGCTGTCCCGCGTGTACAGCTCACAGGGCCGCATCTCGTTCACCTC
GCACACTCCTGGCGAGCACGTCATCTGCATGTTCTCGAACAGCACCGCGT
GGTTCAGTGGTGCCCAGCTGCGTGTTCACCTGGACATCCAGGTGGGAGAG
CACGCTATCGACTACGCCCATGTGGCGCAGAAGGAGAAACTGACTGAGCT
GCAGCTGCGCATCCGCCAGCTACTTGACCAGGTGGAGCAGATCACCAAGG
AGCAGAACTACCAGCGATACCGCGAGGAGCGGTTCCGTCACACCAGCGAG
AGCACCAACTCCCGCGTGCTCTGGTGGTCGCTGGCCCAGACCGTCGTCTT
GGTTTGCATGGGCTTCTGGCAGATGCGTCATCTCAAGAGCTTCTTTGAGG
CCAAGAAACTGGTGGCAAGCTTTCTAGACCAT
BO10609.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:42:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eca-RA | 651 | CG33104-PA | 1..648 | 17..664 | 3240 | 100 | Plus |
p24-2-RB | 735 | CG33105-PB | 1..605 | 17..621 | 3010 | 99.8 | Plus |
p24-2-RA | 735 | CG33105-PA | 1..605 | 17..621 | 3010 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:42:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eca-RA | 946 | CG33104-RA | 98..745 | 17..664 | 3240 | 100 | Plus |
Unc-115b-RE | 3535 | CG31332-RE | 77..681 | 17..621 | 3010 | 99.8 | Plus |
p24-2-RB | 3535 | CG33105-RB | 77..681 | 17..621 | 3010 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:42:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9684670..9685185 | 664..149 | 2580 | 100 | Minus |
3R | 32079331 | 3R | 9692033..9692505 | 621..149 | 2365 | 100 | Minus |
3R | 32079331 | 3R | 9685247..9685379 | 149..17 | 665 | 100 | Minus |
3R | 32079331 | 3R | 9692567..9692699 | 149..17 | 650 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:42:34 has no hits.
BO10609.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:13 Download gff for
BO10609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eca-RA | 1..651 | 17..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:39 Download gff for
BO10609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eca-RA | 143..800 | 7..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:59 Download gff for
BO10609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eca-RA | 98..745 | 17..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:13 Download gff for
BO10609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eca-RA | 143..800 | 7..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:39 Download gff for
BO10609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eca-RA | 98..745 | 17..666 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:39 Download gff for
BO10609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9684667..9685184 | 150..666 | 99 | <- | Minus |
3R | 9685247..9685379 | 17..149 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:59 Download gff for
BO10609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5510389..5510906 | 150..666 | 99 | <- | Minus |
arm_3R | 5510969..5511101 | 17..149 | 100 | | Minus |
BO10609.pep Sequence
Translation from 16 to 682
> BO10609.pep
MRDQFISLALILCVLHSACGLYFHISETERKCFIEEVPDETTVIVNYKVE
LYDPRSNGFMPSSPGIGMHVEVRDSDDKIVLSRVYSSQGRISFTSHTPGE
HVICMFSNSTAWFSGAQLRVHLDIQVGEHAIDYAHVAQKEKLTELQLRIR
QLLDQVEQITKEQNYQRYREERFRHTSESTNSRVLWWSLAQTVVLVCMGF
WQMRHLKSFFEAKKLVASFLDH
BO10609.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eca-PA | 216 | CG33104-PA | 1..216 | 1..216 | 1132 | 100 | Plus |
p24-2-PB | 244 | CG33105-PB | 1..206 | 1..206 | 1058 | 97.6 | Plus |
p24-2-PA | 244 | CG33105-PA | 1..206 | 1..206 | 1058 | 97.6 | Plus |
bai-PA | 206 | CG11785-PA | 3..205 | 2..216 | 218 | 27.9 | Plus |
CHOp24-PB | 208 | CG3564-PB | 16..208 | 10..216 | 181 | 25.6 | Plus |