Clone Sequence Records
BO10614.3prime Sequence
770 bp (733 high quality bases) assembled on 2006-04-19
> BO10614.3prime
ATGGTCTAGAAAGCTTGCCTGGGCCAGCTCCTTCATGCGGTTGAGAGCGC
TGCCGGCCTTGAACCAGCCGATCTGTAGGTCGTTCAGGGTGTGGTTAAGC
TTGATCCTCTCGACCTTGTCGCCATTCTTGATTTCGGCATCTACGGGCTT
TCCAGGCGCAAGGGATTTCAGGTTGAGCAGGGAGATTTTGCTCGTGGGCT
GGATCTTATCGTAATCAGCGGGATTGGCGAAGGTGAGAGGCAGAAGACCC
TGTTTCTTCAGGTTGGTCTCGTGGATACGGGCGAAGGACTTGACGATAAT
GGCACGACCACCAAGGTGACGGGGCTCCAAAGCGGCATGCTCGCGGGACG
AACCCTCGCCGTAGTTCTCATCGCCGACGGCCACCCACTTGATGCCGTTG
GCCTTGTAGTCGCGGGCTACGTCGGGAACTCCTCCCCAGCTACCGTTGCG
TTGGTTCTTGATGTTGTTCATCTCGTTGTTTTCGTAGTTGGTGGCTCCGA
TAAACATGTTGTTGGAGATGTTGTCCAAATGGCCACGGTACTTCAGCCAG
GGTCCGGCAGCGGAGATGTGGTCAGTGGTGCACTTTCCCTTAACCTTGAT
CAGCACAGTCAGATCGGTCAGATCCTGGCCGTTCCACTTGTCAAAAGGCT
CCAGCAGCTGCAGACGCGTCGACTTGGGGTCGACAGCCACCTTGACATTT
TCGCCGCTGGGTGGGGGAGCAGTGTAGGTGTCCTGGGCGGGATCGAAACC
CTTGGGGGGCAGCTCGTCGC
BO10614.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9244-PB | 2364 | Acon-RB | 1610..2361 | 770..19 | 3710 | 99.7 | Minus |
CG4706-PA | 2352 | CG4706-RA | 2047..2103 | 303..247 | 185 | 92.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:28:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acon-RF | 3102 | CG9244-RF | 1812..2563 | 770..19 | 3730 | 99.7 | Minus |
Acon-RE | 3022 | CG9244-RE | 1731..2482 | 770..19 | 3730 | 99.7 | Minus |
Acon-RD | 2854 | CG9244-RD | 1731..2482 | 770..19 | 3730 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:28:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21171888..21172398 | 715..205 | 2525 | 99.6 | Minus |
2L | 23513712 | 2L | 21172458..21172645 | 206..19 | 940 | 100 | Minus |
3R | 32079331 | 3R | 11138831..11139579 | 770..22 | 745 | 73.3 | Minus |
2L | 23513712 | 2L | 21171767..21171828 | 770..709 | 280 | 96.8 | Minus |
Blast to na_te.dros performed 2015-02-10 17:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6413..6485 | 520..448 | 122 | 63 | Minus |
BO10614.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:44:04 Download gff for
BO10614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acon-PB | 1610..2364 | 15..770 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:59:19 Download gff for
BO10614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9244-PB | 1610..2364 | 15..770 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:21:32 Download gff for
BO10614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acon-RB | 1731..2485 | 15..770 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:03 Download gff for
BO10614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acon-RD | 1731..2485 | 15..770 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:03 Download gff for
BO10614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21171767..21171828 | 709..770 | 96 | -> | Minus |
2L | 21171895..21172398 | 205..708 | 100 | -> | Minus |
2L | 21172460..21172648 | 15..204 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:21:32 Download gff for
BO10614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21171767..21171828 | 709..770 | 96 | -> | Minus |
arm_2L | 21171895..21172398 | 205..708 | 100 | -> | Minus |
arm_2L | 21172460..21172648 | 15..204 | 98 | | Minus |
BO10614.5prime Sequence
817 bp (783 high quality bases) assembled on 2006-04-19
> BO10614.5prime
GAAGTTATCAGTCGACATGGCTGCGAGATTGATGAACGCCCAGGCACAGG
TGTGTCGACTGGGCAAGCATGTTGCGTCCGAAGCCACAGTGGTGCGTCAG
TTCCACGCCTCCTGCTACACCGCCTCCAAAGTGGCTCTGTCCAAGTTCGA
CTCGGACGTCTACCTGCCGTACGAGAAGCTGAACAAGCGCCTGGAAGTGG
TGCGCGGTCGCTTGAACCGCCCACTGACTCTCTCCGAGAAGGTGCTGTAC
TCGCATCTGGACGATCCCGCAAACCAGGACATCGTGCGCGGTACTTCGTA
CCTGCGTCTTCGCCCCGATCGTGTGGCTATGCAGGATGCCACTGCACAGA
TGGCTCTGCTTCAGTTTATCTCCTCCGGACTGAAAAAGGTGGCTGTGCCC
TCCACTGTTCACTGTGATCATTTAATCGAGGCCCAGATTGGTGGACCCAA
GGATTTAGCCCGTGCCAAGGACCTGAACAAGGAAGTGTACGATTTCTTGG
CCAGCACCTGTGCAAAGTACGGATTGGGCTTCTGGAAGCCAGGCAGCGGA
ATCATCCATCAGATCATTCTGGAGAACTACGCTTTCCCCGGCCTGCTGAT
GATTGGTACTGACTCACACACCCCCAACGGTGGTGGCTTGGGTGGCCTGT
GCATTGGCGTTGGTGGTGCTGATGCCGTCGATGTGATGGCCGACATCCCC
TGGGAGCTGAAGTGCCCCAAGGTGATTGGTGTCAATTTGACTGGCAAGAT
CAGCGGCTGGACCTCGCCCAAGGATGTTATCCTGAAGGTTGCCGATATCC
TGACCGTCAAGGGAGGC
BO10614.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9244-PB | 2364 | Acon-RB | 1..801 | 17..817 | 4005 | 100 | Plus |
CG4706-PA | 2352 | CG4706-RA | 595..647 | 638..690 | 165 | 92.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:15:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acon-RF | 3102 | CG9244-RF | 202..1003 | 16..817 | 4010 | 100 | Plus |
Acon-RE | 3022 | CG9244-RE | 121..922 | 16..817 | 4010 | 100 | Plus |
Acon-RD | 2854 | CG9244-RD | 121..922 | 16..817 | 4010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:15:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21170188..21170958 | 47..817 | 3855 | 100 | Plus |
3R | 32079331 | 3R | 11137525..11138024 | 317..816 | 910 | 78.8 | Plus |
Blast to na_te.dros performed 2015-02-12 01:15:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5965..6050 | 126..41 | 114 | 62.1 | Minus |
BO10614.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:44:05 Download gff for
BO10614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acon-PB | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:59:20 Download gff for
BO10614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9244-PB | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:19:50 Download gff for
BO10614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acon-RB | 117..922 | 13..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:20:25 Download gff for
BO10614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acon-RD | 117..922 | 13..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:20:25 Download gff for
BO10614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21168767..21168804 | 13..49 | 97 | -> | Plus |
2L | 21170191..21170958 | 50..817 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:19:50 Download gff for
BO10614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21168767..21168804 | 13..49 | 97 | -> | Plus |
arm_2L | 21170191..21170958 | 50..817 | 100 | | Plus |
BO10614.complete Sequence
2395 bp (2395 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631814
> BO10614.complete
GAAGTTATCAGTCGACATGGCTGCGAGATTGATGAACGCCCAGGCACAGG
TGTGTCGACTGGGCAAGCATGTTGCGTCCGAAGCCACAGTGGTGCGTCAG
TTCCACGCCTCCTGCTACACCGCCTCCAAAGTGGCTCTGTCCAAGTTCGA
CTCGGACGTCTACCTGCCGTACGAGAAGCTGAACAAGCGCCTGGAAGTGG
TGCGCGGTCGCTTGAACCGCCCACTGACTCTCTCCGAGAAGGTGCTGTAC
TCGCATCTGGACGATCCCGCAAACCAGGACATCGTGCGCGGTACTTCGTA
CCTGCGTCTTCGCCCCGATCGTGTGGCTATGCAGGATGCCACTGCACAGA
TGGCTCTGCTTCAGTTTATCTCCTCCGGACTGAAAAAGGTGGCTGTGCCC
TCCACTGTTCACTGTGATCATTTAATCGAGGCCCAGATTGGTGGACCCAA
GGATTTAGCCCGTGCCAAGGACCTGAACAAGGAAGTGTACGATTTCTTGG
CCAGCACCTGTGCAAAGTACGGATTGGGCTTCTGGAAGCCAGGCAGCGGA
ATCATCCATCAGATCATTCTGGAGAACTACGCTTTCCCCGGCCTGCTGAT
GATTGGTACTGACTCACACACCCCCAACGGTGGTGGCTTGGGTGGCCTGT
GCATTGGCGTTGGTGGTGCTGATGCCGTCGATGTGATGGCCGACATCCCC
TGGGAGCTGAAGTGCCCCAAGGTGATTGGTGTCAATTTGACTGGCAAGAT
CAGCGGCTGGACCTCGCCCAAGGATGTTATCCTGAAGGTTGCCGATATCC
TGACCGTCAAGGGAGGCACCGGTGCCATCATTGAGTATCACGGCAAGGGT
GTTGACTCTATCTCTTGTACAGGCATGGCCACCATCTGCAACATGGGTGC
TGAGATCGGAGCTACCACCTCTCTGTTCCCCTTCAACCAGCGCATGGCTG
ATTACCTGAAATCGACAGGCCGTGCTGGCATTGCCTCCGAAGCCCAGAAG
TACCAGGCCAAGATTCTGTCCGCTGACAAGAACTGCGAGTACGATGAGCT
GATTGAAATCAACCTAGACACCCTGGAGCCCCATGTTAACGGACCATTCA
CTCCCGATTTGGGCCATCCCATCAGCAAGCTAGGCGAGAACTCGAAGAAG
AACGGGTACCCTATGGACATCCGTGTAGGTCTTATTGGCTCTTGCACCAA
CTCTTCGTATGAGGACATGGGTCGCTGCGCCAGCATCGCCAAGGATGCCA
TGAGCCATGGCCTCAAGTCGAAGATTCCTTTCAATGTGACTCCCGGATCA
GAGCAGATCCGTGCCACCATCGAGCGCGACGGCATCTCTGAGGTGTTCGA
CAAGTTCGGCGGTACCGTTCTGGCCAACGCTTGCGGTCCCTGCATTGGAC
AGTGGGATCGTAAGGACGTTAAGAAGGGCGACAAGAACACCATTGTCACC
TCCTACAACCGAAACTTTACTGGCAGGAACGACGCTAACCCGGCCACCCA
TTGCTTTGTCACTAGTCCCGAGTTGGTCACCGCTCTGTCCATCGCCGGTC
GTCTGGACTTCAACCCGCTGACCGACGAGCTTACTGGTGCTGATGGCAAG
AAGTTCAAGCTCAAGGCTCCCTTCGGCGACGAGCTGCCCGCCAAGGGTTT
CGATCCCGGCCAGGACACCTACACTGCTCCCCCACCCAGCGGCGAAAATG
TCAAGGTGGCTGTCGACCCCAAGTCGACGCGTCTGCAGCTGCTGGAGCCT
TTTGACAAGTGGAACGGCCAGGATCTGACCGATCTGACTGTGCTGATCAA
GGTTAAGGGAAAGTGCACCACTGACCACATCTCCGCTGCCGGACCCTGGC
TGAAGTACCGTGGCCATTTGGACAACATCTCCAACAACATGTTTATCGGA
GCCACCAACTACGAAAACAACGAGATGAACAACATCAAGAACCAACGCAA
CGGTAGCTGGGGAGGAGTTCCCGACGTAGCCCGCGACTACAAGGCCAACG
GCATCAAGTGGGTGGCCGTCGGCGATGAGAACTACGGCGAGGGTTCGTCC
CGCGAGCATGCCGCTTTGGAGCCCCGTCACCTTGGTGGTCGTGCCATTAT
CGTCAAGTCCTTCGCCCGTATCCACGAGACCAACCTGAAGAAACAGGGTC
TTCTGCCTCTCACCTTCGCCAATCCCGCTGATTACGATAAGATCCAGCCC
ACGAGCAAAATCTCCCTGCTCAACCTGAAATCCCTTGCGCCTGGAAAGCC
CGTAGATGCCGAAATCAAGAATGGCGACAAGGTCGAGAGGATCAAGCTTA
ACCACACCCTGAACGACCTACAGATCGGCTGGTTCAAGGCCGGCAGCGCT
CTCAACCGCATGAAGGAGCTGGCCCAGGCAAGCTTTCTAGACCAT
BO10614.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:13:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acon-RF | 2364 | CG9244-PF | 1..2361 | 17..2377 | 11805 | 100 | Plus |
Acon-RE | 2364 | CG9244-PE | 1..2361 | 17..2377 | 11805 | 100 | Plus |
Acon-RD | 2364 | CG9244-PD | 1..2361 | 17..2377 | 11805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:13:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acon-RF | 3102 | CG9244-RF | 202..2563 | 16..2377 | 11810 | 100 | Plus |
Acon-RE | 3022 | CG9244-RE | 121..2482 | 16..2377 | 11810 | 100 | Plus |
Acon-RD | 2854 | CG9244-RD | 121..2482 | 16..2377 | 11810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:13:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21170188..21171828 | 47..1687 | 8205 | 100 | Plus |
2L | 23513712 | 2L | 21171888..21172398 | 1681..2191 | 2525 | 99.6 | Plus |
3R | 32079331 | 3R | 11138245..11139579 | 1040..2374 | 1560 | 74.5 | Plus |
3R | 32079331 | 3R | 11137525..11138155 | 317..947 | 1055 | 77.8 | Plus |
2L | 23513712 | 2L | 21172458..21172645 | 2190..2377 | 940 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:13:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6413..6485 | 1876..1948 | 122 | 63 | Plus |
BO10614.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:25 Download gff for
BO10614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acon-RB | 1..2364 | 17..2381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:47 Download gff for
BO10614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acon-RD | 152..2520 | 13..2381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:08 Download gff for
BO10614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acon-RB | 122..2482 | 17..2379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:25 Download gff for
BO10614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acon-RB | 412..2780 | 13..2381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:20 Download gff for
BO10614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acon-RD | 122..2482 | 17..2379 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:20 Download gff for
BO10614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21168772..21168804 | 17..49 | 100 | -> | Plus |
2L | 21170191..21171828 | 50..1687 | 100 | -> | Plus |
2L | 21171895..21172398 | 1688..2191 | 100 | -> | Plus |
2L | 21172460..21172645 | 2192..2379 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:08 Download gff for
BO10614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21168772..21168804 | 17..49 | 100 | -> | Plus |
arm_2L | 21170191..21171828 | 50..1687 | 100 | -> | Plus |
arm_2L | 21171895..21172398 | 1688..2191 | 100 | -> | Plus |
arm_2L | 21172460..21172645 | 2192..2379 | 98 | | Plus |
BO10614.pep Sequence
Translation from 16 to 2395
> BO10614.pep
MAARLMNAQAQVCRLGKHVASEATVVRQFHASCYTASKVALSKFDSDVYL
PYEKLNKRLEVVRGRLNRPLTLSEKVLYSHLDDPANQDIVRGTSYLRLRP
DRVAMQDATAQMALLQFISSGLKKVAVPSTVHCDHLIEAQIGGPKDLARA
KDLNKEVYDFLASTCAKYGLGFWKPGSGIIHQIILENYAFPGLLMIGTDS
HTPNGGGLGGLCIGVGGADAVDVMADIPWELKCPKVIGVNLTGKISGWTS
PKDVILKVADILTVKGGTGAIIEYHGKGVDSISCTGMATICNMGAEIGAT
TSLFPFNQRMADYLKSTGRAGIASEAQKYQAKILSADKNCEYDELIEINL
DTLEPHVNGPFTPDLGHPISKLGENSKKNGYPMDIRVGLIGSCTNSSYED
MGRCASIAKDAMSHGLKSKIPFNVTPGSEQIRATIERDGISEVFDKFGGT
VLANACGPCIGQWDRKDVKKGDKNTIVTSYNRNFTGRNDANPATHCFVTS
PELVTALSIAGRLDFNPLTDELTGADGKKFKLKAPFGDELPAKGFDPGQD
TYTAPPPSGENVKVAVDPKSTRLQLLEPFDKWNGQDLTDLTVLIKVKGKC
TTDHISAAGPWLKYRGHLDNISNNMFIGATNYENNEMNNIKNQRNGSWGG
VPDVARDYKANGIKWVAVGDENYGEGSSREHAALEPRHLGGRAIIVKSFA
RIHETNLKKQGLLPLTFANPADYDKIQPTSKISLLNLKSLAPGKPVDAEI
KNGDKVERIKLNHTLNDLQIGWFKAGSALNRMKELAQASFLDH
BO10614.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acon-PF | 787 | CG9244-PF | 1..787 | 1..787 | 4141 | 100 | Plus |
Acon-PE | 787 | CG9244-PE | 1..787 | 1..787 | 4141 | 100 | Plus |
Acon-PD | 787 | CG9244-PD | 1..787 | 1..787 | 4141 | 100 | Plus |
Acon-PB | 787 | CG9244-PB | 1..787 | 1..787 | 4141 | 100 | Plus |
CG4706-PA | 783 | CG4706-PA | 4..776 | 14..786 | 3285 | 79.3 | Plus |