Clone BO10615 Report

Search the DGRC for BO10615

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:106
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG3542-RA
Protein status:BO10615.pep: validated full length
Sequenced Size:2452

Clone Sequence Records

BO10615.3prime Sequence

840 bp (814 high quality bases) assembled on 2006-04-19

> BO10615.3prime
ATGGTCTAGAAAGCTTGCCTCGTCGAGCTGCTCGCTGAGTTGGGCTAGAA
GAGCCGCTCGCTTCGATTCCAGCTCGCCGTCACTTAACGTCAGCTCCTCG
TTTCGCGATCCAGACGACTCGACGGACTGGGCAGGACTAAGGGGCGTGCC
GGATCGATTGTGCCTGTTGTGTCGCTTGTCCTTCTTAGCTCGCTTCTCCT
TCTTCTTTTTCTTTGCGGGTGAGTGCGAGTTTGAGTCGTTCTGAAGTAGA
GCTTGAGTTCCCGGCGATTGAATGCCTGGAACATCCGATTCGCAGGAGGA
ACCTCGCAGTTTGTTCTTGCGCTTCTTTTTCTTCTTCAGCAATTTTTCGC
TCTCGATGCTGCCAATTGAGGTCAGGGAATGCGATCGTGTCTTGGAGCGC
CTTCGCTTGGACTTCTCCACTTCTATATGCTCATTCTCGATGTCTGATCT
CGAGACGGACCGTACTCGTTTTTTGTGCTTCTTGTTTTTCTTAGATTTTC
GTGATCGCGAGTGATGATGGCTGCACGCATCTTCGCTTTCCTTAACAAAG
TCCTCCCAGATCTTCTCCACACCGATTTCTTTTTCATAAAGGGCAAATGC
TTCAAGGTGTTCTACCAGCTTCTTGGCGCTCTCATAGGGTTCGGCCACTG
AGACGTTCGCCTCCAGCCATTCGTTTTTAATTTCATTTTCTAGTTTCCGC
AACCTTCGCACCTCCTCTTTCATCCGTTCCTTTTCAATGGCCTCGGCCTT
TTCCAGCAGGGAGTTGTATGTGAGCTTCACATTTCCCGCGTCCAGGCTGG
CTGACCGCTTATCTTCACACACGACCGTGGCAAAGTCCTC

BO10615.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3542-PA 2421 CG3542-RA 1597..2418 840..19 4110 100 Minus
CG3542-PB 2274 CG3542-RB 1450..2271 840..19 4110 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3542-RA 2906 CG3542-RA 1759..2580 840..19 4110 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3025255..3025622 749..382 1840 100 Minus
2L 23513712 2L 3025832..3026113 300..19 1410 100 Minus
2L 23513712 2L 3025099..3025192 840..747 470 100 Minus
2L 23513712 2L 3025688..3025769 382..301 410 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:50:26 has no hits.

BO10615.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:44:06 Download gff for BO10615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3542-PB 1450..2274 16..840 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:59:21 Download gff for BO10615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3542-PB 1450..2274 16..840 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:53:18 Download gff for BO10615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3542-RA 1759..2589 12..840 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:16 Download gff for BO10615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3542-RA 1759..2589 12..840 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:16 Download gff for BO10615.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3025099..3025191 748..840 100 -> Minus
2L 3025257..3025622 382..747 100 -> Minus
2L 3025689..3025769 301..381 100 -> Minus
2L 3025832..3026122 12..300 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:53:18 Download gff for BO10615.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3025099..3025191 748..840 100 -> Minus
arm_2L 3025257..3025622 382..747 100 -> Minus
arm_2L 3025689..3025769 301..381 100 -> Minus
arm_2L 3025832..3026122 12..300 98   Minus

BO10615.5prime Sequence

815 bp (779 high quality bases) assembled on 2006-04-19

> BO10615.5prime
GAAGTTATCAGTCGACATGAATGTTCCTCCTAGCGTGGGCAATGGAGGAG
CGCCACCGGGAAGGGGCATAGGCTACACGCCGCCCGGTGCAATCGTGCCG
CAGTTTCCACCACCCGGATTTGGGGCCCCACCCCCACCGGAGCTGGCCGC
CGCCTTCGGGGTGATGGCCACCAGCACCGAGTGGACGGAGCACAAGGCGC
CGGACGGACGACCATACTATTACAATCAGAACACGAAGCAAAGCTCGTGG
GAGAAGCCGGAGGCTCTGATGACGCCCGCCGAGCTGCTGCACAACCAGTG
TCCCTGGAAGGAGTATCGCTCGGATACGGGCAAAGTGTACTACCACAACG
TGGCCACCAAGGAGACCTGCTGGGAGCCGCCGCCGGAGTACGTGGATATG
AAGGCCAAGGCGAAGGCGGAAGAAGCTGCTGCAGCCGCCAAAGCCGTAGC
AGCCATGACATCATCCAGCTTAGCCGGCATGGTGCCACCTGCTGCTCTGG
CTAGTATTCTTCCCGCTGCCCTGCCTGTTGCCCCCCGATTACCGACTCCT
GAGATCCACTCGCCGCTGACACCCAGCAGCAACGAGAACTCGTCATCAGC
GATGGATCAGGCCATGGCCGCCACGTTAGCGGCTATAGAGGTGCCACAAC
AAAATGCTAAGAAGGACGACAAGTCAGAGAGCGCTGTGGTGTTTAAGGAT
AAACGCGAGGCCATCGAGTCCTTTAAAGAGCTGCTGCGGGACCGCAATGT
GCCATCAAATGCGAACTGGGACCAGTGTGTGAAAATCATATCAAAGGATC
CGCGATACGCAGCCT

BO10615.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3542-PA 2421 CG3542-RA 1..799 17..815 3995 100 Plus
CG3542-PB 2274 CG3542-RB 1..652 164..815 3260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3542-RA 2906 CG3542-RA 163..961 17..815 3995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3023388..3023794 17..423 2035 100 Plus
2L 23513712 2L 3023854..3024090 424..660 1170 99.6 Plus
2L 23513712 2L 3024142..3024301 656..815 800 100 Plus
Blast to na_te.dros performed 2015-02-10 21:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 1268..1298 611..641 110 83.9 Plus
TART-C 11124 TART-C TARTC 11124bp 2721..2751 611..641 110 83.9 Plus

BO10615.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:44:07 Download gff for BO10615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3542-PA 1..799 17..815 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:59:23 Download gff for BO10615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3542-PA 1..799 17..815 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:50:24 Download gff for BO10615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3542-RA 155..961 7..815 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:23 Download gff for BO10615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3542-RA 155..961 7..815 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:23 Download gff for BO10615.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3023380..3023794 7..423 99 -> Plus
2L 3023854..3024086 424..656 100 -> Plus
2L 3024143..3024301 657..815 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:50:24 Download gff for BO10615.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3023380..3023794 7..423 99 -> Plus
arm_2L 3023854..3024086 424..656 100 -> Plus
arm_2L 3024143..3024301 657..815 100   Plus

BO10615.complete Sequence

2452 bp (2452 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631815

> BO10615.complete
GAAGTTATCAGTCGACATGAATGTTCCTCCTAGCGTGGGCAATGGAGGAG
CGCCACCGGGAAGGGGCATAGGCTACACGCCGCCCGGTGCAATCGTGCCG
CAGTTTCCACCACCCGGATTTGGGGCCCCACCCCCACCGGAGCTGGCCGC
CGCCTTCGGGGTGATGGCCACCAGCACCGAGTGGACGGAGCACAAGGCGC
CGGACGGACGACCATACTATTACAATCAGAACACGAAGCAAAGCTCGTGG
GAGAAGCCGGAGGCTCTGATGACGCCCGCCGAGCTGCTGCACAACCAGTG
TCCCTGGAAGGAGTATCGCTCGGATACGGGCAAAGTGTACTACCACAACG
TGGCCACCAAGGAGACCTGCTGGGAGCCGCCGCCGGAGTACGTGGATATG
AAGGCCAAGGCGAAGGCGGAAGAAGCTGCTGCAGCCGCCAAAGCCGTAGC
AGCCATGACATCATCCAGCTTAGCCGGCATGGTGCCACCTGCTGCTCTGG
CTAGTATTCTTCCCGCTGCCCTGCCTGTTGCCCCCCGATTACCGACTCCT
GAGATCCACTCGCCGCTGACACCCAGCAGCAACGAGAACTCGTCATCAGC
GATGGATCAGGCCATGGCCGCCACGTTAGCGGCTATAGAGGTGCCACAAC
AAAATGCTAAGAAGGACGACAAGTCAGAGAGCGCTGTGGTGTTTAAGGAT
AAACGCGAGGCCATCGAGTCCTTTAAAGAGCTGCTGCGGGACCGCAATGT
GCCATCAAATGCGAACTGGGACCAGTGTGTGAAAATCATATCAAAGGATC
CGCGATACGCAGCCTTCAAAAATCTGAACGAGCGCAAGCAAACATTCAAT
GCCTACAAGACGCAGAAGATTAAGGACGAGCGCGAGGAGTCTCGCTTAAA
AGCCAAGAAGGCAAAAGAGGACTTGGAGCAGTTCCTTATGTCCAGCGATA
AGATGAACTCGCAGATGAAATATTTTCGTTGTGAAGAAGTATTTGCCGGA
ACGCGAACATGGACCGCGGTGCCGGAACCGGATCGGCGAGATATATACGA
GGACTGTATATTTAATTTAGCGAAGCGAGAGAAGGAAGAAGCGCGGTTGC
TGAAAAAACGAAACATGAAGGTTCTGGGCGAGCTGCTAGAGTCGATGACT
TCAATCAATCATGCCACCACCTGGTCAGAGGCTCAGGTTATGCTATTGGA
CAACGTAGCATTTAAGAATGATGTGACTCTGCTCGGAATGGACAAGGAGG
ACGCCCTAATTGTCTTCGAGGAGCACATTCGCACCTTGGAAAAGGAGGAG
GACGAGGAACGTGAGCGGGAAAAGAAGCGCATGAAGCGACAGCAGCGCAA
AAACAGGGACTCCTTTCTTGCGCTGCTCGACTCCCTGCATGAAGAGGGAA
AGCTCACTTCCATGTCGCTGTGGGTGGAGCTGTATCCCATCATATCAGCC
GATTTGCGATTCTCCGCTATGCTCGGCCAGAGCGGGTCTACACCCCTGGA
TCTTTTCAAGTTCTATGTGGAAAACCTGAAAGCCCGCTTCCATGATGAGA
AAAAAATAATAAGGGAGATCCTCAAGGAAAAGGCATTTGTTGTCCAAGCG
AAGACATCCTTCGAGGACTTTGCCACGGTCGTGTGTGAAGATAAGCGGTC
AGCCAGCCTGGACGCGGGAAATGTGAAGCTCACATACAACTCCCTGCTGG
AAAAGGCCGAGGCCATTGAAAAGGAACGGATGAAAGAGGAGGTGCGAAGG
TTGCGGAAACTAGAAAATGAAATTAAAAACGAATGGCTGGAGGCGAACGT
CTCAGTGGCCGAACCCTATGAGAGCGCCAAGAAGCTGGTAGAACACCTTG
AAGCATTTGCCCTTTATGAAAAAGAAATCGGTGTGGAGAAGATCTGGGAG
GACTTTGTTAAGGAAAGCGAAGATGCGTGCAGCCATCATCACTCGCGATC
ACGAAAATCTAAGAAAAACAAGAAGCACAAAAAACGAGTACGGTCCGTCT
CGAGATCAGACATCGAGAATGAGCATATAGAAGTGGAGAAGTCCAAGCGA
AGGCGCTCCAAGACACGATCGCATTCCCTGACCTCAATTGGCAGCATCGA
GAGCGAAAAATTGCTGAAGAAGAAAAAGAAGCGCAAGAACAAACTGCGAG
GTTCCTCCTGCGAATCGGATGTTCCAGGCATTCAATCGCCGGGAACTCAA
GCTCTACTTCAGAACGACTCAAACTCGCACTCACCCGCAAAGAAAAAGAA
GAAGGAGAAGCGAGCTAAGAAGGACAAGCGACACAACAGGCACAATCGAT
CCGGCACGCCCCTTAGTCCTGCCCAGTCCGTCGAGTCGTCTGGATCGCGA
AACGAGGAGCTGACGTTAAGTGACGGCGAGCTGGAATCGAAGCGAGCGGC
TCTTCTAGCCCAACTCAGCGAGCAGCTCGACGAGGCAAGCTTTCTAGACC
AT

BO10615.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3542-RA 2421 CG3542-PA 1..2418 17..2434 12090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3542-RA 2906 CG3542-RA 163..2580 17..2434 12090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3024142..3025192 656..1706 5255 100 Plus
2L 23513712 2L 3023388..3023794 17..423 2035 100 Plus
2L 23513712 2L 3025255..3025622 1704..2071 1840 100 Plus
2L 23513712 2L 3025832..3026113 2153..2434 1410 100 Plus
2L 23513712 2L 3023854..3024090 424..660 1170 99.6 Plus
2L 23513712 2L 3025688..3025769 2071..2152 410 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:21:30 has no hits.

BO10615.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:18 Download gff for BO10615.complete
Subject Subject Range Query Range Percent Splice Strand
CG3542-RA 1..2421 17..2437 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:38 Download gff for BO10615.complete
Subject Subject Range Query Range Percent Splice Strand
CG3542-RA 146..2580 7..2441 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:56 Download gff for BO10615.complete
Subject Subject Range Query Range Percent Splice Strand
CG3542-RA 163..2580 17..2436 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:19 Download gff for BO10615.complete
Subject Subject Range Query Range Percent Splice Strand
CG3542-RA 146..2580 7..2441 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:41 Download gff for BO10615.complete
Subject Subject Range Query Range Percent Splice Strand
CG3542-RA 163..2580 17..2436 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:41 Download gff for BO10615.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3025257..3025622 1706..2071 100 -> Plus
2L 3025689..3025769 2072..2152 100 -> Plus
2L 3025832..3026113 2153..2436 99   Plus
2L 3023388..3023794 17..423 100 -> Plus
2L 3023854..3024086 424..656 100 -> Plus
2L 3024143..3025191 657..1705 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:56 Download gff for BO10615.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3023388..3023794 17..423 100 -> Plus
arm_2L 3023854..3024086 424..656 100 -> Plus
arm_2L 3024143..3025191 657..1705 100 -> Plus
arm_2L 3025257..3025622 1706..2071 100 -> Plus
arm_2L 3025689..3025769 2072..2152 100 -> Plus
arm_2L 3025832..3026113 2153..2436 99   Plus

BO10615.pep Sequence

Translation from 16 to 2452

> BO10615.pep
MNVPPSVGNGGAPPGRGIGYTPPGAIVPQFPPPGFGAPPPPELAAAFGVM
ATSTEWTEHKAPDGRPYYYNQNTKQSSWEKPEALMTPAELLHNQCPWKEY
RSDTGKVYYHNVATKETCWEPPPEYVDMKAKAKAEEAAAAAKAVAAMTSS
SLAGMVPPAALASILPAALPVAPRLPTPEIHSPLTPSSNENSSSAMDQAM
AATLAAIEVPQQNAKKDDKSESAVVFKDKREAIESFKELLRDRNVPSNAN
WDQCVKIISKDPRYAAFKNLNERKQTFNAYKTQKIKDEREESRLKAKKAK
EDLEQFLMSSDKMNSQMKYFRCEEVFAGTRTWTAVPEPDRRDIYEDCIFN
LAKREKEEARLLKKRNMKVLGELLESMTSINHATTWSEAQVMLLDNVAFK
NDVTLLGMDKEDALIVFEEHIRTLEKEEDEEREREKKRMKRQQRKNRDSF
LALLDSLHEEGKLTSMSLWVELYPIISADLRFSAMLGQSGSTPLDLFKFY
VENLKARFHDEKKIIREILKEKAFVVQAKTSFEDFATVVCEDKRSASLDA
GNVKLTYNSLLEKAEAIEKERMKEEVRRLRKLENEIKNEWLEANVSVAEP
YESAKKLVEHLEAFALYEKEIGVEKIWEDFVKESEDACSHHHSRSRKSKK
NKKHKKRVRSVSRSDIENEHIEVEKSKRRRSKTRSHSLTSIGSIESEKLL
KKKKKRKNKLRGSSCESDVPGIQSPGTQALLQNDSNSHSPAKKKKKEKRA
KKDKRHNRHNRSGTPLSPAQSVESSGSRNEELTLSDGELESKRAALLAQL
SEQLDEASFLDH

BO10615.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3542-PA 806 CG3542-PA 1..806 1..806 4140 100 Plus
CG42724-PK 1123 CG42724-PK 195..892 1..711 213 20.8 Plus
CG42724-PC 1123 CG42724-PC 195..892 1..711 213 20.8 Plus
CG42724-PM 761 CG42724-PM 441..720 54..367 197 23.9 Plus
CG42724-PI 763 CG42724-PI 441..717 54..364 196 24.1 Plus
CG42724-PM 761 CG42724-PM 195..718 1..517 184 22 Plus