Clone Sequence Records
BO10622.3prime Sequence
885 bp (831 high quality bases) assembled on 2006-04-19
> BO10622.3prime
ATGGTCTAGAAAGCTTGCACTTCGCACGGTTGTGGCTGCATCGGGCACCG
CAGTTGAACCTTCCGGAAGTTCCCGCACCAGGGAAAGCAGCTTCTCCAAC
TTGCCAATCTGGAGGGTGTTCTGGTCGAGATACAGCTGCTTCTTCGGCGG
CTTCACCATCATCCGGAGATTGGGCGATAGCTTCAGCGAAGTGGTGACGC
CCTTCTCATCGCCCACCACAATGAAGGCGAGCTTCTCGTTGAAGGATAAC
CTGGTGAGCTTGTTCTTTCGCTTGGGCACCACGGCCTGGATGCAGATGGC
CTTGTACTTATTCACATTTAGGTCGAAAACGTGGACCTTGCCCTCGGTGG
TCACCGCTGCGAAGACGGTGCTCGAGTAAGGTGCCCACTTGACATCGCCA
ACGGCGGCACCAAGATCGAATATGAACAGCGGATCTGGACGCATATCCTC
CCACACCTTGACCATCCAGTCGGCGCCACAGGACACGAAGATGTTGCTGT
TGAAGCGATTGAAGTCAATGCGATAGACGGACATGTTGTGGGCATAGTAG
GTCATCAGGTATTTGGAGCTGAACGCCGTGCTGCACTTGTAGATGTAACC
ACACTCGGTGCCCACCAGAAATATCTTATTATCCACTGGATGGAACACCA
TGCAGGATCCTCCGCTCTTCAGCGTGACCTTTGTGCCATCTGGTCCGTCA
ACCAGTCCGTTTTCGCGGTACAATGTGATGATGGTGGTTACCCACAGTTT
GTTCTGCATGAGAATCCAGTTGAAGACGCGCCCATCGGAGGACACCGAAA
AGAAGTTCACCTCGCCATCGGCCATGTCCAAACCCCACTTGATCTGCCAC
ACGCACTCGCCGTGCTTGCAGTTGACTCCTCTGGA
BO10622.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9313-PA | 2220 | CG9313-RA | 1351..2217 | 885..19 | 4335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:13:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9313-RB | 2652 | CG9313-RB | 1539..2405 | 885..19 | 4335 | 100 | Minus |
| CG9313-RC | 3069 | CG9313-RC | 1956..2822 | 885..19 | 4335 | 100 | Minus |
| CG9313-RA | 2649 | CG9313-RA | 1536..2402 | 885..19 | 4335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:13:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20982860..20983543 | 885..202 | 3420 | 100 | Minus |
| 2R | 25286936 | 2R | 20983613..20983796 | 202..19 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:13:49 has no hits.
BO10622.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:44:19 Download gff for
BO10622.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-PA | 1352..2220 | 15..884 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:59:41 Download gff for
BO10622.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-PA | 1352..2220 | 15..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:27:37 Download gff for
BO10622.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-RA | 1537..2405 | 15..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:43:30 Download gff for
BO10622.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-RA | 1537..2405 | 15..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:43:30 Download gff for
BO10622.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20982861..20983542 | 203..884 | 100 | -> | Minus |
| 2R | 20983613..20983799 | 15..202 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:27:37 Download gff for
BO10622.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16870366..16871047 | 203..884 | 100 | -> | Minus |
| arm_2R | 16871118..16871304 | 15..202 | 98 | | Minus |
BO10622.5prime Sequence
843 bp (832 high quality bases) assembled on 2006-04-19
> BO10622.5prime
GAAGTTATCAGTCGACATGGCCACAAAACCGGGAAAAGGTGACGGCAAGC
AGGTGAAGGGAAAAAGGACCTCCAAGAACAAGACAGATGGCCCCGGCGGT
GGTGGCGGCGATGCCGATGACTTCGATGCCTGGATGAAGTCGCGCCAGCT
GCTCAAGCCCGATGACCAGCTCGATCTCACCGAGGCGGAACTGGGCGAGG
AGATCACCAAGGTGCTGACTCCCACCAACACGAACATCGTTCGCAATCTC
GTGGTCTATAGCTTCAAGGAAGGCGAGTTTGTTCCGGCTCCGTTGCCCGG
CAATACGGTCACCCTAATCGCCTTTGCCGGCAACTCACTTCACGTGGACT
CCGATGAGGGTCGCCGTCAGATCGAGGAGTCCGACGAGATTGGCTACCCA
CTGCCCATGCCCAACTACACTGTGGTGGAGCAGCGCGAGACGGATAACGT
CGACGGTGAGGAGGGAGAGGGCGAGGAGGATGATGATGGGGCCACCGCAA
AGGACGCCGCCGTAGAAGACGAGGATGTCGAGGAGGAGGACGACGAGGAG
GCCAAGGGCACCGAAGGCGATGAGGGCGAGGGCGAAGGCGAGGGAGAGGG
TGCTGCTGCCCGCCAGGAGGACGATGAGCCCGCCCACCAAGCGGCGGCCG
TTTCATCCAAGAAACGCAAGCTAATCAACCAGTTCAACTACTGCGAACGT
GGTGCCCTCACCTACACAAATCCCAAAAGGAATGTAGACACCCAGACCAT
ACCCCCACCCCGTTCCCAGTTTGGAGCCAATGTGCTGCAGTGGGTCATCT
ATGATTCCTATATGGAGAACTTTGCGGAGTCCCAGAAGGACCG
BO10622.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9313-PA | 2220 | CG9313-RA | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:44:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9313-RC | 3069 | CG9313-RC | 606..1430 | 17..841 | 4125 | 100 | Plus |
| CG9313-RA | 2649 | CG9313-RA | 186..1010 | 17..841 | 4125 | 100 | Plus |
| CG9313-RB | 2652 | CG9313-RB | 186..1013 | 17..841 | 4085 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:44:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20981311..20981741 | 65..495 | 2155 | 100 | Plus |
| 2R | 25286936 | 2R | 20981801..20982035 | 496..730 | 1175 | 100 | Plus |
| 2R | 25286936 | 2R | 20982096..20982207 | 730..841 | 560 | 100 | Plus |
| 2R | 25286936 | 2R | 20979506..20979553 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:44:49 has no hits.
BO10622.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:44:20 Download gff for
BO10622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-PA | 1..826 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:59:43 Download gff for
BO10622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-PA | 1..826 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:46:04 Download gff for
BO10622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-RA | 179..1011 | 9..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:08:23 Download gff for
BO10622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-RA | 179..1011 | 9..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:08:23 Download gff for
BO10622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20981801..20982035 | 496..730 | 100 | -> | Plus |
| 2R | 20982097..20982208 | 731..843 | 99 | | Plus |
| 2R | 20981313..20981741 | 67..495 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:46:04 Download gff for
BO10622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16868818..16869246 | 67..495 | 100 | -> | Plus |
| arm_2R | 16869306..16869540 | 496..730 | 100 | -> | Plus |
| arm_2R | 16869602..16869713 | 731..843 | 99 | | Plus |
BO10622.complete Sequence
2251 bp (2251 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631817
> BO10622.complete
GAAGTTATCAGTCGACATGGCCACAAAACCGGGAAAAGGTGACGGCAAGC
AGGTGAAGGGAAAAAGGACCTCCAAGAACAAGACAGATGGCCCCGGCGGT
GGTGGCGGCGATGCCGATGACTTCGATGCCTGGATGAAGTCGCGCCAGCT
GCTCAAGCCCGATGACCAGCTCGATCTCACCGAGGCGGAACTGGGCGAGG
AGATCACCAAGGTGCTGACTCCCACCAACACGAACATCGTTCGCAATCTC
GTGGTCTATAGCTTCAAGGAAGGCGAGTTTGTTCCGGCTCCGTTGCCCGG
CAATACGGTCACCCTAATCGCCTTTGCCGGCAACTCACTTCACGTGGACT
CCGATGAGGGTCGCCGTCAGATCGAGGAGTCCGACGAGATTGGCTACCCA
CTGCCCATGCCCAACTACACTGTGGTGGAGCAGCGCGAGACGGATAACGT
CGACGGTGAGGAGGGAGAGGGCGAGGAGGATGATGATGGGGCCACCGCAA
AGGACGCCGCCGTAGAAGACGAGGATGTCGAGGAGGAGGACGACGAGGAG
GCCAAGGGCACCGAAGGCGATGAGGGCGAGGGCGAAGGCGAGGGAGAGGG
TGCTGCTGCCCGCCAGGAGGACGATGAGCCCGCCCACCAAGCGGCGGCCG
TTTCATCCAAGAAACGCAAGCTAATCAACCAGTTCAACTACTGCGAACGT
GGTGCCCTCACCTACACAAATCCCAAAAGGAATGTAGACACCCAGACCAT
ACCCCCACCCCGTTCCCAGTTTGGAGCCAATGTGCTGCAGTGGGTCATCT
ATGATTCCTATATGGAGAACTTTGCGGAGTCCCAGAAGGACGGCACCAAG
AAGGAGGAGCGCAAGCGCGGCAAGAGGGAGAAGAAGTTCCGGGATAAGTC
GGCCATTGCCGAGCAGCTCAACAAGAAGTATCTCAAATGCTGGCAGATAC
TCGAGCGCATGATCAATCAGAATATCTACGATGACATCGCCCACGACTAT
CGCTACTGGGAGGATCCGGCTGATGAGTTTCGTGAGGGTGAGGGCAACCT
GCTGCCACTCTGGAAGTTTCAGTACGACAAGACCAAGAAGATGAACGTCA
CCGACATCCTGTTCAATCCGAGCTACTATGATCTCTTCGCCGTCTGTTTC
GGATCGCATGACTTCATGAAGCAGACCAATGAGGGTTACTTGTGTCTGTT
CACCGTTAAGAATCCCTCATTCCCGGACTATATAATTCAAACCGACTGTG
GTGTCATGTGCTGTGACATCCACCCAACGTATCCTTTCCTGGCCGTAATC
GGTCTCTATGACGGCAATGTGGCGGTCTACAATCTGCGCGAGGACTGCAA
GGAACCACTCTATGTGTCCAGAGGAGTCAACTGCAAGCACGGCGAGTGCG
TGTGGCAGATCAAGTGGGGTTTGGACATGGCCGATGGCGAGGTGAACTTC
TTTTCGGTGTCCTCCGATGGGCGCGTCTTCAACTGGATTCTCATGCAGAA
CAAACTGTGGGTAACCACCATCATCACATTGTACCGCGAAAACGGACTGG
TTGACGGACCAGATGGCACAAAGGTCACGCTGAAGAGCGGAGGATCCTGC
ATGGTGTTCCATCCAGTGGATAATAAGATATTTCTGGTGGGCACCGAGTG
TGGTTACATCTACAAGTGCAGCACGGCGTTCAGCTCCAAATACCTGATGA
CCTACTATGCCCACAACATGTCCGTCTATCGCATTGACTTCAATCGCTTC
AACAGCAACATCTTCGTGTCCTGTGGCGCCGACTGGATGGTCAAGGTGTG
GGAGGATATGCGTCCAGATCCGCTGTTCATATTCGATCTTGGTGCCGCCG
TTGGCGATGTCAAGTGGGCACCTTACTCGAGCACCGTCTTCGCAGCGGTG
ACCACCGAGGGCAAGGTCCACGTTTTCGACCTAAATGTGAATAAGTACAA
GGCCATCTGCATCCAGGCCGTGGTGCCCAAGCGAAAGAACAAGCTCACCA
GGTTATCCTTCAACGAGAAGCTCGCCTTCATTGTGGTGGGCGATGAGAAG
GGCGTCACCACTTCGCTGAAGCTATCGCCCAATCTCCGGATGATGGTGAA
GCCGCCGAAGAAGCAGCTGTATCTCGACCAGAACACCCTCCAGATTGGCA
AGTTGGAGAAGCTGCTTTCCCTGGTGCGGGAACTTCCGGAAGGTTCAACT
GCGGTGCCCGATGCAGCCACAACCGTGCGAAGTGCAAGCTTTCTAGACCA
T
BO10622.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:13:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9313-RC | 2220 | CG9313-PC | 1..2217 | 17..2233 | 11085 | 100 | Plus |
| CG9313-RA | 2220 | CG9313-PA | 1..2217 | 17..2233 | 11085 | 100 | Plus |
| CG9313-RB | 2223 | CG9313-PB | 1..2220 | 17..2233 | 11020 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9313-RC | 3069 | CG9313-RC | 606..2822 | 17..2233 | 11085 | 100 | Plus |
| CG9313-RA | 2649 | CG9313-RA | 186..2402 | 17..2233 | 11085 | 100 | Plus |
| CG9313-RB | 2652 | CG9313-RB | 186..2405 | 17..2233 | 11020 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20982729..20983543 | 1236..2050 | 4075 | 100 | Plus |
| 2R | 25286936 | 2R | 20981311..20981741 | 65..495 | 2155 | 100 | Plus |
| 2R | 25286936 | 2R | 20982096..20982523 | 730..1157 | 2140 | 100 | Plus |
| 2R | 25286936 | 2R | 20981801..20982035 | 496..730 | 1175 | 100 | Plus |
| 2R | 25286936 | 2R | 20983613..20983796 | 2050..2233 | 920 | 100 | Plus |
| 2R | 25286936 | 2R | 20982586..20982663 | 1158..1235 | 390 | 100 | Plus |
| 2R | 25286936 | 2R | 20979506..20979553 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:13:19 has no hits.
BO10622.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:08 Download gff for
BO10622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-RA | 1..2220 | 17..2237 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:29 Download gff for
BO10622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-RA | 156..2382 | 9..2237 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:57 Download gff for
BO10622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-RA | 186..2402 | 17..2235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:08 Download gff for
BO10622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-RA | 156..2382 | 9..2237 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:16 Download gff for
BO10622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-RA | 186..2402 | 17..2235 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:16 Download gff for
BO10622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20979506..20979557 | 17..66 | 94 | -> | Plus |
| 2R | 20981313..20981741 | 67..495 | 100 | -> | Plus |
| 2R | 20981801..20982035 | 496..730 | 100 | -> | Plus |
| 2R | 20982097..20982523 | 731..1157 | 100 | -> | Plus |
| 2R | 20982586..20982663 | 1158..1235 | 100 | -> | Plus |
| 2R | 20982729..20983542 | 1236..2049 | 100 | -> | Plus |
| 2R | 20983613..20983796 | 2050..2235 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:57 Download gff for
BO10622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16867011..16867062 | 17..66 | 94 | -> | Plus |
| arm_2R | 16868818..16869246 | 67..495 | 100 | -> | Plus |
| arm_2R | 16869306..16869540 | 496..730 | 100 | -> | Plus |
| arm_2R | 16869602..16870028 | 731..1157 | 100 | -> | Plus |
| arm_2R | 16870091..16870168 | 1158..1235 | 100 | -> | Plus |
| arm_2R | 16870234..16871047 | 1236..2049 | 100 | -> | Plus |
| arm_2R | 16871118..16871301 | 2050..2235 | 98 | | Plus |
BO10622.pep Sequence
Translation from 16 to 2251
> BO10622.pep
MATKPGKGDGKQVKGKRTSKNKTDGPGGGGGDADDFDAWMKSRQLLKPDD
QLDLTEAELGEEITKVLTPTNTNIVRNLVVYSFKEGEFVPAPLPGNTVTL
IAFAGNSLHVDSDEGRRQIEESDEIGYPLPMPNYTVVEQRETDNVDGEEG
EGEEDDDGATAKDAAVEDEDVEEEDDEEAKGTEGDEGEGEGEGEGAAARQ
EDDEPAHQAAAVSSKKRKLINQFNYCERGALTYTNPKRNVDTQTIPPPRS
QFGANVLQWVIYDSYMENFAESQKDGTKKEERKRGKREKKFRDKSAIAEQ
LNKKYLKCWQILERMINQNIYDDIAHDYRYWEDPADEFREGEGNLLPLWK
FQYDKTKKMNVTDILFNPSYYDLFAVCFGSHDFMKQTNEGYLCLFTVKNP
SFPDYIIQTDCGVMCCDIHPTYPFLAVIGLYDGNVAVYNLREDCKEPLYV
SRGVNCKHGECVWQIKWGLDMADGEVNFFSVSSDGRVFNWILMQNKLWVT
TIITLYRENGLVDGPDGTKVTLKSGGSCMVFHPVDNKIFLVGTECGYIYK
CSTAFSSKYLMTYYAHNMSVYRIDFNRFNSNIFVSCGADWMVKVWEDMRP
DPLFIFDLGAAVGDVKWAPYSSTVFAAVTTEGKVHVFDLNVNKYKAICIQ
AVVPKRKNKLTRLSFNEKLAFIVVGDEKGVTTSLKLSPNLRMMVKPPKKQ
LYLDQNTLQIGKLEKLLSLVRELPEGSTAVPDAATTVRSASFLDH
BO10622.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9313-PC | 739 | CG9313-PC | 1..739 | 1..739 | 3952 | 100 | Plus |
| CG9313-PA | 739 | CG9313-PA | 1..739 | 1..739 | 3952 | 100 | Plus |
| CG9313-PB | 740 | CG9313-PB | 1..740 | 1..739 | 3940 | 99.9 | Plus |
| Dic61B-PB | 684 | CG7051-PB | 294..632 | 355..681 | 310 | 28.7 | Plus |
| Dic61B-PA | 764 | CG7051-PA | 374..712 | 355..681 | 310 | 28.7 | Plus |
