Clone Sequence Records
BO10623.3prime Sequence
885 bp (806 high quality bases) assembled on 2006-04-19
> BO10623.3prime
ATGGTCTAGAAAGCTTGCGAACTCTGTGTGAAAACTATTCGCCGTATCGA
TCATCTTGGATTGCAGAAATATCTCGGCATGATCAGTCATCTCTTTGAGG
GTCAGCAGCTCGTCCTTGTTCTCGTCGCACAGGCTGAACAAAGTGGCCGC
CTCCTGGAGGGCATACCGCGGAGTCTTGGGGTTCACATAGTTCAGTAGCT
CACCCCGATCCGCCTTGCCATCGTGATTCTTATCGATGATCCGCTTGAAC
TCCTCGCGTCGCTCCACCAAAGTCTTCGATATCAGAGATTTTCGCATCAG
ATCATCGTCATCATCCACATTCAGATCGGAAAATTCCTCCAGGGTTAGCT
GATCGTCTCCATCCTGATCGAATTGGCGCAGCAGATCATCGACCAGCTCC
AAGAGATTGGATACACTGGACTCGGGATGGCGGAAACTCAGGTATTCATC
GATGGTCAGTGTGAACAGATCGGTTCGAGCTGCCTCCGACCACCGGGCCT
TGTCCCTCATCATATCCTCCCTGGCCCTGCGGTTCAGCGCCGTGTGGCGA
ATCTCGTCATGCTCATCGATGTCCGCCTCTGTCATGCCGTGCTCCCTAAG
GAAGAAGCGGTGGTACTCGTCCCAGGTGATCAGACCATCCGCAGGACCAA
TATCCACGCGTCGGAACTCGCGGGCATTGTTCATAATCGCCTCATCAATG
TGCTCCACAATCCGGCGATTTATGTACTGCCCCAATTCCTGGATTGACAG
AATGCCATCGCGACTGCGATCGGCACGTTTGAAAGCTTTTGCCAGTATTT
GCTTCTCATTCACATTGCTGGCCGCTAAAATAACTGTTTCTGGCTGGTTA
GGGGATTTGCTGGCATTTTGCACTTTTTGCGACTG
BO10623.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31475-PA | 1257 | CG31475-RA | 388..1254 | 885..19 | 4335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31475-RB | 2448 | CG31475-RB | 1335..2201 | 885..19 | 4335 | 100 | Minus |
CG31475-RA | 2688 | CG31475-RA | 1575..2441 | 885..19 | 4335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:41:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19200021..19200706 | 776..91 | 3430 | 100 | Minus |
3R | 32079331 | 3R | 19190467..19190576 | 885..776 | 550 | 100 | Minus |
3R | 32079331 | 3R | 19200776..19200849 | 92..19 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:41:18 has no hits.
BO10623.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:44:21 Download gff for
BO10623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-PA | 388..1257 | 18..885 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:59:44 Download gff for
BO10623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-PA | 388..1257 | 18..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:14:10 Download gff for
BO10623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-RA | 1575..2447 | 11..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:25 Download gff for
BO10623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-RA | 1575..2447 | 11..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:25 Download gff for
BO10623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19190467..19190576 | 776..885 | 100 | -> | Minus |
3R | 19200022..19200706 | 91..775 | 100 | -> | Minus |
3R | 19200778..19200855 | 11..90 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:14:10 Download gff for
BO10623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15016189..15016298 | 776..885 | 100 | -> | Minus |
arm_3R | 15025744..15026428 | 91..775 | 100 | -> | Minus |
arm_3R | 15026500..15026577 | 11..90 | 96 | | Minus |
BO10623.5prime Sequence
859 bp (760 high quality bases) assembled on 2006-04-19
> BO10623.5prime
GAAGTTATCAGTCGACATGACTTTCGTTAACAAGCTGAGCAAAAGCTTCC
GCTGGCTGCGCTGCTCGACATTGTGCGCAATTTTGTTTTATATGTTCTTC
ATTGGCCTGATCCTGCACAGCACCAGCCAGAAGTTGCAGCAGCAGCTAAA
GGAGCAGGGAACCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGTAGCAGTA
GCAGCAGCAGTAGCAGCAGCAGTAGCACGCAGGCAGACACAAAAATGGCG
CCCAACGTGGGGCATAATGGCGCCCAACGTTGGCCGAATACGCTGCAGGA
ACTGGAGCAGCAGCAACAAAAACACGAGCAAAGCATGAGACTCCAGCCTG
TGGCAAACAATTTGGATTCGAGGAACGAGAATAACCATCGCCAACCCCAT
CCACAGTCGCAAAAAGTGCAAAATGCCAGCAAATCCCCTAACCAGCCAGA
AACAGTTATTTTAGCGGCCAGCAATGTGAATGAGAAGCAAATACTGGCAA
AAGCTTTCAAACGTGCCGATCGCAGTCGCGATGGCATTCTGTCAATCCAG
GAATTGGGGCAGTACATAAATCGCCGGATTGTGGAGCACATTGATGAGGC
GATTATGAACAATGCCCGCGAGTTCCGACGCGTGGATATTGGTCCTGCGG
ATGGTCTGATCACCTGGGACGAGTACCACCGCTTCTTCCTTAGGGAGCAC
GGCATGACAGAGGCGGACATCGATGAGCATGACGAGATTCGCCACACGGC
GCTGAACCGCAGGGCCAGGGAGGATATGATGAGGGACAAGGCCCGGTGGT
CGGAGGCAGCTCGAACCGATCTGTTCACACTGACCATCGATGAATACCTG
AAGTTCCGC
BO10623.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31475-PA | 1257 | CG31475-RA | 1..835 | 17..851 | 4175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31475-RB | 2448 | CG31475-RB | 948..1790 | 17..859 | 4185 | 99.8 | Plus |
CG31475-RA | 2688 | CG31475-RA | 1188..2030 | 17..859 | 4185 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19190080..19190576 | 17..513 | 2485 | 100 | Plus |
3R | 32079331 | 3R | 19200021..19200367 | 513..859 | 1705 | 99.4 | Plus |
Blast to na_te.dros performed 2015-02-04 04:26:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6968 | 117..356 | 295 | 63.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2520 | 136..347 | 260 | 61.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6855 | 185..330 | 173 | 63.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2220..2428 | 116..324 | 133 | 55.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6865 | 199..346 | 132 | 59.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2616..2830 | 118..330 | 123 | 55.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6905 | 292..436 | 116 | 56.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6769 | 288..339 | 115 | 73.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6916 | 292..474 | 111 | 59 | Plus |
BO10623.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:44:22 Download gff for
BO10623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:59:45 Download gff for
BO10623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:01:42 Download gff for
BO10623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-RA | 1181..2030 | 9..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:36:33 Download gff for
BO10623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-RA | 1181..2030 | 9..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:36:33 Download gff for
BO10623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19190073..19190576 | 9..513 | 99 | -> | Plus |
3R | 19200022..19200367 | 514..859 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:01:42 Download gff for
BO10623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15015795..15016298 | 9..513 | 99 | -> | Plus |
arm_3R | 15025744..15026089 | 514..859 | 99 | | Plus |
BO10623.complete Sequence
1288 bp (1288 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631818
> BO10623.complete
GAAGTTATCAGTCGACATGACTTTCGTTAACAAGCTGAGCAAAAGCTTCC
GCTGGCTGCGCTGCTCGACATTGTGCGCAATTTTGTTTTATATGTTCTTC
ATTGGCCTGATCCTGCACAGCACCAGCCAGAAGTTGCAGCAGCAGCTAAA
GGAGCAGGGAACCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGTAGCAGTA
GCAGCAGCAGTAGCAGCAGCAGTAGCACGCAGGCAGACACAAAAATGGCG
CCCAACGTGGGGCATAATGGCGCCCAACGTTGGCCGAATACGCTGCAGGA
ACTGGAGCAGCAGCAACAAAAACACGAGCAAAGCATGAGACTCCAGCCTG
TGGCAAACAATTTGGATTCGAGGAACGAGAATAACCATCGCCAACCCCAT
CCACAGTCGCAAAAAGTGCAAAATGCCAGCAAATCCCCTAACCAGCCAGA
AACAGTTATTTTAGCGGCCAGCAATGTGAATGAGAAGCAAATACTGGCAA
AAGCTTTCAAACGTGCCGATCGCAGTCGCGATGGCATTCTGTCAATCCAG
GAATTGGGGCAGTACATAAATCGCCGGATTGTGGAGCACATTGATGAGGC
GATTATGAACAATGCCCGCGAGTTCCGACGCGTGGATATTGGTCCTGCGG
ATGGTCTGATCACCTGGGACGAGTACCACCGCTTCTTCCTTAGGGAGCAC
GGCATGACAGAGGCGGACATCGATGAGCATGACGAGATTCGCCACACGGC
GCTGAACCGCAGGGCCAGGGAGGATATGATGAGGGACAAGGCCCGGTGGT
CGGAGGCAGCTCGAACCGATCTGTTCACACTGACCATCGATGAATACCTG
AGTTTCCGCCATCCCGAGTCCAGTGTATCCAATCTCTTGGAGCTGGTCGA
TGATCTGCTGCGCCAATTCGATCAGGATGGAGACGATCAGCTAACCCTGG
AGGAATTTTCCGATCTGAATGTGGATGATGACGATGATCTGATGCGAAAA
TCTCTGATATCGAAGACTTTGGTGGAGCGACGCGAGGAGTTCAAGCGGAT
CATCGATAAGAATCACGATGGCAAGGCGGATCGGGGTGAGCTACTGAACT
ATGTGAACCCCAAGACTCCGCGGTATGCCCTCCAGGAGGCGGCCACTTTG
TTCAGCCTGTGCGACGAGAACAAGGACGAGCTGCTGACCCTCAAAGAGAT
GACTGATCATGCCGAGATATTTCTGCAATCCAAGATGATCGATACGGCGA
ATAGTTTTCACACAGAGTTCGCAAGCTTTCTAGACCAT
BO10623.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:38:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31475-RB | 1257 | CG31475-PB | 1..1254 | 17..1270 | 6270 | 100 | Plus |
CG31475-RA | 1257 | CG31475-PA | 1..1254 | 17..1270 | 6270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:38:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31475-RB | 2448 | CG31475-RB | 948..2201 | 17..1270 | 6270 | 100 | Plus |
CG31475-RA | 2688 | CG31475-RA | 1188..2441 | 17..1270 | 6270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:38:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19200021..19200706 | 513..1198 | 3430 | 100 | Plus |
3R | 32079331 | 3R | 19190080..19190576 | 17..513 | 2485 | 100 | Plus |
3R | 32079331 | 3R | 19200776..19200849 | 1197..1270 | 370 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6968 | 117..356 | 295 | 63.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6855 | 185..330 | 173 | 63.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6865 | 199..346 | 132 | 59.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2616..2830 | 118..330 | 123 | 55.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6905 | 292..436 | 116 | 56.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6769 | 288..339 | 115 | 73.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6916 | 292..474 | 111 | 59 | Plus |
BO10623.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:14 Download gff for
BO10623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-RA | 1..1257 | 17..1271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:01:12 Download gff for
BO10623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-RA | 1186..2439 | 17..1272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:39 Download gff for
BO10623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-RA | 1188..2441 | 17..1272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:15 Download gff for
BO10623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-RA | 1179..2445 | 9..1278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:59 Download gff for
BO10623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31475-RA | 1188..2441 | 17..1272 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:59 Download gff for
BO10623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19190080..19190576 | 17..513 | 100 | -> | Plus |
3R | 19200022..19200706 | 514..1198 | 100 | -> | Plus |
3R | 19200778..19200849 | 1199..1272 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:39 Download gff for
BO10623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15015802..15016298 | 17..513 | 100 | -> | Plus |
arm_3R | 15025744..15026428 | 514..1198 | 100 | -> | Plus |
arm_3R | 15026500..15026571 | 1199..1272 | 97 | | Plus |
BO10623.pep Sequence
Translation from 16 to 1288
> BO10623.pep
MTFVNKLSKSFRWLRCSTLCAILFYMFFIGLILHSTSQKLQQQLKEQGTS
SSSSSSSSSSSSSSSSSSSSTQADTKMAPNVGHNGAQRWPNTLQELEQQQ
QKHEQSMRLQPVANNLDSRNENNHRQPHPQSQKVQNASKSPNQPETVILA
ASNVNEKQILAKAFKRADRSRDGILSIQELGQYINRRIVEHIDEAIMNNA
REFRRVDIGPADGLITWDEYHRFFLREHGMTEADIDEHDEIRHTALNRRA
REDMMRDKARWSEAARTDLFTLTIDEYLSFRHPESSVSNLLELVDDLLRQ
FDQDGDDQLTLEEFSDLNVDDDDDLMRKSLISKTLVERREEFKRIIDKNH
DGKADRGELLNYVNPKTPRYALQEAATLFSLCDENKDELLTLKEMTDHAE
IFLQSKMIDTANSFHTEFASFLDH
BO10623.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31475-PB | 418 | CG31475-PB | 1..418 | 1..418 | 2143 | 100 | Plus |
CG31475-PA | 418 | CG31475-PA | 1..418 | 1..418 | 2143 | 100 | Plus |
CG31650-PG | 339 | CG31650-PG | 35..324 | 102..409 | 182 | 23.2 | Plus |
CG31650-PF | 342 | CG31650-PF | 35..327 | 102..409 | 176 | 22.6 | Plus |
CG31650-PE | 342 | CG31650-PE | 35..327 | 102..409 | 176 | 22.6 | Plus |