Clone BO10623 Report

Search the DGRC for BO10623

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:106
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG31475-RA
Protein status:BO10623.pep: validated full length
Sequenced Size:1288

Clone Sequence Records

BO10623.3prime Sequence

885 bp (806 high quality bases) assembled on 2006-04-19

> BO10623.3prime
ATGGTCTAGAAAGCTTGCGAACTCTGTGTGAAAACTATTCGCCGTATCGA
TCATCTTGGATTGCAGAAATATCTCGGCATGATCAGTCATCTCTTTGAGG
GTCAGCAGCTCGTCCTTGTTCTCGTCGCACAGGCTGAACAAAGTGGCCGC
CTCCTGGAGGGCATACCGCGGAGTCTTGGGGTTCACATAGTTCAGTAGCT
CACCCCGATCCGCCTTGCCATCGTGATTCTTATCGATGATCCGCTTGAAC
TCCTCGCGTCGCTCCACCAAAGTCTTCGATATCAGAGATTTTCGCATCAG
ATCATCGTCATCATCCACATTCAGATCGGAAAATTCCTCCAGGGTTAGCT
GATCGTCTCCATCCTGATCGAATTGGCGCAGCAGATCATCGACCAGCTCC
AAGAGATTGGATACACTGGACTCGGGATGGCGGAAACTCAGGTATTCATC
GATGGTCAGTGTGAACAGATCGGTTCGAGCTGCCTCCGACCACCGGGCCT
TGTCCCTCATCATATCCTCCCTGGCCCTGCGGTTCAGCGCCGTGTGGCGA
ATCTCGTCATGCTCATCGATGTCCGCCTCTGTCATGCCGTGCTCCCTAAG
GAAGAAGCGGTGGTACTCGTCCCAGGTGATCAGACCATCCGCAGGACCAA
TATCCACGCGTCGGAACTCGCGGGCATTGTTCATAATCGCCTCATCAATG
TGCTCCACAATCCGGCGATTTATGTACTGCCCCAATTCCTGGATTGACAG
AATGCCATCGCGACTGCGATCGGCACGTTTGAAAGCTTTTGCCAGTATTT
GCTTCTCATTCACATTGCTGGCCGCTAAAATAACTGTTTCTGGCTGGTTA
GGGGATTTGCTGGCATTTTGCACTTTTTGCGACTG

BO10623.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG31475-PA 1257 CG31475-RA 388..1254 885..19 4335 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG31475-RB 2448 CG31475-RB 1335..2201 885..19 4335 100 Minus
CG31475-RA 2688 CG31475-RA 1575..2441 885..19 4335 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19200021..19200706 776..91 3430 100 Minus
3R 32079331 3R 19190467..19190576 885..776 550 100 Minus
3R 32079331 3R 19200776..19200849 92..19 370 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:41:18 has no hits.

BO10623.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:44:21 Download gff for BO10623.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31475-PA 388..1257 18..885 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:59:44 Download gff for BO10623.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31475-PA 388..1257 18..885 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:14:10 Download gff for BO10623.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31475-RA 1575..2447 11..885 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:25 Download gff for BO10623.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31475-RA 1575..2447 11..885 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:25 Download gff for BO10623.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19190467..19190576 776..885 100 -> Minus
3R 19200022..19200706 91..775 100 -> Minus
3R 19200778..19200855 11..90 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:14:10 Download gff for BO10623.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15016189..15016298 776..885 100 -> Minus
arm_3R 15025744..15026428 91..775 100 -> Minus
arm_3R 15026500..15026577 11..90 96   Minus

BO10623.5prime Sequence

859 bp (760 high quality bases) assembled on 2006-04-19

> BO10623.5prime
GAAGTTATCAGTCGACATGACTTTCGTTAACAAGCTGAGCAAAAGCTTCC
GCTGGCTGCGCTGCTCGACATTGTGCGCAATTTTGTTTTATATGTTCTTC
ATTGGCCTGATCCTGCACAGCACCAGCCAGAAGTTGCAGCAGCAGCTAAA
GGAGCAGGGAACCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGTAGCAGTA
GCAGCAGCAGTAGCAGCAGCAGTAGCACGCAGGCAGACACAAAAATGGCG
CCCAACGTGGGGCATAATGGCGCCCAACGTTGGCCGAATACGCTGCAGGA
ACTGGAGCAGCAGCAACAAAAACACGAGCAAAGCATGAGACTCCAGCCTG
TGGCAAACAATTTGGATTCGAGGAACGAGAATAACCATCGCCAACCCCAT
CCACAGTCGCAAAAAGTGCAAAATGCCAGCAAATCCCCTAACCAGCCAGA
AACAGTTATTTTAGCGGCCAGCAATGTGAATGAGAAGCAAATACTGGCAA
AAGCTTTCAAACGTGCCGATCGCAGTCGCGATGGCATTCTGTCAATCCAG
GAATTGGGGCAGTACATAAATCGCCGGATTGTGGAGCACATTGATGAGGC
GATTATGAACAATGCCCGCGAGTTCCGACGCGTGGATATTGGTCCTGCGG
ATGGTCTGATCACCTGGGACGAGTACCACCGCTTCTTCCTTAGGGAGCAC
GGCATGACAGAGGCGGACATCGATGAGCATGACGAGATTCGCCACACGGC
GCTGAACCGCAGGGCCAGGGAGGATATGATGAGGGACAAGGCCCGGTGGT
CGGAGGCAGCTCGAACCGATCTGTTCACACTGACCATCGATGAATACCTG
AAGTTCCGC

BO10623.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG31475-PA 1257 CG31475-RA 1..835 17..851 4175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG31475-RB 2448 CG31475-RB 948..1790 17..859 4185 99.8 Plus
CG31475-RA 2688 CG31475-RA 1188..2030 17..859 4185 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19190080..19190576 17..513 2485 100 Plus
3R 32079331 3R 19200021..19200367 513..859 1705 99.4 Plus
Blast to na_te.dros performed 2015-02-04 04:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6733..6968 117..356 295 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2520 136..347 260 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6855 185..330 173 63.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2220..2428 116..324 133 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6865 199..346 132 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2616..2830 118..330 123 55.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6905 292..436 116 56.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6769 288..339 115 73.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6742..6916 292..474 111 59 Plus

BO10623.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:44:22 Download gff for BO10623.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31475-PA 1..843 17..859 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:59:45 Download gff for BO10623.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31475-PA 1..843 17..859 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:01:42 Download gff for BO10623.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31475-RA 1181..2030 9..859 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:36:33 Download gff for BO10623.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31475-RA 1181..2030 9..859 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:36:33 Download gff for BO10623.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19190073..19190576 9..513 99 -> Plus
3R 19200022..19200367 514..859 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:01:42 Download gff for BO10623.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15015795..15016298 9..513 99 -> Plus
arm_3R 15025744..15026089 514..859 99   Plus

BO10623.complete Sequence

1288 bp (1288 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631818

> BO10623.complete
GAAGTTATCAGTCGACATGACTTTCGTTAACAAGCTGAGCAAAAGCTTCC
GCTGGCTGCGCTGCTCGACATTGTGCGCAATTTTGTTTTATATGTTCTTC
ATTGGCCTGATCCTGCACAGCACCAGCCAGAAGTTGCAGCAGCAGCTAAA
GGAGCAGGGAACCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGTAGCAGTA
GCAGCAGCAGTAGCAGCAGCAGTAGCACGCAGGCAGACACAAAAATGGCG
CCCAACGTGGGGCATAATGGCGCCCAACGTTGGCCGAATACGCTGCAGGA
ACTGGAGCAGCAGCAACAAAAACACGAGCAAAGCATGAGACTCCAGCCTG
TGGCAAACAATTTGGATTCGAGGAACGAGAATAACCATCGCCAACCCCAT
CCACAGTCGCAAAAAGTGCAAAATGCCAGCAAATCCCCTAACCAGCCAGA
AACAGTTATTTTAGCGGCCAGCAATGTGAATGAGAAGCAAATACTGGCAA
AAGCTTTCAAACGTGCCGATCGCAGTCGCGATGGCATTCTGTCAATCCAG
GAATTGGGGCAGTACATAAATCGCCGGATTGTGGAGCACATTGATGAGGC
GATTATGAACAATGCCCGCGAGTTCCGACGCGTGGATATTGGTCCTGCGG
ATGGTCTGATCACCTGGGACGAGTACCACCGCTTCTTCCTTAGGGAGCAC
GGCATGACAGAGGCGGACATCGATGAGCATGACGAGATTCGCCACACGGC
GCTGAACCGCAGGGCCAGGGAGGATATGATGAGGGACAAGGCCCGGTGGT
CGGAGGCAGCTCGAACCGATCTGTTCACACTGACCATCGATGAATACCTG
AGTTTCCGCCATCCCGAGTCCAGTGTATCCAATCTCTTGGAGCTGGTCGA
TGATCTGCTGCGCCAATTCGATCAGGATGGAGACGATCAGCTAACCCTGG
AGGAATTTTCCGATCTGAATGTGGATGATGACGATGATCTGATGCGAAAA
TCTCTGATATCGAAGACTTTGGTGGAGCGACGCGAGGAGTTCAAGCGGAT
CATCGATAAGAATCACGATGGCAAGGCGGATCGGGGTGAGCTACTGAACT
ATGTGAACCCCAAGACTCCGCGGTATGCCCTCCAGGAGGCGGCCACTTTG
TTCAGCCTGTGCGACGAGAACAAGGACGAGCTGCTGACCCTCAAAGAGAT
GACTGATCATGCCGAGATATTTCTGCAATCCAAGATGATCGATACGGCGA
ATAGTTTTCACACAGAGTTCGCAAGCTTTCTAGACCAT

BO10623.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31475-RB 1257 CG31475-PB 1..1254 17..1270 6270 100 Plus
CG31475-RA 1257 CG31475-PA 1..1254 17..1270 6270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG31475-RB 2448 CG31475-RB 948..2201 17..1270 6270 100 Plus
CG31475-RA 2688 CG31475-RA 1188..2441 17..1270 6270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19200021..19200706 513..1198 3430 100 Plus
3R 32079331 3R 19190080..19190576 17..513 2485 100 Plus
3R 32079331 3R 19200776..19200849 1197..1270 370 100 Plus
Blast to na_te.dros performed 2014-11-28 08:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6733..6968 117..356 295 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6855 185..330 173 63.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6865 199..346 132 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2616..2830 118..330 123 55.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6905 292..436 116 56.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6769 288..339 115 73.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6742..6916 292..474 111 59 Plus

BO10623.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:14 Download gff for BO10623.complete
Subject Subject Range Query Range Percent Splice Strand
CG31475-RA 1..1257 17..1271 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:01:12 Download gff for BO10623.complete
Subject Subject Range Query Range Percent Splice Strand
CG31475-RA 1186..2439 17..1272 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:39 Download gff for BO10623.complete
Subject Subject Range Query Range Percent Splice Strand
CG31475-RA 1188..2441 17..1272 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:15 Download gff for BO10623.complete
Subject Subject Range Query Range Percent Splice Strand
CG31475-RA 1179..2445 9..1278 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:59 Download gff for BO10623.complete
Subject Subject Range Query Range Percent Splice Strand
CG31475-RA 1188..2441 17..1272 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:59 Download gff for BO10623.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19190080..19190576 17..513 100 -> Plus
3R 19200022..19200706 514..1198 100 -> Plus
3R 19200778..19200849 1199..1272 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:39 Download gff for BO10623.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15015802..15016298 17..513 100 -> Plus
arm_3R 15025744..15026428 514..1198 100 -> Plus
arm_3R 15026500..15026571 1199..1272 97   Plus

BO10623.pep Sequence

Translation from 16 to 1288

> BO10623.pep
MTFVNKLSKSFRWLRCSTLCAILFYMFFIGLILHSTSQKLQQQLKEQGTS
SSSSSSSSSSSSSSSSSSSSTQADTKMAPNVGHNGAQRWPNTLQELEQQQ
QKHEQSMRLQPVANNLDSRNENNHRQPHPQSQKVQNASKSPNQPETVILA
ASNVNEKQILAKAFKRADRSRDGILSIQELGQYINRRIVEHIDEAIMNNA
REFRRVDIGPADGLITWDEYHRFFLREHGMTEADIDEHDEIRHTALNRRA
REDMMRDKARWSEAARTDLFTLTIDEYLSFRHPESSVSNLLELVDDLLRQ
FDQDGDDQLTLEEFSDLNVDDDDDLMRKSLISKTLVERREEFKRIIDKNH
DGKADRGELLNYVNPKTPRYALQEAATLFSLCDENKDELLTLKEMTDHAE
IFLQSKMIDTANSFHTEFASFLDH

BO10623.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG31475-PB 418 CG31475-PB 1..418 1..418 2143 100 Plus
CG31475-PA 418 CG31475-PA 1..418 1..418 2143 100 Plus
CG31650-PG 339 CG31650-PG 35..324 102..409 182 23.2 Plus
CG31650-PF 342 CG31650-PF 35..327 102..409 176 22.6 Plus
CG31650-PE 342 CG31650-PE 35..327 102..409 176 22.6 Plus