Clone BO10633 Report

Search the DGRC for BO10633

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:106
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG7708-RA
Protein status:BO10633.pep:
Sequenced Size:1876

Clone Sequence Records

BO10633.3prime Sequence

885 bp (818 high quality bases) assembled on 2006-04-19

> BO10633.3prime
ATGGTCTAGAAAGCTTGCGAAGGCCGTATTGTCCTGCTCCGCCGTGGGCA
TGGCCATCCCGCTTTGGCTCTGGAGGTGACCACCGCCTCCGCCCGACGGC
TTCACCCCAGTGGCGTTATCCAGCATCTTTTTGACCTGCGCCTGCGCCGT
CTCCTGGTTGATGCGACGTGCCTCCGCCACCGGCAGATCGTCGTCCGATT
CCAGGGCGGGATTGATGCGGCCATTGCGCTCATCCTTGCCCGCCATGGTG
GCCGCTCCGTAGGATCGGGCCAGCGGTCCAGCCATCACGGATAGCTGCTC
ACCCGACTCCGAGGGATCGCCCACACGCTGCACATCCTCCGGAATATTGA
CCACACAGCGGAAGTAGTCGTAGCTGGGCGGCAACTTGCCGGACTCAAAC
ATCATTTTAGTCCACCAGGAGACCGAGATGAGCGTGACCAGGCTGAGCAG
CATGGCCATGGTGCGGAAGGGGAACATCTGCTCCTTGGTCTCCTCGTCGT
AGCCGGGATACTTGATCAATGGAGCCAGTCCCAAGATGGCCTCACCGCCC
GACAGTCGGATGGCCAGGGCCACAATGTATGCCGACAGGCTGCCGTACGT
GTTGCAGTGCTTCTTGAAGTGCACCACCATCAGTAGCTGCGGGAACAGAA
TGACGTAGACCAGATCCGAGCACATGGACCACAAACCGTAGATGGAGGGA
ATGGTGAGGGCCATGATGGTAGCCAGGATGCCCACCACAATGATGGCGAC
TCGCATCACCCAAATGATTTCCATCTCGGACGCCTTCTGACGGAAAATCA
ATTTGTACACGTTCCGAGCGAACATGGAGGCGGCGGAGAGCACCGAGGAG
TCGGCGGAGGACATCACCGCGGGGGAAACAGCGCC

BO10633.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7708-PA 1845 CG7708-RA 976..1842 885..19 4285 99.7 Minus
CG7708-PB 1845 CG7708-RB 976..1842 885..19 4285 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7708-RB 4748 CG7708-RB 1802..2668 885..19 4305 99.8 Minus
CG7708-RA 3299 CG7708-RA 1802..2668 885..19 4305 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18684272..18684659 406..19 1940 100 Minus
3R 32079331 3R 18683902..18684175 680..407 1370 100 Minus
3R 32079331 3R 18683620..18683827 885..678 1010 99 Minus
Blast to na_te.dros performed on 2015-02-06 17:15:01 has no hits.

BO10633.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:44:44 Download gff for BO10633.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7708-PA 976..1845 16..885 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:00:09 Download gff for BO10633.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7708-PB 976..1845 16..885 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:30:47 Download gff for BO10633.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7708-RA 1800..2671 13..885 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:27:31 Download gff for BO10633.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7708-RA 1802..2673 13..885 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:27:31 Download gff for BO10633.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18683620..18683825 680..885 99 -> Minus
3R 18683903..18684175 407..679 100 -> Minus
3R 18684272..18684664 13..406 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:30:47 Download gff for BO10633.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14509342..14509547 680..885 99 -> Minus
arm_3R 14509625..14509897 407..679 100 -> Minus
arm_3R 14509994..14510386 13..406 99   Minus

BO10633.5prime Sequence

770 bp (769 high quality bases) assembled on 2006-04-19

> BO10633.5prime
GAAGTTATCAGTCGACATGATCAATATCGCTGGCGTGGTGAGCATCGTGC
TCTTCTACCTCCTGATCCTGGTCGTTGGCATTTGGGCCGGTCGCAAGAAG
CAGTCCGGCAATGATTCGGAGGAGGAGGTCATGCTGGCCGGACGCTCCAT
CGGCCTCTTCGTGGGCATCTTCACCATGACGGCCACCTGGGTGGGTGGCG
GCTACATCAACGGCACGGCGGAGGCTATATACACATCGGGTCTGGTGTGG
TGCCAGGCTCCATTTGGATACGCTCTAAGCTTGGTATTTGGTGGCATCTT
CTTTGCCAATCCCATGCGCAAGCAGGGTTACATCACCATGTTGGATCCGT
TGCAGGATTCCTTTGGTGAGCGGATGGGAGGATTGCTCTTCCTGCCCGCT
CTATGCGGTGAGGTCTTTTGGGCAGCCGGCATCCTGGCTGCACTTGGCGC
CACTCTATCGGTGATCATCGACATGGATCACCGCACCTCGGTGATCCTGT
CCTCCTGCATCGCCATCTTCTACACACTGTTCGGTGGACTGTACTCCGTG
GCGTATACGGACGTGATCCAGTTGTTCTGCATCTTCATCGGTCTGTGGAT
GTGCATTCCCTTCGCCTGGAGCAACGAGCACGTGGGCAGCCTGAGTGACC
TGGAGGTGGATTGGATTGGGCACGTGGAGCCTAAAAAGCATTGGCTGTAC
ATAGACTACGGCTTGCTGCTCGTCTTTGGTGGCATTCCCTGGCAGGTCTA
CTTCCAGCGGGTGCTGTCCA

BO10633.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7708-PA 1845 CG7708-RA 1..754 17..770 3770 100 Plus
CG7708-PB 1845 CG7708-RB 1..754 17..770 3770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7708-RB 4748 CG7708-RB 827..1580 17..770 3770 100 Plus
CG7708-RA 3299 CG7708-RA 827..1580 17..770 3770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18682788..18683268 290..770 2405 100 Plus
3R 32079331 3R 18682440..18682715 17..292 1380 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:42:41 has no hits.

BO10633.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:44:45 Download gff for BO10633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7708-PA 1..753 17..769 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:00:10 Download gff for BO10633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7708-PB 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:53:44 Download gff for BO10633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7708-RA 822..1577 10..769 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:54:58 Download gff for BO10633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7708-RA 824..1579 10..769 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:54:58 Download gff for BO10633.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18682437..18682713 10..290 98 -> Plus
3R 18682789..18683267 291..769 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:53:44 Download gff for BO10633.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14508159..14508435 10..290 98 -> Plus
arm_3R 14508511..14508989 291..769 100   Plus

BO10633.complete Sequence

1876 bp assembled on 2008-01-16

GenBank Submission: FJ631822

> BO10633.complete
GAAGTTATCAGTCGACATGATCAATATCGCTGGCGTGGTGAGCATCGTGC
TCTTCTACCTCCTGATCCTGGTCGTTGGCATTTGGGCCGGTCGCAAGAAG
CAGTCCGGCAATGATTCGGAGGAGGAGGTCATGCTGGCCGGACGCTCCAT
CGGCCTCTTCGTGGGCATCTTCACCATGACGGCCACCTGGGTGGGTGGCG
GCTACATCAACGGCACGGCGGAGGCTATATACACATCGGGTCTGGTGTGG
TGCCAGGCTCCATTTGGATACGCTCTAAGCTTGGTATTTGGTGGCATCTT
CTTTGCCAATCCCATGCGCAAGCAGGGTTACATCACCATGTTGGATCCGT
TGCAGGATTCCTTTGGTGAGCGGATGGGAGGATTGCTCTTCCTGCCCGCT
CTATGCGGTGAGGTCTTTTGGGCAGCCGGCATCCTGGCTGCACTTGGCGC
CACTCTATCGGTGATCATCGACATGGATCACCGCACCTCGGTGATCCTGT
CCTCCTGCATCGCCATCTTCTACACACTGTTCGGTGGACTGTACTCCGTG
GCGTATACGGACGTGATCCAGTTGTTCTGCATCTTCATCGGTCTGTGGAT
GTGCATTCCCTTCGCCTGGAGCAACGAGCACGTGGGCAGCCTGAGTGACC
TGGAGGTGGATTGGATTGGGCACGTGGAGCCTAAAAAGCATTGGCTGTAC
ATAGACTACGGCTTGCTGCTCGTCTTTGGTGGCATTCCCTGGCAGGTCTA
CTTCCAGCGGGTGCTGTCCAGCAAAACGGCAGGAAGGGCCCAGCTTCTGT
CCTATGTTGCAGCCGCCGGATGCATTTTGATGGCCATTCCCCCGGTGCTC
ATCGGAGCGATTGCCAAGGCTACACCTTGGAACGAGACAGATTACAAGGG
ACCCTATCCCCTGACCGTGGACGAGACGAGCATGATTCTGCCCATGGTGC
TGCAGTACCTCACGCCTGACTTCGTGTCCTTCTTTGGATTGGGCGCTGTT
TCCGCCGCCGTGATGTCCTCCGCCGACTCCTCGGTGCTCTCCGCCGCCTC
CATGTTCGCTCGGAACGTGTACAAATTGATTTTCCGTCAGAAGGCGTCCG
AGATGGAAATCATTTGGGTGATGCGAGTCGCCATCATTGTGGTGGGCATC
CTGGCTACCATCATGGCCCTCACCATTCCCTCCATCTACGGTTTGTGGTC
CATGTGCTCGGATCTGGTCTACGTCATTCTGTTCCCGCAGCTACTGATGG
TGGTGCACTTCAAGAAGCACTGCAACACGTACGGCAGCCTGTCGGCATAC
ATTGTGGCCCTGGCCATCCGACTGTCGGGCGGTGAGGCCATCTTGGGACT
GGCTCCATTGATCAAGTATCCCGGCTACGACGAGGAGACCAAGGAGCAGA
TGTTCCCCTTCCGCACCATGGCCATGCTGCTCAGCCTGGTCACGCTCATC
TCGGTCTCCTGGTGGACTAAAATGATGTTTGAGTCCGGCAAGTTGCCGCC
CAGCTACGACTACTTCCGCTGTGTGGTCAATATTCCGGAGGATGTGCAGC
GTGTGGGCGATCCCTCGGAGTCGGGTGAGCAGCTATCCGTGATGGCTGGA
CCGCTGGCCCGATCCTACGGAGCGGCCACCATGGCGGGCAAGGATGAGCG
CAATGGCCGCATCAATCCCGCCCTGGAATCGGACGACGATCTGCCGGTGG
CGGAGGCACGTCGCATCAACCAGGAGACGGCGCAGGCGCAGGTCAAAAAG
ATGCTGGATAACGCCACTGGGGTGAAGCCGTCGGGCGGAGGCGGTGGTCA
CCTCCAGAGCCAAAGCGGGATGGCCATGCCCACGGCGGAGCAGGACAATA
CGGCCTTCGCAAGCTTTCTAGACCAT

BO10633.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7708-RB 1845 CG7708-PB 1..1842 17..1858 9210 100 Plus
CG7708-RA 1845 CG7708-PA 1..1842 17..1858 9210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7708-RB 4748 CG7708-RB 827..2668 17..1858 9210 100 Plus
CG7708-RA 3299 CG7708-RA 827..2668 17..1858 9210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18682788..18683373 290..875 2930 100 Plus
3R 32079331 3R 18684272..18684659 1471..1858 1940 100 Plus
3R 32079331 3R 18683500..18683827 872..1199 1625 99.7 Plus
3R 32079331 3R 18682440..18682715 17..292 1380 100 Plus
3R 32079331 3R 18683902..18684175 1197..1470 1370 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:35:48 has no hits.

BO10633.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:19 Download gff for BO10633.complete
Subject Subject Range Query Range Percent Splice Strand
CG7708-RB 1..1845 17..1861 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:03 Download gff for BO10633.complete
Subject Subject Range Query Range Percent Splice Strand
CG7708-RB 1304..3145 17..1860 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:24 Download gff for BO10633.complete
Subject Subject Range Query Range Percent Splice Strand
CG7708-RA 825..2666 17..1860 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:56:19 Download gff for BO10633.complete
Subject Subject Range Query Range Percent Splice Strand
CG7708-RB 1301..3150 10..1864 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:12 Download gff for BO10633.complete
Subject Subject Range Query Range Percent Splice Strand
CG7708-RA 827..2668 17..1860 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:12 Download gff for BO10633.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18682440..18682713 17..290 100 -> Plus
3R 18682789..18683373 291..875 100 -> Plus
3R 18683504..18683825 876..1197 100 -> Plus
3R 18683903..18684175 1198..1470 100 -> Plus
3R 18684272..18684659 1471..1860 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:24 Download gff for BO10633.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14508162..14508435 17..290 100 -> Plus
arm_3R 14508511..14509095 291..875 100 -> Plus
arm_3R 14509226..14509547 876..1197 100 -> Plus
arm_3R 14509625..14509897 1198..1470 100 -> Plus
arm_3R 14509994..14510381 1471..1860 99   Plus

BO10633.pep Sequence

Translation from 16 to 1876

> BO10633.pep
MINIAGVVSIVLFYLLILVVGIWAGRKKQSGNDSEEEVMLAGRSIGLFVG
IFTMTATWVGGGYINGTAEAIYTSGLVWCQAPFGYALSLVFGGIFFANPM
RKQGYITMLDPLQDSFGERMGGLLFLPALCGEVFWAAGILAALGATLSVI
IDMDHRTSVILSSCIAIFYTLFGGLYSVAYTDVIQLFCIFIGLWMCIPFA
WSNEHVGSLSDLEVDWIGHVEPKKHWLYIDYGLLLVFGGIPWQVYFQRVL
SSKTAGRAQLLSYVAAAGCILMAIPPVLIGAIAKATPWNETDYKGPYPLT
VDETSMILPMVLQYLTPDFVSFFGLGAVSAAVMSSADSSVLSAASMFARN
VYKLIFRQKASEMEIIWVMRVAIIVVGILATIMALTIPSIYGLWSMCSDL
VYVILFPQLLMVVHFKKHCNTYGSLSAYIVALAIRLSGGEAILGLAPLIK
YPGYDEETKEQMFPFRTMAMLLSLVTLISVSWWTKMMFESGKLPPSYDYF
RCVVNIPEDVQRVGDPSESGEQLSVMAGPLARSYGAATMAGKDERNGRIN
PALESDDDLPVAEARRINQETAQAQVKKMLDNATGVKPSGGGGGHLQSQS
GMAMPTAEQDNTAFASFLDH

BO10633.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7708-PB 614 CG7708-PB 1..614 1..614 3175 100 Plus
CG7708-PA 614 CG7708-PA 1..614 1..614 3175 100 Plus
CG6723-PA 587 CG6723-PA 20..407 8..387 198 22.9 Plus
CG10444-PA 587 CG10444-PA 12..453 5..434 168 19.4 Plus