Clone Sequence Records
BO10633.3prime Sequence
885 bp (818 high quality bases) assembled on 2006-04-19
> BO10633.3prime
ATGGTCTAGAAAGCTTGCGAAGGCCGTATTGTCCTGCTCCGCCGTGGGCA
TGGCCATCCCGCTTTGGCTCTGGAGGTGACCACCGCCTCCGCCCGACGGC
TTCACCCCAGTGGCGTTATCCAGCATCTTTTTGACCTGCGCCTGCGCCGT
CTCCTGGTTGATGCGACGTGCCTCCGCCACCGGCAGATCGTCGTCCGATT
CCAGGGCGGGATTGATGCGGCCATTGCGCTCATCCTTGCCCGCCATGGTG
GCCGCTCCGTAGGATCGGGCCAGCGGTCCAGCCATCACGGATAGCTGCTC
ACCCGACTCCGAGGGATCGCCCACACGCTGCACATCCTCCGGAATATTGA
CCACACAGCGGAAGTAGTCGTAGCTGGGCGGCAACTTGCCGGACTCAAAC
ATCATTTTAGTCCACCAGGAGACCGAGATGAGCGTGACCAGGCTGAGCAG
CATGGCCATGGTGCGGAAGGGGAACATCTGCTCCTTGGTCTCCTCGTCGT
AGCCGGGATACTTGATCAATGGAGCCAGTCCCAAGATGGCCTCACCGCCC
GACAGTCGGATGGCCAGGGCCACAATGTATGCCGACAGGCTGCCGTACGT
GTTGCAGTGCTTCTTGAAGTGCACCACCATCAGTAGCTGCGGGAACAGAA
TGACGTAGACCAGATCCGAGCACATGGACCACAAACCGTAGATGGAGGGA
ATGGTGAGGGCCATGATGGTAGCCAGGATGCCCACCACAATGATGGCGAC
TCGCATCACCCAAATGATTTCCATCTCGGACGCCTTCTGACGGAAAATCA
ATTTGTACACGTTCCGAGCGAACATGGAGGCGGCGGAGAGCACCGAGGAG
TCGGCGGAGGACATCACCGCGGGGGAAACAGCGCC
BO10633.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7708-PA | 1845 | CG7708-RA | 976..1842 | 885..19 | 4285 | 99.7 | Minus |
CG7708-PB | 1845 | CG7708-RB | 976..1842 | 885..19 | 4285 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:15:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7708-RB | 4748 | CG7708-RB | 1802..2668 | 885..19 | 4305 | 99.8 | Minus |
CG7708-RA | 3299 | CG7708-RA | 1802..2668 | 885..19 | 4305 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:14:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18684272..18684659 | 406..19 | 1940 | 100 | Minus |
3R | 32079331 | 3R | 18683902..18684175 | 680..407 | 1370 | 100 | Minus |
3R | 32079331 | 3R | 18683620..18683827 | 885..678 | 1010 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-06 17:15:01 has no hits.
BO10633.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:44:44 Download gff for
BO10633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7708-PA | 976..1845 | 16..885 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:00:09 Download gff for
BO10633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7708-PB | 976..1845 | 16..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:30:47 Download gff for
BO10633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7708-RA | 1800..2671 | 13..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:27:31 Download gff for
BO10633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7708-RA | 1802..2673 | 13..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:27:31 Download gff for
BO10633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18683620..18683825 | 680..885 | 99 | -> | Minus |
3R | 18683903..18684175 | 407..679 | 100 | -> | Minus |
3R | 18684272..18684664 | 13..406 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:30:47 Download gff for
BO10633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14509342..14509547 | 680..885 | 99 | -> | Minus |
arm_3R | 14509625..14509897 | 407..679 | 100 | -> | Minus |
arm_3R | 14509994..14510386 | 13..406 | 99 | | Minus |
BO10633.5prime Sequence
770 bp (769 high quality bases) assembled on 2006-04-19
> BO10633.5prime
GAAGTTATCAGTCGACATGATCAATATCGCTGGCGTGGTGAGCATCGTGC
TCTTCTACCTCCTGATCCTGGTCGTTGGCATTTGGGCCGGTCGCAAGAAG
CAGTCCGGCAATGATTCGGAGGAGGAGGTCATGCTGGCCGGACGCTCCAT
CGGCCTCTTCGTGGGCATCTTCACCATGACGGCCACCTGGGTGGGTGGCG
GCTACATCAACGGCACGGCGGAGGCTATATACACATCGGGTCTGGTGTGG
TGCCAGGCTCCATTTGGATACGCTCTAAGCTTGGTATTTGGTGGCATCTT
CTTTGCCAATCCCATGCGCAAGCAGGGTTACATCACCATGTTGGATCCGT
TGCAGGATTCCTTTGGTGAGCGGATGGGAGGATTGCTCTTCCTGCCCGCT
CTATGCGGTGAGGTCTTTTGGGCAGCCGGCATCCTGGCTGCACTTGGCGC
CACTCTATCGGTGATCATCGACATGGATCACCGCACCTCGGTGATCCTGT
CCTCCTGCATCGCCATCTTCTACACACTGTTCGGTGGACTGTACTCCGTG
GCGTATACGGACGTGATCCAGTTGTTCTGCATCTTCATCGGTCTGTGGAT
GTGCATTCCCTTCGCCTGGAGCAACGAGCACGTGGGCAGCCTGAGTGACC
TGGAGGTGGATTGGATTGGGCACGTGGAGCCTAAAAAGCATTGGCTGTAC
ATAGACTACGGCTTGCTGCTCGTCTTTGGTGGCATTCCCTGGCAGGTCTA
CTTCCAGCGGGTGCTGTCCA
BO10633.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7708-PA | 1845 | CG7708-RA | 1..754 | 17..770 | 3770 | 100 | Plus |
CG7708-PB | 1845 | CG7708-RB | 1..754 | 17..770 | 3770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:42:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7708-RB | 4748 | CG7708-RB | 827..1580 | 17..770 | 3770 | 100 | Plus |
CG7708-RA | 3299 | CG7708-RA | 827..1580 | 17..770 | 3770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:42:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18682788..18683268 | 290..770 | 2405 | 100 | Plus |
3R | 32079331 | 3R | 18682440..18682715 | 17..292 | 1380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:42:41 has no hits.
BO10633.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:44:45 Download gff for
BO10633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7708-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:00:10 Download gff for
BO10633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7708-PB | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:53:44 Download gff for
BO10633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7708-RA | 822..1577 | 10..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:54:58 Download gff for
BO10633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7708-RA | 824..1579 | 10..769 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:54:58 Download gff for
BO10633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18682437..18682713 | 10..290 | 98 | -> | Plus |
3R | 18682789..18683267 | 291..769 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:53:44 Download gff for
BO10633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14508159..14508435 | 10..290 | 98 | -> | Plus |
arm_3R | 14508511..14508989 | 291..769 | 100 | | Plus |
BO10633.complete Sequence
1876 bp assembled on 2008-01-16
GenBank Submission: FJ631822
> BO10633.complete
GAAGTTATCAGTCGACATGATCAATATCGCTGGCGTGGTGAGCATCGTGC
TCTTCTACCTCCTGATCCTGGTCGTTGGCATTTGGGCCGGTCGCAAGAAG
CAGTCCGGCAATGATTCGGAGGAGGAGGTCATGCTGGCCGGACGCTCCAT
CGGCCTCTTCGTGGGCATCTTCACCATGACGGCCACCTGGGTGGGTGGCG
GCTACATCAACGGCACGGCGGAGGCTATATACACATCGGGTCTGGTGTGG
TGCCAGGCTCCATTTGGATACGCTCTAAGCTTGGTATTTGGTGGCATCTT
CTTTGCCAATCCCATGCGCAAGCAGGGTTACATCACCATGTTGGATCCGT
TGCAGGATTCCTTTGGTGAGCGGATGGGAGGATTGCTCTTCCTGCCCGCT
CTATGCGGTGAGGTCTTTTGGGCAGCCGGCATCCTGGCTGCACTTGGCGC
CACTCTATCGGTGATCATCGACATGGATCACCGCACCTCGGTGATCCTGT
CCTCCTGCATCGCCATCTTCTACACACTGTTCGGTGGACTGTACTCCGTG
GCGTATACGGACGTGATCCAGTTGTTCTGCATCTTCATCGGTCTGTGGAT
GTGCATTCCCTTCGCCTGGAGCAACGAGCACGTGGGCAGCCTGAGTGACC
TGGAGGTGGATTGGATTGGGCACGTGGAGCCTAAAAAGCATTGGCTGTAC
ATAGACTACGGCTTGCTGCTCGTCTTTGGTGGCATTCCCTGGCAGGTCTA
CTTCCAGCGGGTGCTGTCCAGCAAAACGGCAGGAAGGGCCCAGCTTCTGT
CCTATGTTGCAGCCGCCGGATGCATTTTGATGGCCATTCCCCCGGTGCTC
ATCGGAGCGATTGCCAAGGCTACACCTTGGAACGAGACAGATTACAAGGG
ACCCTATCCCCTGACCGTGGACGAGACGAGCATGATTCTGCCCATGGTGC
TGCAGTACCTCACGCCTGACTTCGTGTCCTTCTTTGGATTGGGCGCTGTT
TCCGCCGCCGTGATGTCCTCCGCCGACTCCTCGGTGCTCTCCGCCGCCTC
CATGTTCGCTCGGAACGTGTACAAATTGATTTTCCGTCAGAAGGCGTCCG
AGATGGAAATCATTTGGGTGATGCGAGTCGCCATCATTGTGGTGGGCATC
CTGGCTACCATCATGGCCCTCACCATTCCCTCCATCTACGGTTTGTGGTC
CATGTGCTCGGATCTGGTCTACGTCATTCTGTTCCCGCAGCTACTGATGG
TGGTGCACTTCAAGAAGCACTGCAACACGTACGGCAGCCTGTCGGCATAC
ATTGTGGCCCTGGCCATCCGACTGTCGGGCGGTGAGGCCATCTTGGGACT
GGCTCCATTGATCAAGTATCCCGGCTACGACGAGGAGACCAAGGAGCAGA
TGTTCCCCTTCCGCACCATGGCCATGCTGCTCAGCCTGGTCACGCTCATC
TCGGTCTCCTGGTGGACTAAAATGATGTTTGAGTCCGGCAAGTTGCCGCC
CAGCTACGACTACTTCCGCTGTGTGGTCAATATTCCGGAGGATGTGCAGC
GTGTGGGCGATCCCTCGGAGTCGGGTGAGCAGCTATCCGTGATGGCTGGA
CCGCTGGCCCGATCCTACGGAGCGGCCACCATGGCGGGCAAGGATGAGCG
CAATGGCCGCATCAATCCCGCCCTGGAATCGGACGACGATCTGCCGGTGG
CGGAGGCACGTCGCATCAACCAGGAGACGGCGCAGGCGCAGGTCAAAAAG
ATGCTGGATAACGCCACTGGGGTGAAGCCGTCGGGCGGAGGCGGTGGTCA
CCTCCAGAGCCAAAGCGGGATGGCCATGCCCACGGCGGAGCAGGACAATA
CGGCCTTCGCAAGCTTTCTAGACCAT
BO10633.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:35:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7708-RB | 1845 | CG7708-PB | 1..1842 | 17..1858 | 9210 | 100 | Plus |
CG7708-RA | 1845 | CG7708-PA | 1..1842 | 17..1858 | 9210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:35:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7708-RB | 4748 | CG7708-RB | 827..2668 | 17..1858 | 9210 | 100 | Plus |
CG7708-RA | 3299 | CG7708-RA | 827..2668 | 17..1858 | 9210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:35:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18682788..18683373 | 290..875 | 2930 | 100 | Plus |
3R | 32079331 | 3R | 18684272..18684659 | 1471..1858 | 1940 | 100 | Plus |
3R | 32079331 | 3R | 18683500..18683827 | 872..1199 | 1625 | 99.7 | Plus |
3R | 32079331 | 3R | 18682440..18682715 | 17..292 | 1380 | 100 | Plus |
3R | 32079331 | 3R | 18683902..18684175 | 1197..1470 | 1370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:35:48 has no hits.
BO10633.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:19 Download gff for
BO10633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7708-RB | 1..1845 | 17..1861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:03 Download gff for
BO10633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7708-RB | 1304..3145 | 17..1860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:24 Download gff for
BO10633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7708-RA | 825..2666 | 17..1860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:56:19 Download gff for
BO10633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7708-RB | 1301..3150 | 10..1864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:12 Download gff for
BO10633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7708-RA | 827..2668 | 17..1860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:12 Download gff for
BO10633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18682440..18682713 | 17..290 | 100 | -> | Plus |
3R | 18682789..18683373 | 291..875 | 100 | -> | Plus |
3R | 18683504..18683825 | 876..1197 | 100 | -> | Plus |
3R | 18683903..18684175 | 1198..1470 | 100 | -> | Plus |
3R | 18684272..18684659 | 1471..1860 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:24 Download gff for
BO10633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14508162..14508435 | 17..290 | 100 | -> | Plus |
arm_3R | 14508511..14509095 | 291..875 | 100 | -> | Plus |
arm_3R | 14509226..14509547 | 876..1197 | 100 | -> | Plus |
arm_3R | 14509625..14509897 | 1198..1470 | 100 | -> | Plus |
arm_3R | 14509994..14510381 | 1471..1860 | 99 | | Plus |
BO10633.pep Sequence
Translation from 16 to 1876
> BO10633.pep
MINIAGVVSIVLFYLLILVVGIWAGRKKQSGNDSEEEVMLAGRSIGLFVG
IFTMTATWVGGGYINGTAEAIYTSGLVWCQAPFGYALSLVFGGIFFANPM
RKQGYITMLDPLQDSFGERMGGLLFLPALCGEVFWAAGILAALGATLSVI
IDMDHRTSVILSSCIAIFYTLFGGLYSVAYTDVIQLFCIFIGLWMCIPFA
WSNEHVGSLSDLEVDWIGHVEPKKHWLYIDYGLLLVFGGIPWQVYFQRVL
SSKTAGRAQLLSYVAAAGCILMAIPPVLIGAIAKATPWNETDYKGPYPLT
VDETSMILPMVLQYLTPDFVSFFGLGAVSAAVMSSADSSVLSAASMFARN
VYKLIFRQKASEMEIIWVMRVAIIVVGILATIMALTIPSIYGLWSMCSDL
VYVILFPQLLMVVHFKKHCNTYGSLSAYIVALAIRLSGGEAILGLAPLIK
YPGYDEETKEQMFPFRTMAMLLSLVTLISVSWWTKMMFESGKLPPSYDYF
RCVVNIPEDVQRVGDPSESGEQLSVMAGPLARSYGAATMAGKDERNGRIN
PALESDDDLPVAEARRINQETAQAQVKKMLDNATGVKPSGGGGGHLQSQS
GMAMPTAEQDNTAFASFLDH
BO10633.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7708-PB | 614 | CG7708-PB | 1..614 | 1..614 | 3175 | 100 | Plus |
CG7708-PA | 614 | CG7708-PA | 1..614 | 1..614 | 3175 | 100 | Plus |
CG6723-PA | 587 | CG6723-PA | 20..407 | 8..387 | 198 | 22.9 | Plus |
CG10444-PA | 587 | CG10444-PA | 12..453 | 5..434 | 168 | 19.4 | Plus |