Clone Sequence Records
BO10634.complete Sequence
2251 bp assembled on 2009-10-20
GenBank Submission: KX795535
> BO10634.complete
GAAGTTATCAGTCGACATGTCCAGCGAGTCCTCCACCGAAGGCGACAGCG
ATCTATACGATCCTTTGGCCGAGGAGCTGCACAACGTCCAGTTGGTCAAA
CATGTGACCCGCGAGAATATTGATGCCCTGAATGCCAAGTTTGCCAACCT
GCAGGAGCCACCAGCCATGTACTTAATAGAATACCAGGAGTTGACCTCCA
AGCTCCACGAACTGGAGGCCAAGGAGCAGGAACTAATGGAGCGACTGAAC
TCGCAGGACCAGCAGGAGGACTCCTCCTTGGTCGAGCGGTTCAAGGAGCA
GCCCCACTATCAAAATCAAACTCAAATCCTGCAGCAACAACGGCAATTGG
CGCGAGTGCACCACGGCAACGATCTAACCGATAGCTTGGGCTCTCAGCCG
GGCAGCCAATGTGGAACTTTGACCCGTCAGCCCAAGATCCTTTTGCGAGC
CCACCTGCCCAATCAACAGCGCACTTCAGTGGAGGTAATTTCGGGAGTAC
GACTATGTGATGCCCTCATGAAGGCCCTGAAACTCCGGCAACTAACGCCG
GATATGTGCGAAGTAAGCACAACTCATTCCGGAAGACATATCATACCCTG
GCACACGGATATCGGCACTCTGCATGTGGAGGAGATCTTTGTCAGGCTGC
TGGATAAGTTTCCCATTAGGACACACATCAAGCACCAGATCATACGGAAG
ACCTTCTTCTCGTTGGTATTCTGCGAGGGCTGTCGAAGGCTTCTGTTCAC
CGGGTTCTACTGTAGCCAGTGTAATTTTCGATTCCATCAGAGGTGTGCCA
ATAGAGTGCCGATGCTGTGCCAGCCCTTTCCCATGGATAGCTACTATCAG
CTACTGCTGGCCGAGAATCCGGATAATGGCGTTGGTTTCCCCGGCAGAGG
CACTGCTGTCCGCTTCAATATGAGCAGCCGGAGTCGCAGTCGTCGTTGCA
GCAGCAGTGGCAGCAGCAGCAGCTCGAAGCCACCATCTTCATCCTCCGGC
AATCATCGACAGGGTCGTCCGCCGAGGATCAGCCAAGACGATCGATCCAA
TTCCGCGCCAAATGTGTGCATCAACAACATTCGATCGGTCACAAGCGAAG
TGCAGCGCAGTTTGATAATGCAGGCCAGACCTCCTTTGCCGCATCCGTGC
ACAGATCACTCCAACTCCACGCAAGCGTCGCCCACGAGCACCTTGAAACA
CAATCGTCCCAGGGCCAGGTCCGCCGATGAGAGCAATAAAAATCTGCTTT
TAAGAGACGCCAAAAGTTCCGAGGAAAACTGGAATATTCTGGCGGAGGAG
ATTTTAATTGGGCCGCGCATCGGATCGGGTTCCTTTGGAACCGTTTATCG
CGCCCATTGGCACGGTCCCGTGGCCGTAAAGACACTCAACGTGAAGACAC
CGAGTCCCGCCCAGTTGCAGGCGTTTAAGAACGAGGTGGCCATGCTGAAA
AAGACGCGCCACTGCAATATCCTCCTCTTCATGGGCTGTGTATCCAAACC
ATCTCTAGCGATTGTGACCCAGTGGTGCGAGGGCAGCAGTCTCTACAAGC
ACGTCCATGTCAGCGAAACCAAGTTTAAATTGAACACGCTCATCGATATC
GGACGTCAGGTGGCCCAGGGCATGGATTACCTGCATGCCAAGAATATCAT
TCATAGAGACCTCAAGTCAAACAACATCTTTTTGCACGAGGATCTTTCCG
TGAAGATAGGCGACTTCGGATTGGCCACTGCGAAAACTCGATGGTCGGGT
GAAAAGCAAGCCAATCAACCCACGGGCAGTATTTTATGGATGGCTCCAGA
GGTGATTCGCATGCAGGAGCTAAACCCCTACTCCTTCCAGTCGGACGTTT
ATGCCTTTGGTATCGTGATGTACGAACTGTTGGCGGAGTGCTTGCCCTAC
GGTCATATTAGCAACAAGGATCAGATCCTGTTTATGGTGGGGCGAGGACT
TCTGCGTCCGGACATGAGTCAAGTGCGCTCGGATGCGCCGCAGGCATTGA
AGCGCTTGGCCGAGGATTGCATTAAGTATACCCCCAAGGATCGACCGCTC
TTTAGGCCGCTGCTCAATATGCTGGAGAACATGCTGCGCACTTTGCCCAA
AATTCATCGCAGTGCCAGTGAACCAAACTTGACGCAATCGCAGCTGCAGA
ACGATGAGTTTCTGTATCTGCCCAGCCCGAAAACGCCGGTGAACTTCAAC
AACTTTCAGTTCTTCGGCAGCGCTGGGAATATCGCAAGCTTTCTAGACCA
T
BO10634.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:31:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phl-RE | 2220 | CG2845-PE | 1..2217 | 17..2233 | 11085 | 100 | Plus |
| phl-RA | 2220 | CG2845-PA | 1..2217 | 17..2233 | 11085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:31:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phl-RE | 4247 | CG2845-RE | 1588..3805 | 16..2233 | 11090 | 100 | Plus |
| phl-RA | 3247 | CG2845-RA | 588..2805 | 16..2233 | 11090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:31:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2341176..2342139 | 178..1141 | 4820 | 100 | Plus |
| X | 23542271 | X | 2342849..2343428 | 1654..2233 | 2900 | 100 | Plus |
| X | 23542271 | X | 2342412..2342786 | 1282..1656 | 1875 | 100 | Plus |
| X | 23542271 | X | 2340885..2341048 | 16..179 | 820 | 100 | Plus |
| X | 23542271 | X | 2342203..2342344 | 1141..1282 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:31:45 has no hits.
BO10634.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-20 10:49:40 Download gff for
BO10634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phl-RC | 431..2647 | 17..2235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:23 Download gff for
BO10634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phl-RA | 761..2977 | 17..2235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:08 Download gff for
BO10634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phl-RA | 589..2805 | 17..2235 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:08 Download gff for
BO10634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2340886..2341048 | 17..179 | 100 | -> | Plus |
| X | 2341178..2342139 | 180..1141 | 100 | -> | Plus |
| X | 2342204..2342344 | 1142..1282 | 100 | -> | Plus |
| X | 2342413..2342786 | 1283..1656 | 100 | -> | Plus |
| X | 2342852..2343428 | 1657..2235 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:23 Download gff for
BO10634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2234919..2235081 | 17..179 | 100 | -> | Plus |
| arm_X | 2236237..2236377 | 1142..1282 | 100 | -> | Plus |
| arm_X | 2235211..2236172 | 180..1141 | 100 | -> | Plus |
| arm_X | 2236446..2236819 | 1283..1656 | 100 | -> | Plus |
| arm_X | 2236885..2237461 | 1657..2235 | 99 | | Plus |
BO10634.3prime Sequence
883 bp (823 high quality bases) assembled on 2006-04-19
> BO10634.3prime
ATGGTCTAGAAAGCTTGCGATATTCCCAGCGCTGCCGAAGAACTGAAAGT
TGTTGAAGTTCACCGGCGTTTTCGGGCTGGGCAGATACAGAAACTCATCG
TTCTGCAGCTGCGATTGCGTCAAGTTTGGTTCACTGGCACTGCGATGAAT
TTTGGGCAAAGTGCGCAGCATGTTCTCCAGCATATTGAGCAGCGGCCTAA
AGAGCGGTCGATCCTTGGGGGTATACTTAATGCAATCCTCGGCCAAGCGC
TTCAATGCCTGCGGCGCATCCGAGCGCACTTGACTCATGTCCGGACGCAG
AAGTCCTCGCCCCACCATAAACAGGATCTGATCCTTGTTGCTAATATGAC
CGTAGGGCAAGCACTCCGCCAACAGTTCGTACATCACGATACCAAAGGCA
TAAACGTCCGACTGGAAGGAGTAGGGGTTTAGCTCCTGCATGCGAATCAC
CTCTGGAGCCATCCATAAAATACTGCCCGTGGGTTGATTGGCTTGCTTTT
CACCCGACCATCGAGTTTTCGCAGTGGCCAATCCGAAGTCGCCTATCTTC
ACGGAAAGATCCTCGTGCAAAAAGATGTTGTTTGACTTGAGGTCTCTATG
AATGATATTCTTGGCATGCAGGTAATCCATGCCCTGGGCCACCTGACGTC
CGATATCGATGAGCGTGTTCAATTTAAACTTGGTTTCGCTGACATGGACG
TGCTTGTAGAGACTGCTGCCCTCGCACCACTGGGTCACAATCGCTAGAGA
TGGTTTGGATACACAGCCCATGAAGAGGAGGATATTGCAGTGGCGCGTCT
TTTTCAGCATGGCCACCTCGTTCTTTAACGCCTGCAACTGGGCGGGACTC
GGTGTCTTCACGTTGAGTGTCTTTACGGCCACG
BO10634.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2845-PB | 2349 | phl-RB | 1482..2346 | 883..19 | 4300 | 99.8 | Minus |
| CG2845-PA | 2220 | phl-RA | 1353..2217 | 883..19 | 4300 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:24:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phl-RE | 4247 | CG2845-RE | 2941..3805 | 883..19 | 4310 | 99.9 | Minus |
| phl-RA | 3247 | CG2845-RA | 1941..2805 | 883..19 | 4310 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:24:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2342849..2343428 | 598..19 | 2900 | 100 | Minus |
| X | 23542271 | X | 2342499..2342786 | 883..596 | 1425 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-09 02:24:49 has no hits.
BO10634.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:44:46 Download gff for
BO10634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phl-PA | 1353..2220 | 18..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:00:12 Download gff for
BO10634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2845-PA | 1353..2220 | 18..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:46:26 Download gff for
BO10634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phl-RB | 2242..3106 | 19..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:20:48 Download gff for
BO10634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phl-RA | 1941..2805 | 19..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:20:48 Download gff for
BO10634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2342499..2342786 | 596..883 | 99 | -> | Minus |
| X | 2342852..2343428 | 19..595 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:46:26 Download gff for
BO10634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2236532..2236819 | 596..883 | 99 | -> | Minus |
| arm_X | 2236885..2237461 | 19..595 | 100 | | Minus |
BO10634.5prime Sequence
872 bp (862 high quality bases) assembled on 2006-04-19
> BO10634.5prime
GAAGTTATCAGTCGACATGTCCAGCGAGTCCTCCACCGAAGGCGACAGCG
ATCTATACGATCCTTTGGCCGAGGAGCTGCACAACGTCCAGTTGGTCAAA
CATGTGACCCGCGAGAATATTGATGCCCTGAATGCCAAGTTTGCCAACCT
GCAGGAGCCACCAGCCATGTACTTAATAGAATACCAGGAGTTGACCTCCA
AGCTCCACGAACTGGAGGCCAAGGAGCAGGAACTAATGGAGCGACTGAAC
TCGCAGGACCAGCAGGAGGACTCCTCCTTGGTCGAGCGGTTCAAGGAGCA
GCCCCACTATCAAAATCAAACTCAAATCCTGCAGCAACAACGGCAATTGG
CGCGAGTGCACCACGGCAACGATCTAACCGATAGCTTGGGCTCTCAGCCG
GGCAGCCAATGTGGAACTTTGACCCGTCAGCCCAAGATCCTTTTGCGAGC
CCACCTGCCCAATCAACAGCGCACTTCAGTGGAGGTAATTTCGGGAGTAC
GACTATGTGATGCCCTCATGAAGGCCCTGAAACTCCGGCAACTAACGCCG
GATATGTGCGAAGTAAGCACAACTCATTCCGGAAGACATATCATACCCTG
GCACACGGATATCGGCACTCTGCATGTGGAGGAGATCTTTGTCAGGCTGC
TGGATAAGTTTCCCATTAGGACACACATCAAGCACCAGATCATACGGAAG
ACCTTCTTCTCGTTGGTATTCTGCGAGGGCTGTCGAAGGCTTCTGTTCAC
CGGGTTCTACTGTAGCCAGTGTAATTTTCGATTCCATCAGAGGTGTGCCA
ATAGAGTGCCGATGCTGTGCCAGCCCTTTCCCATGGATAGCTACTATCAG
CTACTGCTGGCCGAGAATCCGG
BO10634.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2845-PA | 2220 | phl-RA | 1..856 | 17..872 | 4280 | 100 | Plus |
| CG2845-PB | 2349 | phl-RB | 291..985 | 178..872 | 3475 | 100 | Plus |
| CG2845-PB | 2349 | phl-RB | 1..163 | 17..179 | 815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:01:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phl-RE | 4247 | CG2845-RE | 1588..2444 | 16..872 | 4285 | 100 | Plus |
| phl-RA | 3247 | CG2845-RA | 588..1444 | 16..872 | 4285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:01:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2341176..2341870 | 178..872 | 3475 | 100 | Plus |
| X | 23542271 | X | 2340885..2341048 | 16..179 | 820 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 13:01:41 has no hits.
BO10634.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:44:47 Download gff for
BO10634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phl-PA | 1..856 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:00:13 Download gff for
BO10634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2845-PA | 1..856 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:05:40 Download gff for
BO10634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phl-RA | 754..1616 | 9..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:45:34 Download gff for
BO10634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phl-RA | 582..1444 | 9..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:45:34 Download gff for
BO10634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2340879..2341048 | 9..179 | 97 | -> | Plus |
| X | 2341178..2341870 | 180..872 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:05:40 Download gff for
BO10634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2234912..2235081 | 9..179 | 97 | -> | Plus |
| arm_X | 2235211..2235903 | 180..872 | 100 | | Plus |
BO10634.pep Sequence
Translation from 16 to 2251
> BO10634.pep
MSSESSTEGDSDLYDPLAEELHNVQLVKHVTRENIDALNAKFANLQEPPA
MYLIEYQELTSKLHELEAKEQELMERLNSQDQQEDSSLVERFKEQPHYQN
QTQILQQQRQLARVHHGNDLTDSLGSQPGSQCGTLTRQPKILLRAHLPNQ
QRTSVEVISGVRLCDALMKALKLRQLTPDMCEVSTTHSGRHIIPWHTDIG
TLHVEEIFVRLLDKFPIRTHIKHQIIRKTFFSLVFCEGCRRLLFTGFYCS
QCNFRFHQRCANRVPMLCQPFPMDSYYQLLLAENPDNGVGFPGRGTAVRF
NMSSRSRSRRCSSSGSSSSSKPPSSSSGNHRQGRPPRISQDDRSNSAPNV
CINNIRSVTSEVQRSLIMQARPPLPHPCTDHSNSTQASPTSTLKHNRPRA
RSADESNKNLLLRDAKSSEENWNILAEEILIGPRIGSGSFGTVYRAHWHG
PVAVKTLNVKTPSPAQLQAFKNEVAMLKKTRHCNILLFMGCVSKPSLAIV
TQWCEGSSLYKHVHVSETKFKLNTLIDIGRQVAQGMDYLHAKNIIHRDLK
SNNIFLHEDLSVKIGDFGLATAKTRWSGEKQANQPTGSILWMAPEVIRMQ
ELNPYSFQSDVYAFGIVMYELLAECLPYGHISNKDQILFMVGRGLLRPDM
SQVRSDAPQALKRLAEDCIKYTPKDRPLFRPLLNMLENMLRTLPKIHRSA
SEPNLTQSQLQNDEFLYLPSPKTPVNFNNFQFFGSAGNIASFLDH
BO10634.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:24:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phl-PE | 739 | CG2845-PE | 1..739 | 1..739 | 3883 | 100 | Plus |
| phl-PA | 739 | CG2845-PA | 1..739 | 1..739 | 3883 | 100 | Plus |
| ksr-PD | 966 | CG2899-PD | 625..961 | 376..708 | 483 | 37.3 | Plus |
| ksr-PC | 966 | CG2899-PC | 625..961 | 376..708 | 483 | 37.3 | Plus |
| ksr-PB | 966 | CG2899-PB | 625..961 | 376..708 | 483 | 37.3 | Plus |
