Clone Sequence Records
BO10638.3prime Sequence
824 bp (783 high quality bases) assembled on 2006-04-19
> BO10638.3prime
ATGGTCTAGAAAGCTTGCGTTGATAAACTTTGTTTCCTTATTAAAACTAG
ATGCGACGGTAGCTTGATTTCTAGAGCCCACCTTGTAAAAATTACGCACT
CTTTGGGTTTTGCTAACTGGCGTTTCAGTACTACTTTTTTTTATATTTAA
CTTGTTGGGCTTCCGTGGAATTACGTTTTGACGAAGTTTAGCTGGAAACA
AATGATGACTAACTTCAAAGTCTTTTGTATTAAATACTTCACAGTCTACT
TGGATCATTTTCATTTTACCGTTAATTCCCGGATTTTCTAAGGGAAGTAC
CAACGACAATTTTGGGCGATAACTACTGTTGTAACTTAATGCTGGAAGTA
GTGCATGATCCATATTAAATGAAAATACGTAAAAAGTATCATCCCTTCTC
TCAATTTTACTAATTACATTTATTTGTTCGCGCATATTTTCAAAAGATTT
CGTATTGTTTAGTTTTTGCTGTTTTTCTGGCAAAACAGATGTGTAATCAT
TTAAATCAATAAACATTTTTCGCTTTTCGTGTTTGATGTGTATGTCACGT
TTTTCCTCAAAATAATTATTAAAAAATTCAAAACCATTTGAATCCTCTTT
TTCCTTTGAAAAATTAGACACGTTTAAAGTGCCGCTAATCCATTTATGCA
AATTTTGAGCGAGCATAAAGTATTTTGATTGATTGGAAGAACCATTATGG
GACCTGCACCTGTTTATACAGTTTCGTGTACTTAAATATGTTAAGGGTGG
AGGTTCATTATATGAGTAAGTATGAGATACATTTTTGGGTAATGTTTTCA
AAAGAATTGATTTTGTGGTTGCGT
BO10638.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3136-PC | 2226 | CG3136-RC | 1454..2223 | 788..19 | 3850 | 100 | Minus |
| CG3136-PA | 2220 | CG3136-RA | 1448..2217 | 788..19 | 3850 | 100 | Minus |
| CG3136-PB | 2220 | CG3136-RB | 1448..2217 | 788..19 | 3850 | 100 | Minus |
| CG3136-PC | 2226 | CG3136-RC | 1419..1455 | 824..788 | 185 | 100 | Minus |
| CG3136-PA | 2220 | CG3136-RA | 1413..1449 | 824..788 | 185 | 100 | Minus |
| CG3136-PB | 2220 | CG3136-RB | 1413..1449 | 824..788 | 185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:19:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atf6-RB | 3959 | CG3136-RB | 2426..3230 | 824..19 | 4005 | 99.9 | Minus |
| Atf6-RA | 3076 | CG3136-RA | 1543..2347 | 824..19 | 4005 | 99.9 | Minus |
| Atf6-RC | 2488 | CG3136-RC | 1517..2321 | 824..19 | 4005 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:19:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5153223..5154027 | 824..19 | 3980 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-12 00:19:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 493..567 | 454..528 | 140 | 68.4 | Plus |
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 7310..7384 | 454..528 | 140 | 68.4 | Plus |
BO10638.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:44:54 Download gff for
BO10638.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3136-PB | 1413..2220 | 15..824 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:00:21 Download gff for
BO10638.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3136-PB | 1413..2220 | 15..824 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:51:33 Download gff for
BO10638.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RC | 1517..2331 | 6..824 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:03:13 Download gff for
BO10638.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RC | 1517..2331 | 6..824 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:03:13 Download gff for
BO10638.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5153223..5154037 | 6..824 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:51:33 Download gff for
BO10638.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1040728..1041542 | 6..824 | 99 | | Minus |
BO10638.5prime Sequence
919 bp (806 high quality bases) assembled on 2006-04-19
> BO10638.5prime
GAAGTTATCAGTCGACATGACGCCATGTTTATTTTCAGACGATTTATCGC
TGTTGGGAGAAGTGACTGAAAATAACTACGACAATAATATTGTACACGAC
ATTCTGAACTCATCAGCATTCTACAATGATACATCGTTAGATCTAAGTGA
ATTAATACCTGATCTTCAAAAAGAAGCCTTTGGATTGCATTTCTCGTCAA
ACCCAATAACTTCAGAATTTAGCTTGAGTTCCCCGATTTCTGGTTTGAAA
CAAATTCCTTCAGCGTGTTCTGGTGAATTTAAAAGAAATGTAAATGACAA
TAATTTTCAATTGGATCTTACCAACAGTAGAAATGATTTACCTGAGCCTA
ATTCGTCTCCCACAAGAAGCTTAAATCGTTCAAATGTAAATGGATGTTCT
AACGAAGAGGCGGTCTATCCACTCTTAGTCGATTCAGATAAGTTTGATCC
ATTTTTTGAACCTGCTAAAGTTCGGAGCCCCAACAAAGAATTCAACAGCA
CGATTTCTAATCTATCAGATATAAAAAACGAACTTCCGGAAACTTCCCAA
GACTTGGGTTTTAATTCATATAACACTTCAAGGAATAATTCAACTTTAAC
CAAAAGCTGGCCAATAAATACTGAGCTGAATCTAGATAATCAAGTTCCAA
AAACAGTTTTACCTTTGTCAAGGACAATTTATTTACCTTCACATGATTAC
AAAGGGCTTTTGCCAACAGTGAAATGTAACGGTGATAGAACCTTAAAGAA
AAATGTTAATGTCAGGTCTAAGATTTCTAATATCGTTATTAAGAAAAAAA
ATGCAACTTTTATACAATCATTGAAAGAAAGCACTCCATCACATACAATG
GATGATAAGATCTACAAAAATATCAACGTATGATTAAGAACCGAGAGTCT
GCTTCCTATCACGCAAAAA
BO10638.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3136-PA | 2220 | CG3136-RA | 1..854 | 17..870 | 4270 | 100 | Plus |
| CG3136-PB | 2220 | CG3136-RB | 1..854 | 17..870 | 4270 | 100 | Plus |
| CG3136-PC | 2226 | CG3136-RC | 29..860 | 39..870 | 4160 | 100 | Plus |
| CG3136-PA | 2220 | CG3136-RA | 851..892 | 866..907 | 210 | 100 | Plus |
| CG3136-PB | 2220 | CG3136-RB | 851..892 | 866..907 | 210 | 100 | Plus |
| CG3136-PC | 2226 | CG3136-RC | 857..898 | 866..907 | 210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:04:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atf6-RB | 3959 | CG3136-RB | 1014..1918 | 17..919 | 4475 | 99.8 | Plus |
| Atf6-RA | 3076 | CG3136-RA | 131..1035 | 17..919 | 4475 | 99.8 | Plus |
| Atf6-RC | 2488 | CG3136-RC | 127..1009 | 39..919 | 4365 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:04:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5148179..5149083 | 17..919 | 4425 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-02 13:04:52 has no hits.
BO10638.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:44:55 Download gff for
BO10638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3136-PB | 1..900 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:00:23 Download gff for
BO10638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3136-PB | 1..900 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:06:17 Download gff for
BO10638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RA | 125..1030 | 9..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:45:58 Download gff for
BO10638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RA | 125..1030 | 9..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:45:58 Download gff for
BO10638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5148169..5149078 | 5..914 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:06:17 Download gff for
BO10638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1035674..1036583 | 5..914 | 99 | | Plus |
BO10638.complete Sequence
2251 bp assembled on 2008-01-16
GenBank Submission: FJ631823
> BO10638.complete
GAAGTTATCAGTCGACATGACGCCATGTTTATTTTCAGACGATTTATCGC
TGTTGGGAGAAGTGACTGAAAATAACTACGACAATAATATTGTACACGAC
ATTCTGAACTCATCAGCATTCTACAATGATACATCGTTAGATCTAAGTGA
ATTAATACCTGATCTTCAAAAAGAAGCCTTTGGATTGCATTTCTCGTCAA
ACCCAATAACTTCAGAATTTAGCTTGAGTTCCCCGATTTCTGGTTTGAAA
CAAATTCCTTCAGCGTGTTCTGGTGAATTTAAAAGAAATGTAAATGACAA
TAATTTTCAATTGGATCTTACCAACAGTAGAAATGATTTACCTGAGCCTA
ATTCGTCTCCCACAAGAAGCTTAAATCGTTCAAATGTAAATGGATGTTCT
AACGAAGAGGCGGTCTATCCACTCTTAGTCGATTCAGATAAGTTTGATCC
ATTTTTTGAACCTGCTAAAGTTCGGAGCCCCAACAAAGAATTCAACAGCA
CGATTTCTAATCTATCAGATATAAAAAACGAACTTCCGGAAACTTCCCAA
GACTTGGGTTTTAATTCATATAACACTTCAAGGAATAATTCAACTTTAAC
CAAAAGCTGGCCAATAAATACTGAGCTGAATCTAGATAATCAAGTTCCAA
AAACAGTTTTACCTTTGTCAAGGACAATTTATTTACCTTCACATGATTAC
AAAGGGCTTTTGCCAACAGTGAAATGTAACGGTGATAGAACCTTAAAGAA
AAATGTTAATGTCAGGTCTAAGATTTCTAATATCGTTATTAAGAAAAAAA
ATGCAACTTTTATACAATCATTGAAAGAAAGCACTCCATCACATACAATG
GATGATAAGATCTACAAAAAATATCAACGTATGATTAAGAACCGAGAGTC
TGCTTCCTTATCACGCAAAAAAAGAAAGGAGTATGTTGTTTCATTAGAGA
CTCGAATAAATAAACTTGAAAAAGAATGCGATTCCCTAAAAGCTGAAAAT
ATAACATTACGGGATCAGATATTTCTGCTTGCCACCTCTTGTCAGCGTGA
ATCTGGAAATGCAAATGGTCTTTTACATAACTATTCAGGATCTGAACGAA
GCGAAAATAAAAACGGAAGATTTACATCAAAGGCAAAGCATTGCAATAAA
AATAATACCACAGCAACCATTAAAAAAAATGTAGCTATATTATTTGCTAT
GGCTTTTGTGGTATCTCTAAACGCTGGAAATTTTCAAAAGTATCTCAACA
TACCAAATAACTTGGAAGGTAAAAGTGAGATTGAGCCTGTCGGAAAACAA
TTAAGCATGTCCAATCGACGGTTACTATGGGCTGATTCAGAGGAGGAATA
TAAAGAAAAAAACAATCTAAGTACATTTCTTTCAGGCAAACAGAAAGAAC
CGTCTCTATATTTCTTAAATTCTGGTATACGCAACCACAAAATCAATTCT
TTTGAAAACATTACCAAAAATGTATCTCATACTTACTCATATAATGAACC
TCCACCCTTAACATATTTAAGTACACGAAACTGTATAAACAGGTGCAGGT
CCCATAATGGTTCTTCCAATCAATCAAAATACTTTATGCTCGCTCAAAAT
TTGCATAAATGGATTAGCGGCACTTTAAACGTGTCTAATTTTTCAAAGGA
AAAAGAGGATTCAAATGGTTTTGAATTTTTTAATAATTATTTTGAGGAAA
AACGTGACATACACATCAAACACGAAAAGCGAAAAATGTTTATTGATTTA
AATGATTACACATCTGTTTTGCCAGAAAAACAGCAAAAACTAAACAATAC
GAAATCTTTTGAAAATATGCGCGAACAAATAAATGTAATTAGTAAAATTG
AGAGAAGGGATGATACTTTTTACGTATTTTCATTTAATATGGATCATGCA
CTACTTCCAGCATTAAGTTACAACAGTAGTTATCGCCCAAAATTGTCGTT
GGTACTTCCCTTAGAAAATCCGGGAATTAACGGTAAAATGAAAATGATCC
AAGTAGACTGTGAAGTATTTAATACAAAAGACTTTGAAGTTAGTCATCAT
TTGTTTCCAGCTAAACTTCGTCAAAACGTAATTCCACGGAAGCCCAACAA
GTTAAATATAAAAAAAAGTAGTACTGAAACGCCAGTTAGCAAAACCCAAA
GAGTGCGTAATTTTTACAAGGTGGGCTCTAGAAATCAAGCTACCGTCGCA
TCTAGTTTTAATAAGGAAACAAAGTTTATCAACGCAAGCTTTCTAGACCA
T
BO10638.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:03:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atf6-RB | 2220 | CG3136-PB | 1..2217 | 17..2233 | 11085 | 100 | Plus |
| Atf6-RA | 2220 | CG3136-PA | 1..2217 | 17..2233 | 11085 | 100 | Plus |
| Atf6-RC | 2226 | CG3136-PC | 29..2223 | 39..2233 | 10975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:03:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atf6-RB | 3959 | CG3136-RB | 1014..3230 | 17..2233 | 11085 | 100 | Plus |
| Atf6-RA | 3076 | CG3136-RA | 131..2347 | 17..2233 | 11085 | 100 | Plus |
| Atf6-RC | 2488 | CG3136-RC | 127..2321 | 39..2233 | 10975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:03:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5152789..5154027 | 995..2233 | 6195 | 100 | Plus |
| 2R | 25286936 | 2R | 5148179..5149157 | 17..995 | 4895 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:03:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 493..567 | 1798..1724 | 140 | 68.4 | Minus |
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 7310..7384 | 1798..1724 | 140 | 68.4 | Minus |
BO10638.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:20 Download gff for
BO10638.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RB | 1..2220 | 17..2237 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:38 Download gff for
BO10638.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RB | 1014..3230 | 17..2235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:10 Download gff for
BO10638.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RA | 131..2347 | 17..2235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:56:20 Download gff for
BO10638.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RB | 1004..3240 | 5..2246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:01 Download gff for
BO10638.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RA | 131..2347 | 17..2235 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:01 Download gff for
BO10638.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5148179..5149156 | 17..994 | 100 | -> | Plus |
| 2R | 5152789..5154027 | 995..2235 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:10 Download gff for
BO10638.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1035684..1036661 | 17..994 | 100 | -> | Plus |
| arm_2R | 1040294..1041532 | 995..2235 | 99 | | Plus |
BO10638.pep Sequence
Translation from 16 to 2251
> BO10638.pep
MTPCLFSDDLSLLGEVTENNYDNNIVHDILNSSAFYNDTSLDLSELIPDL
QKEAFGLHFSSNPITSEFSLSSPISGLKQIPSACSGEFKRNVNDNNFQLD
LTNSRNDLPEPNSSPTRSLNRSNVNGCSNEEAVYPLLVDSDKFDPFFEPA
KVRSPNKEFNSTISNLSDIKNELPETSQDLGFNSYNTSRNNSTLTKSWPI
NTELNLDNQVPKTVLPLSRTIYLPSHDYKGLLPTVKCNGDRTLKKNVNVR
SKISNIVIKKKNATFIQSLKESTPSHTMDDKIYKKYQRMIKNRESASLSR
KKRKEYVVSLETRINKLEKECDSLKAENITLRDQIFLLATSCQRESGNAN
GLLHNYSGSERSENKNGRFTSKAKHCNKNNTTATIKKNVAILFAMAFVVS
LNAGNFQKYLNIPNNLEGKSEIEPVGKQLSMSNRRLLWADSEEEYKEKNN
LSTFLSGKQKEPSLYFLNSGIRNHKINSFENITKNVSHTYSYNEPPPLTY
LSTRNCINRCRSHNGSSNQSKYFMLAQNLHKWISGTLNVSNFSKEKEDSN
GFEFFNNYFEEKRDIHIKHEKRKMFIDLNDYTSVLPEKQQKLNNTKSFEN
MREQINVISKIERRDDTFYVFSFNMDHALLPALSYNSSYRPKLSLVLPLE
NPGINGKMKMIQVDCEVFNTKDFEVSHHLFPAKLRQNVIPRKPNKLNIKK
SSTETPVSKTQRVRNFYKVGSRNQATVASSFNKETKFINASFLDH
BO10638.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atf6-PB | 739 | CG3136-PB | 1..739 | 1..739 | 3843 | 100 | Plus |
| Atf6-PA | 739 | CG3136-PA | 1..739 | 1..739 | 3843 | 100 | Plus |
| Atf6-PC | 741 | CG3136-PC | 10..741 | 8..739 | 3798 | 99.9 | Plus |
