Clone Sequence Records
BO10640.3prime Sequence
901 bp (819 high quality bases) assembled on 2006-04-19
> BO10640.3prime
ATGGTCTAGAAAGCTTGCGTTGCGGTTCTGCGATACGTTCATTACGTCCA
AGGCAGCTGAGATATTGCCCTGAACCGACTCTAGGAGCTGGGTTAGCCAG
GCGCCCTCGTTGCTGAAACCCATGGCCATCATGGCATGGATCGATTTATT
GATGCTTTCATCAGTGTGGTAGACGGGGACCGTGCGCTTGTCGTCGGGAG
CTGCTGGGGAGGTGCCGACGCTATTGGTGGTCACCGATGTGGTCGAGGTC
GATGTACTCACCGTATCAACTTGAGCAGTCTGGGTGTTGGCCGAAGCCTG
CTCCACGCGAGCCTCCTCATTCATGTGCTGACGCAATAGTTCGCCCAGCT
GACCAAAATCACGCACCGGCTCCTGAGGAGCAGCAGTGGGATTGGTTGTG
TCCAGATTGATCAAGTTACTATTGTTTGCAGAGTATGCATTGTCAATAAG
CTGCCACTCTGGATCCAAGCTGTCTGAACGGCGTCTTTCCTGCTCTGTTT
CGGTGGTGGTTTCCGATGGCTTAGGATTCAGGGGCTCTGTCTCAAGCTGA
GCATCAGGGATCGAACCAGAAATTGATGGAGTGGCCGACTGGTTAGCAGA
TGGGACATTAGACTGATTAGCCGATGGAGCGGCAGAGGGAACAGCTGACT
GGTTGGCCGAGGATGCCCCCGACTGGCCACTGGATTGACCCTGCTCTTCT
GGTTTCTTATTCTCAGCACTGGGAGTCGTTGAGGGCGCAAAAATTCCCGA
ATCACCGCCCTCAGTGGTATCGATAATCTTGGAAAACATTTCGCTGAAGT
TATTAAGGATTTCGATGCCAGCACTCATGTACTCGGGTGGCACAATCTGC
GGAATGTTATCCAGATTTATCACTGGAGTAATTGGGCTGAGTGGAACGTG
G
BO10640.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10360-PA | 1800 | ref(2)P-RA | 936..1797 | 880..19 | 4260 | 99.7 | Minus |
CG10360-PB | 1800 | ref(2)P-RB | 936..1797 | 880..19 | 4260 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:31:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ref(2)P-RB | 2395 | CG10360-RB | 1265..2146 | 901..19 | 4345 | 99.5 | Minus |
ref(2)P-RA | 2305 | CG10360-RA | 1265..2146 | 901..19 | 4345 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:31:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19544363..19545101 | 901..162 | 3605 | 99.5 | Minus |
2L | 23513712 | 2L | 19545156..19545299 | 162..19 | 720 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:31:27 has no hits.
BO10640.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:44:57 Download gff for
BO10640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10360-PA | 916..1800 | 15..901 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:00:26 Download gff for
BO10640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10360-PB | 916..1800 | 15..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:26:48 Download gff for
BO10640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ref(2)P-RA | 1265..2154 | 11..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:27 Download gff for
BO10640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ref(2)P-RA | 1265..2154 | 11..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:27 Download gff for
BO10640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19544363..19545101 | 162..901 | 99 | -> | Minus |
2L | 19545157..19545307 | 11..161 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:26:48 Download gff for
BO10640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19544363..19545101 | 162..901 | 99 | -> | Minus |
arm_2L | 19545157..19545307 | 11..161 | 97 | | Minus |
BO10640.5prime Sequence
874 bp (776 high quality bases) assembled on 2006-04-19
> BO10640.5prime
GAAGTTATCAGTCGACAATGCCGGAGAAGCTGTTGAAAATCACCTACCAG
GGCGCTGGACCCCAGAAAAAGATAAATGCATACCTGCGGATGCCCTCCCA
GAATTACACCATATTGCGTCGCGAAATCGAGCTGTATCTTTTCCAGGAGC
GCCAGTTACCCAAATGCGACGTAAGGACCTTCTGGATCGACGCTGATAAA
GATGAAATCGAAATAGTCAACCAAAATGACTATGAGATTTTCCTGGCCAA
GTGCGAGAGCAATATGCACGTTCAGGTGGCTCCACTGGCGCCCGTAGAGG
AGCCAAAGGCCACCAAGCAAGAGGGTTCTTCGGCCAACGCTGAAGCTCCT
TCTGTCGACGATCCGAGCAATTTCACCATCCACGACGCCGTTGAATGCGA
TGGCTGCGGCTTGGCTCCCTTGATTGGGTTCCGCTACAAGTGCGTTCAGT
GCAGCAACTATGATCTTTGCCAGAAATGCGAGTTGGCTCACAAGCATCCT
GAGCACTTGATGCTACGCATGCCGACCAACAATGGACCCGGTATGGTCGA
TGCCTGGTTCACAGGTCCAGGATTGGGACGCCGCAGTGGCCGGCGCTCCA
GGGGACATTGCCCGTTTCAGGAGACGAACCAGGCAGATCCTGCTGGCGAA
CCCGCAAGGGATAGTCGCCGTGAACGGCGTCAGGCCCGCCGCCATGCCGG
AGTCTTGACTCAGTTTGTCGAGATGATGACCAACTTGCCGCTGAACACAA
CAACGGCCACGGCACCAGCCGAACCGCAGAAACCGAAGGCTGCAGAACAA
ACTGAAAGTCCTCACAAGCTGAGCCCACTGTTACCGCTNGAAAGGCAGCT
GAATCCGAGGCCAAACCACTGAGC
BO10640.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10360-PA | 1800 | ref(2)P-RA | 1..796 | 18..813 | 3980 | 100 | Plus |
CG10360-PB | 1800 | ref(2)P-RB | 1..796 | 18..813 | 3980 | 100 | Plus |
CG10360-PA | 1800 | ref(2)P-RA | 797..852 | 813..868 | 236 | 96.4 | Plus |
CG10360-PB | 1800 | ref(2)P-RB | 797..852 | 813..868 | 236 | 96.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ref(2)P-RB | 2395 | CG10360-RB | 345..1208 | 13..874 | 4229 | 99.4 | Plus |
ref(2)P-RA | 2305 | CG10360-RA | 345..1208 | 13..874 | 4229 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19543619..19544299 | 189..868 | 3329 | 99.6 | Plus |
2L | 23513712 | 2L | 19542812..19542988 | 13..189 | 870 | 99.4 | Plus |
Blast to na_te.dros performed 2015-02-04 04:26:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
1731 | 4648 | 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). | 1921..1976 | 694..752 | 116 | 71.2 | Plus |
BO10640.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:44:59 Download gff for
BO10640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10360-PA | 1..859 | 18..874 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:00:27 Download gff for
BO10640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10360-PB | 1..859 | 18..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:01:40 Download gff for
BO10640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ref(2)P-RA | 345..1208 | 13..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:36:32 Download gff for
BO10640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ref(2)P-RA | 345..1208 | 13..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:36:32 Download gff for
BO10640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19542812..19542988 | 13..189 | 99 | -> | Plus |
2L | 19543620..19544306 | 190..874 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:01:40 Download gff for
BO10640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19542812..19542988 | 13..189 | 99 | -> | Plus |
arm_2L | 19543620..19544306 | 190..874 | 99 | | Plus |
BO10640.complete Sequence
1832 bp assembled on 2008-08-14
GenBank Submission: KX799953
> BO10640.complete
GAAGTTATCAGTCGACAATGCCGGAGAAGCTGTTGAAAATCACCTACCAG
GGCGCTGGACCCCAGAAAAAGATAAATGCATACCTGCGGATGCCCTCCCA
GAATTACACCATATTGCGTCGCGAAATCGAGCTGTATCTTTTCCAGGAGC
GCCAGTTACCCAAATGCGACGTAAGGACCTTCTGGATCGACGCTGATAAA
GATGAAATCGAAATAGTCAACCAAAATGACTATGAGATTTTCCTGGCCAA
GTGCGAGAGCAATATGCACGTTCAGGTGGCTCCACTGGCGCCCGTAGAGG
AGCCAAAGGCCACCAAGCAAGAGGGTTCTTCGGCCAACGCTGAAGCTCCT
TCTGTCGACGATCCGAGCAATTTCACCATCCACGACGCCGTTGAATGCGA
TGGCTGCGGCTTGGCTCCCTTGATTGGGTTCCGCTACAAGTGCGTTCAGT
GCAGCAACTATGATCTTTGCCAGAAATGCGAGTTGGCTCACAAGCATCCT
GAGCACTTGATGCTACGCATGCCGACCAACAATGGACCCGGTATGGTCGA
TGCCTGGTTCACAGGTCCAGGATTGGGACGCCGCAGTGGCCGGCGCTCCA
GGGGACATTGCCCGTTTCAGGAGACGAACCAGGCAGATCCTGCTGGCGAA
CCCGCAAGGGATAGTCGCCGTGAACGGCGTCAGGCCCGCCGCCATGCCGG
AGTCTTGACTCAGTTTGTCGAGATGATGACCAACTTGCCGCTGAACACAA
CAACGGCCACGGCACCAGCCGAACCGCAGAAACCGAAGGCTGCAGAACAA
ACTGAAAGTCCTCCACAAGCTGAGCCCACTGTTACCGCTGAAAAGGCAGC
TGAATCCGAGGCCAAACCAACTGAGCCGAAGAAGGTTAACACTGATCAAA
GTGTCCCTAGAACCGAAGATCCAGTGACGACTCCACGTTCCACTCAGCCA
ACTACTCCAGTGATTAATCTGGATAACATTTCGCAGATTGTGCCACCCGA
GTACATGAGTGCTGGCATCGAAATCCTTAATAACTTCAGCGAAATGTTTT
CCAAGATTATCGATACCACTGAGGGCGGTGATTCGGGAATTTTTGCGCCC
TCAACGACTCCCAGTGCTGAGAATAAGAAACCAGAAGAGCAGGGTCAATC
CAGTGGCCAGTCGGGGGCATCCTCGGCCAACCAGTCAGCTGTTCCCTCTG
CCGCTCCATCGGCTAATCAGTCTAATGTCCCATCTGCTAACCAGTCGGCC
ACTCCATCAATTTCTGGTTCGATCCCTGATGCTCAGCTTGAGACAGAGCC
CCTGAATCCTAAGCCATCGGAAACCACCACCGAAACAGAGCAGGAAAGAC
GCCGTTCAGACAGCTTGGATCCAGAGTGGCAGCTTATTGACAATGCATAC
TCTGCAAACAATAGTAACTTGATCAATCTGGACACAACCAATCCCACTGC
TGCTCCTCAGGAGCCGGTGCGTGATTTTGGTCAGCTGGGCGAACTATTGC
GTCAGCACATGAATGAGGAGGCTCGCGTGGAGCAGGCTTCGGCCAACACC
CAGACTGCTCAAGTTGATACGGTGAGTACATCGACCTCGACCACATCGGT
GACCACCAATAGCGTCGGCACCTCCCCAGCAGCTCCCGACGACAAGCGCA
CGGTCCCCGTCTACCACACTGATGAAAGCATCAATAAATCGATCCATGCC
ATGATGGCCATGGGTTTCAGCAACGAGGGCGCCTGGCTAACCCAGCTCCT
AGAGTCGGTTCAGGGCAATATCTCAGCTGCCTTGGACGTAATGAACGTAT
CGCAGAACCGCAACGCAAGCTTTCTAGACCAT
BO10640.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ref(2)P-RB | 1800 | CG10360-PB | 1..1797 | 18..1814 | 8985 | 100 | Plus |
ref(2)P-RA | 1800 | CG10360-PA | 1..1797 | 18..1814 | 8985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ref(2)P-RB | 2395 | CG10360-RB | 345..2146 | 13..1814 | 8995 | 99.9 | Plus |
ref(2)P-RA | 2305 | CG10360-RA | 345..2146 | 13..1814 | 8995 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19543619..19545101 | 189..1671 | 7415 | 100 | Plus |
2L | 23513712 | 2L | 19542812..19542988 | 13..189 | 870 | 99.4 | Plus |
2L | 23513712 | 2L | 19545156..19545299 | 1671..1814 | 720 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:41:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
1731 | 4648 | 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). | 1921..1976 | 694..752 | 116 | 71.2 | Plus |
BO10640.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:28:30 Download gff for
BO10640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ref(2)P-RB | 177..1974 | 17..1816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:24 Download gff for
BO10640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ref(2)P-RA | 349..2146 | 17..1816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-03 15:33:21 Download gff for
BO10640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ref(2)P-RB | 173..1982 | 13..1822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:44 Download gff for
BO10640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ref(2)P-RA | 349..2146 | 17..1816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:44 Download gff for
BO10640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19542816..19542988 | 17..189 | 100 | -> | Plus |
2L | 19543620..19545101 | 190..1671 | 100 | -> | Plus |
2L | 19545157..19545299 | 1672..1816 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:24 Download gff for
BO10640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19543620..19545101 | 190..1671 | 100 | -> | Plus |
arm_2L | 19545157..19545299 | 1672..1816 | 98 | | Plus |
arm_2L | 19542816..19542988 | 17..189 | 100 | -> | Plus |
BO10640.pep Sequence
Translation from 17 to 1832
> BO10640.pep
MPEKLLKITYQGAGPQKKINAYLRMPSQNYTILRREIELYLFQERQLPKC
DVRTFWIDADKDEIEIVNQNDYEIFLAKCESNMHVQVAPLAPVEEPKATK
QEGSSANAEAPSVDDPSNFTIHDAVECDGCGLAPLIGFRYKCVQCSNYDL
CQKCELAHKHPEHLMLRMPTNNGPGMVDAWFTGPGLGRRSGRRSRGHCPF
QETNQADPAGEPARDSRRERRQARRHAGVLTQFVEMMTNLPLNTTTATAP
AEPQKPKAAEQTESPPQAEPTVTAEKAAESEAKPTEPKKVNTDQSVPRTE
DPVTTPRSTQPTTPVINLDNISQIVPPEYMSAGIEILNNFSEMFSKIIDT
TEGGDSGIFAPSTTPSAENKKPEEQGQSSGQSGASSANQSAVPSAAPSAN
QSNVPSANQSATPSISGSIPDAQLETEPLNPKPSETTTETEQERRRSDSL
DPEWQLIDNAYSANNSNLINLDTTNPTAAPQEPVRDFGQLGELLRQHMNE
EARVEQASANTQTAQVDTVSTSTSTTSVTTNSVGTSPAAPDDKRTVPVYH
TDESINKSIHAMMAMGFSNEGAWLTQLLESVQGNISAALDVMNVSQNRNA
SFLDH
BO10640.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:49:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ref(2)P-PB | 599 | CG10360-PB | 1..599 | 1..599 | 3119 | 100 | Plus |
ref(2)P-PA | 599 | CG10360-PA | 1..599 | 1..599 | 3119 | 100 | Plus |
Muc68D-PB | 1514 | CG6004-PB | 521..904 | 211..582 | 164 | 21.7 | Plus |