Clone BO10640 Report

Search the DGRC for BO10640

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:106
Well:40
Vector:pDNR-Dual
Associated Gene/Transcriptref(2)P-RA
Protein status:BO10640.pep: Inserted from web
Sequenced Size:1832

Clone Sequence Records

BO10640.3prime Sequence

901 bp (819 high quality bases) assembled on 2006-04-19

> BO10640.3prime
ATGGTCTAGAAAGCTTGCGTTGCGGTTCTGCGATACGTTCATTACGTCCA
AGGCAGCTGAGATATTGCCCTGAACCGACTCTAGGAGCTGGGTTAGCCAG
GCGCCCTCGTTGCTGAAACCCATGGCCATCATGGCATGGATCGATTTATT
GATGCTTTCATCAGTGTGGTAGACGGGGACCGTGCGCTTGTCGTCGGGAG
CTGCTGGGGAGGTGCCGACGCTATTGGTGGTCACCGATGTGGTCGAGGTC
GATGTACTCACCGTATCAACTTGAGCAGTCTGGGTGTTGGCCGAAGCCTG
CTCCACGCGAGCCTCCTCATTCATGTGCTGACGCAATAGTTCGCCCAGCT
GACCAAAATCACGCACCGGCTCCTGAGGAGCAGCAGTGGGATTGGTTGTG
TCCAGATTGATCAAGTTACTATTGTTTGCAGAGTATGCATTGTCAATAAG
CTGCCACTCTGGATCCAAGCTGTCTGAACGGCGTCTTTCCTGCTCTGTTT
CGGTGGTGGTTTCCGATGGCTTAGGATTCAGGGGCTCTGTCTCAAGCTGA
GCATCAGGGATCGAACCAGAAATTGATGGAGTGGCCGACTGGTTAGCAGA
TGGGACATTAGACTGATTAGCCGATGGAGCGGCAGAGGGAACAGCTGACT
GGTTGGCCGAGGATGCCCCCGACTGGCCACTGGATTGACCCTGCTCTTCT
GGTTTCTTATTCTCAGCACTGGGAGTCGTTGAGGGCGCAAAAATTCCCGA
ATCACCGCCCTCAGTGGTATCGATAATCTTGGAAAACATTTCGCTGAAGT
TATTAAGGATTTCGATGCCAGCACTCATGTACTCGGGTGGCACAATCTGC
GGAATGTTATCCAGATTTATCACTGGAGTAATTGGGCTGAGTGGAACGTG
G

BO10640.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10360-PA 1800 ref(2)P-RA 936..1797 880..19 4260 99.7 Minus
CG10360-PB 1800 ref(2)P-RB 936..1797 880..19 4260 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
ref(2)P-RB 2395 CG10360-RB 1265..2146 901..19 4345 99.5 Minus
ref(2)P-RA 2305 CG10360-RA 1265..2146 901..19 4345 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19544363..19545101 901..162 3605 99.5 Minus
2L 23513712 2L 19545156..19545299 162..19 720 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:31:27 has no hits.

BO10640.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:44:57 Download gff for BO10640.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10360-PA 916..1800 15..901 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:00:26 Download gff for BO10640.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10360-PB 916..1800 15..901 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:26:48 Download gff for BO10640.3prime
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RA 1265..2154 11..901 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:27 Download gff for BO10640.3prime
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RA 1265..2154 11..901 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:27 Download gff for BO10640.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19544363..19545101 162..901 99 -> Minus
2L 19545157..19545307 11..161 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:26:48 Download gff for BO10640.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19544363..19545101 162..901 99 -> Minus
arm_2L 19545157..19545307 11..161 97   Minus

BO10640.5prime Sequence

874 bp (776 high quality bases) assembled on 2006-04-19

> BO10640.5prime
GAAGTTATCAGTCGACAATGCCGGAGAAGCTGTTGAAAATCACCTACCAG
GGCGCTGGACCCCAGAAAAAGATAAATGCATACCTGCGGATGCCCTCCCA
GAATTACACCATATTGCGTCGCGAAATCGAGCTGTATCTTTTCCAGGAGC
GCCAGTTACCCAAATGCGACGTAAGGACCTTCTGGATCGACGCTGATAAA
GATGAAATCGAAATAGTCAACCAAAATGACTATGAGATTTTCCTGGCCAA
GTGCGAGAGCAATATGCACGTTCAGGTGGCTCCACTGGCGCCCGTAGAGG
AGCCAAAGGCCACCAAGCAAGAGGGTTCTTCGGCCAACGCTGAAGCTCCT
TCTGTCGACGATCCGAGCAATTTCACCATCCACGACGCCGTTGAATGCGA
TGGCTGCGGCTTGGCTCCCTTGATTGGGTTCCGCTACAAGTGCGTTCAGT
GCAGCAACTATGATCTTTGCCAGAAATGCGAGTTGGCTCACAAGCATCCT
GAGCACTTGATGCTACGCATGCCGACCAACAATGGACCCGGTATGGTCGA
TGCCTGGTTCACAGGTCCAGGATTGGGACGCCGCAGTGGCCGGCGCTCCA
GGGGACATTGCCCGTTTCAGGAGACGAACCAGGCAGATCCTGCTGGCGAA
CCCGCAAGGGATAGTCGCCGTGAACGGCGTCAGGCCCGCCGCCATGCCGG
AGTCTTGACTCAGTTTGTCGAGATGATGACCAACTTGCCGCTGAACACAA
CAACGGCCACGGCACCAGCCGAACCGCAGAAACCGAAGGCTGCAGAACAA
ACTGAAAGTCCTCACAAGCTGAGCCCACTGTTACCGCTNGAAAGGCAGCT
GAATCCGAGGCCAAACCACTGAGC

BO10640.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG10360-PA 1800 ref(2)P-RA 1..796 18..813 3980 100 Plus
CG10360-PB 1800 ref(2)P-RB 1..796 18..813 3980 100 Plus
CG10360-PA 1800 ref(2)P-RA 797..852 813..868 236 96.4 Plus
CG10360-PB 1800 ref(2)P-RB 797..852 813..868 236 96.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
ref(2)P-RB 2395 CG10360-RB 345..1208 13..874 4229 99.4 Plus
ref(2)P-RA 2305 CG10360-RA 345..1208 13..874 4229 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19543619..19544299 189..868 3329 99.6 Plus
2L 23513712 2L 19542812..19542988 13..189 870 99.4 Plus
Blast to na_te.dros performed 2015-02-04 04:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
1731 4648 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). 1921..1976 694..752 116 71.2 Plus

BO10640.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:44:59 Download gff for BO10640.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10360-PA 1..859 18..874 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:00:27 Download gff for BO10640.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10360-PB 1..859 18..874 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:01:40 Download gff for BO10640.5prime
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RA 345..1208 13..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:36:32 Download gff for BO10640.5prime
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RA 345..1208 13..874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:36:32 Download gff for BO10640.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19542812..19542988 13..189 99 -> Plus
2L 19543620..19544306 190..874 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:01:40 Download gff for BO10640.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19542812..19542988 13..189 99 -> Plus
arm_2L 19543620..19544306 190..874 99   Plus

BO10640.complete Sequence

1832 bp assembled on 2008-08-14

GenBank Submission: KX799953

> BO10640.complete
GAAGTTATCAGTCGACAATGCCGGAGAAGCTGTTGAAAATCACCTACCAG
GGCGCTGGACCCCAGAAAAAGATAAATGCATACCTGCGGATGCCCTCCCA
GAATTACACCATATTGCGTCGCGAAATCGAGCTGTATCTTTTCCAGGAGC
GCCAGTTACCCAAATGCGACGTAAGGACCTTCTGGATCGACGCTGATAAA
GATGAAATCGAAATAGTCAACCAAAATGACTATGAGATTTTCCTGGCCAA
GTGCGAGAGCAATATGCACGTTCAGGTGGCTCCACTGGCGCCCGTAGAGG
AGCCAAAGGCCACCAAGCAAGAGGGTTCTTCGGCCAACGCTGAAGCTCCT
TCTGTCGACGATCCGAGCAATTTCACCATCCACGACGCCGTTGAATGCGA
TGGCTGCGGCTTGGCTCCCTTGATTGGGTTCCGCTACAAGTGCGTTCAGT
GCAGCAACTATGATCTTTGCCAGAAATGCGAGTTGGCTCACAAGCATCCT
GAGCACTTGATGCTACGCATGCCGACCAACAATGGACCCGGTATGGTCGA
TGCCTGGTTCACAGGTCCAGGATTGGGACGCCGCAGTGGCCGGCGCTCCA
GGGGACATTGCCCGTTTCAGGAGACGAACCAGGCAGATCCTGCTGGCGAA
CCCGCAAGGGATAGTCGCCGTGAACGGCGTCAGGCCCGCCGCCATGCCGG
AGTCTTGACTCAGTTTGTCGAGATGATGACCAACTTGCCGCTGAACACAA
CAACGGCCACGGCACCAGCCGAACCGCAGAAACCGAAGGCTGCAGAACAA
ACTGAAAGTCCTCCACAAGCTGAGCCCACTGTTACCGCTGAAAAGGCAGC
TGAATCCGAGGCCAAACCAACTGAGCCGAAGAAGGTTAACACTGATCAAA
GTGTCCCTAGAACCGAAGATCCAGTGACGACTCCACGTTCCACTCAGCCA
ACTACTCCAGTGATTAATCTGGATAACATTTCGCAGATTGTGCCACCCGA
GTACATGAGTGCTGGCATCGAAATCCTTAATAACTTCAGCGAAATGTTTT
CCAAGATTATCGATACCACTGAGGGCGGTGATTCGGGAATTTTTGCGCCC
TCAACGACTCCCAGTGCTGAGAATAAGAAACCAGAAGAGCAGGGTCAATC
CAGTGGCCAGTCGGGGGCATCCTCGGCCAACCAGTCAGCTGTTCCCTCTG
CCGCTCCATCGGCTAATCAGTCTAATGTCCCATCTGCTAACCAGTCGGCC
ACTCCATCAATTTCTGGTTCGATCCCTGATGCTCAGCTTGAGACAGAGCC
CCTGAATCCTAAGCCATCGGAAACCACCACCGAAACAGAGCAGGAAAGAC
GCCGTTCAGACAGCTTGGATCCAGAGTGGCAGCTTATTGACAATGCATAC
TCTGCAAACAATAGTAACTTGATCAATCTGGACACAACCAATCCCACTGC
TGCTCCTCAGGAGCCGGTGCGTGATTTTGGTCAGCTGGGCGAACTATTGC
GTCAGCACATGAATGAGGAGGCTCGCGTGGAGCAGGCTTCGGCCAACACC
CAGACTGCTCAAGTTGATACGGTGAGTACATCGACCTCGACCACATCGGT
GACCACCAATAGCGTCGGCACCTCCCCAGCAGCTCCCGACGACAAGCGCA
CGGTCCCCGTCTACCACACTGATGAAAGCATCAATAAATCGATCCATGCC
ATGATGGCCATGGGTTTCAGCAACGAGGGCGCCTGGCTAACCCAGCTCCT
AGAGTCGGTTCAGGGCAATATCTCAGCTGCCTTGGACGTAATGAACGTAT
CGCAGAACCGCAACGCAAGCTTTCTAGACCAT

BO10640.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
ref(2)P-RB 1800 CG10360-PB 1..1797 18..1814 8985 100 Plus
ref(2)P-RA 1800 CG10360-PA 1..1797 18..1814 8985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
ref(2)P-RB 2395 CG10360-RB 345..2146 13..1814 8995 99.9 Plus
ref(2)P-RA 2305 CG10360-RA 345..2146 13..1814 8995 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19543619..19545101 189..1671 7415 100 Plus
2L 23513712 2L 19542812..19542988 13..189 870 99.4 Plus
2L 23513712 2L 19545156..19545299 1671..1814 720 100 Plus
Blast to na_te.dros performed 2014-11-27 14:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
1731 4648 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). 1921..1976 694..752 116 71.2 Plus

BO10640.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:28:30 Download gff for BO10640.complete
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RB 177..1974 17..1816 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:24 Download gff for BO10640.complete
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RA 349..2146 17..1816 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-03 15:33:21 Download gff for BO10640.complete
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RB 173..1982 13..1822 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:44 Download gff for BO10640.complete
Subject Subject Range Query Range Percent Splice Strand
ref(2)P-RA 349..2146 17..1816 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:44 Download gff for BO10640.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19542816..19542988 17..189 100 -> Plus
2L 19543620..19545101 190..1671 100 -> Plus
2L 19545157..19545299 1672..1816 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:24 Download gff for BO10640.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19543620..19545101 190..1671 100 -> Plus
arm_2L 19545157..19545299 1672..1816 98   Plus
arm_2L 19542816..19542988 17..189 100 -> Plus

BO10640.pep Sequence

Translation from 17 to 1832

> BO10640.pep
MPEKLLKITYQGAGPQKKINAYLRMPSQNYTILRREIELYLFQERQLPKC
DVRTFWIDADKDEIEIVNQNDYEIFLAKCESNMHVQVAPLAPVEEPKATK
QEGSSANAEAPSVDDPSNFTIHDAVECDGCGLAPLIGFRYKCVQCSNYDL
CQKCELAHKHPEHLMLRMPTNNGPGMVDAWFTGPGLGRRSGRRSRGHCPF
QETNQADPAGEPARDSRRERRQARRHAGVLTQFVEMMTNLPLNTTTATAP
AEPQKPKAAEQTESPPQAEPTVTAEKAAESEAKPTEPKKVNTDQSVPRTE
DPVTTPRSTQPTTPVINLDNISQIVPPEYMSAGIEILNNFSEMFSKIIDT
TEGGDSGIFAPSTTPSAENKKPEEQGQSSGQSGASSANQSAVPSAAPSAN
QSNVPSANQSATPSISGSIPDAQLETEPLNPKPSETTTETEQERRRSDSL
DPEWQLIDNAYSANNSNLINLDTTNPTAAPQEPVRDFGQLGELLRQHMNE
EARVEQASANTQTAQVDTVSTSTSTTSVTTNSVGTSPAAPDDKRTVPVYH
TDESINKSIHAMMAMGFSNEGAWLTQLLESVQGNISAALDVMNVSQNRNA
SFLDH

BO10640.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:49:27
Subject Length Description Subject Range Query Range Score Percent Strand
ref(2)P-PB 599 CG10360-PB 1..599 1..599 3119 100 Plus
ref(2)P-PA 599 CG10360-PA 1..599 1..599 3119 100 Plus
Muc68D-PB 1514 CG6004-PB 521..904 211..582 164 21.7 Plus