Clone Sequence Records
BO10645.3prime Sequence
924 bp (817 high quality bases) assembled on 2006-04-19
> BO10645.3prime
ATGGTCTAGAAAGCTTGCTTTGACCTGGCCATTGGGCGCCAGAGGCGTGC
CCTGCTCCGCATCCTCCTTATTGTCCCGTGGGGAGTCCCACCATTGCACC
TCCGTGCGTCCAAATATGACGAAGAGAAGATTGCCCAAGAAGTAGAAGGC
GGCAGCCAGCAGGAACACCAATCGCCACTCAGTTACGCTTGTCTCATCGA
CGACAATCTGTCCCACGATCACTGGTGCGATTCCACTCATCACGTTTGCC
GCACAATTCGTAATGCCCATCAGGGTTCCGGCGTAATTCGGGGACAGATC
GATGTGGTTCACCTGGAAGCCCAGATAGGTGGCTCCGCTGATTCCCACCG
TTAGGGTGAGCAGTGTTACCGCCAGTGGAGCATTATCCGCCGGCACATAA
CCTAGCGCGATCAGCGAGAGCATAGGTATCCAATGGCCAATGCTGTTGAA
AATCTTGCGGTTGAAGGACAGAGACATGCCTTCCTTCTTTTGGAGCACTT
TGGATAGCCAGACGAAAAAGAAGCTGAGGAGCAGCATCACCATGTAGGGT
AGGGAGGAGAGCAGCGCACCCTTCTTGATGTCCACGTGGTAGATCTTCTT
CATGTACGTGGGAATCTGCATGAGCAGCAGCCAGTAACCGAAAATGTGGG
TGCAGTGCACCACCAGCAGAGACAGGAAGGGCAGGGAACTAAAGATGGCC
TTCCAGGGCGTGGGTGCCAGTTTCTCGGCGGATTGCATCTTGCCATCGCT
CCGCGAATCCGTAATGTACTTCAGCTCTCCGGGCGAAATCAGACGGTGTT
CCTCCGGCGTGCTGGCCGAGAATAGGTACCAGAAAACCATCCAAATAAAG
CCGCATGCTCCGCCAAATAGAAGATACTCGGCCAGCCAAAGACGGAGTCG
GGAATGAAAACGCTAGTGGCCAGC
BO10645.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15095-PB | 1494 | l(2)08717-RB | 646..1491 | 864..19 | 4230 | 100 | Minus |
CG15095-PA | 1494 | l(2)08717-RA | 646..1491 | 864..19 | 4230 | 100 | Minus |
CG15095-PB | 1494 | l(2)08717-RB | 585..646 | 924..863 | 235 | 95.1 | Minus |
CG15095-PA | 1494 | l(2)08717-RA | 585..646 | 924..863 | 235 | 95.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:14:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)08717-RC | 2337 | CG15095-RC | 924..1830 | 924..19 | 4465 | 99.6 | Minus |
l(2)08717-RA | 2048 | CG15095-RA | 924..1830 | 924..19 | 4465 | 99.6 | Minus |
l(2)08717-RB | 2999 | CG15095-RB | 1875..2781 | 924..19 | 4465 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:14:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18797716..18798448 | 193..924 | 3570 | 99.5 | Plus |
2R | 25286936 | 2R | 18797482..18797657 | 19..194 | 880 | 100 | Plus |
2R | 25286936 | 2R | 18795124..18795209 | 248..333 | 250 | 86 | Plus |
Blast to na_te.dros performed on 2015-02-06 17:14:46 has no hits.
BO10645.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:06 Download gff for
BO10645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15095-PB | 585..1494 | 18..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:00:37 Download gff for
BO10645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15095-PA | 585..1494 | 18..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:30:45 Download gff for
BO10645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)08717-RB | 1875..2787 | 13..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:27:27 Download gff for
BO10645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)08717-RB | 1875..2787 | 13..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:27:27 Download gff for
BO10645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18797488..18797655 | 25..192 | 100 | <- | Plus |
2R | 18797716..18798448 | 193..924 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:30:45 Download gff for
BO10645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14684993..14685160 | 25..192 | 100 | <- | Plus |
arm_2R | 14685221..14685953 | 193..924 | 99 | | Plus |
BO10645.5prime Sequence
819 bp (817 high quality bases) assembled on 2006-04-19
> BO10645.5prime
GAAGTTATCAGTCGACATGACAACTGCATTGACCATGGTGAAAACGGGTG
GTAAATACGCCAACGAGAAATTCTTCGGGGTGAGGCATGTGCAGTGCATC
CTGTGCTTCTTCTGCCTCGCGATGAGCTACGCTTGGCGGGTGAACCTCAG
TGTGGCCCTGGTGGCCATGACGGACAACAGCACCTCCCTAGCTCAGAACA
ACACCAATACCGGAGTGGCGCCAAGCGAACCCGGTTTTGATTTCTTTAAT
TCCGAGCGCTACTACAACTTCACCCAGAAGGAGAAGGGCAACCTGCAGGC
CAGTTTCTTCTTTGGCTACATCGTGACCCAAGTGCCAGGTGGTTATATCG
CCCAGCGCTATGGAGCCAAGACCATGCTGATGTACGGATTGGGTATAGCC
GCTTTGATCACGATGCTCTCGCCGATGTCCCTGCAATTCGGATGGGTCGC
CCTTGCCGTGATGCGATTCGTGATGGGCCTGGCCCAGGGTGCAGTACATC
CGGCCACGCATGCGCTTTTGGCCAAGTGGTCGCCCGCGGATGAGCGAGGA
ATGCTGGGAACACTCTGCTACTCGGGCGCCCAGTTCGGAACGGTGGTGAT
GCTGGCCACTAGCGGTTTCATTGCCGACTCCGTCTTGGGCTGGCCGAGTA
TCTTCTATTTGGGCGGAGCATGCGGCTTTATTTGGATGGTTTTCTGGTAC
CTATTCTCGGCCAGCACGCCGGAGGAACACCGTCTGATTTCGCCCGGAGA
GCTGAAGTACATTACGGATTCGCGGAGCGATGGCAAGATGCAATCCGCCG
AGAAACTGGCACCCACGCC
BO10645.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15095-PB | 1494 | l(2)08717-RB | 1..803 | 17..819 | 4015 | 100 | Plus |
CG15095-PA | 1494 | l(2)08717-RA | 1..803 | 17..819 | 4015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)08717-RC | 2337 | CG15095-RC | 338..1142 | 15..819 | 4025 | 100 | Plus |
l(2)08717-RA | 2048 | CG15095-RA | 338..1142 | 15..819 | 4025 | 100 | Plus |
l(2)08717-RB | 2999 | CG15095-RB | 1289..2093 | 15..819 | 4025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18798230..18798794 | 819..255 | 2825 | 100 | Minus |
2R | 25286936 | 2R | 18799073..18799264 | 256..65 | 960 | 100 | Minus |
2R | 25286936 | 2R | 18802018..18802068 | 65..15 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:31:35 has no hits.
BO10645.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:07 Download gff for
BO10645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15095-PB | 1..803 | 17..819 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:00:39 Download gff for
BO10645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15095-PA | 1..803 | 17..819 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:35:39 Download gff for
BO10645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)08717-RB | 1286..2093 | 9..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:02:16 Download gff for
BO10645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)08717-RB | 1286..2093 | 9..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:02:16 Download gff for
BO10645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18798230..18798792 | 257..819 | 100 | <- | Minus |
2R | 18799073..18799263 | 66..256 | 100 | <- | Minus |
2R | 18802018..18802071 | 9..65 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:35:39 Download gff for
BO10645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14685735..14686297 | 257..819 | 100 | <- | Minus |
arm_2R | 14686578..14686768 | 66..256 | 100 | <- | Minus |
arm_2R | 14689523..14689576 | 9..65 | 94 | | Minus |
BO10645.complete Sequence
1525 bp (1525 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631824
> BO10645.complete
GAAGTTATCAGTCGACATGACAACTGCATTGACCATGGTGAAAACGGGTG
GTAAATACGCCAACGAGAAATTCTTCGGGGTGAGGCATGTGCAGTGCATC
CTGTGCTTCTTCTGCCTCGCGATGAGCTACGCTTGGCGGGTGAACCTCAG
TGTGGCCCTGGTGGCCATGACGGACAACAGCACCTCCCTAGCTCAGAACA
ACACCAATACCGGAGTGGCGCCAAGCGAACCCGGTTTTGATTTCTTTAAT
TCCGAGCGCTACTACAACTTCACCCAGAAGGAGAAGGGCAACCTGCAGGC
CAGTTTCTTCTTTGGCTACATCGTGACCCAAGTGCCAGGTGGTTATATCG
CCCAGCGCTATGGAGCCAAGACCATGCTGATGTACGGATTGGGTATAGCC
GCTTTGATCACGATGCTCTCGCCGATGTCCCTGCAATTCGGATGGGTCGC
CCTTGCCGTGATGCGATTCGTGATGGGCCTGGCCCAGGGTGCAGTACATC
CGGCCACGCATGCGCTTTTGGCCAAGTGGTCGCCCGCGGATGAGCGAGGA
ATGCTGGGAACACTCTGCTACTCGGGCGCCCAGTTCGGAACGGTGGTGAT
GCTGGCCACTAGCGGTTTCATTGCCGACTCCGTCTTGGGCTGGCCGAGTA
TCTTCTATTTGGGCGGAGCATGCGGCTTTATTTGGATGGTTTTCTGGTAC
CTATTCTCGGCCAGCACGCCGGAGGAACACCGTCTGATTTCGCCCGGAGA
GCTGAAGTACATTACGGATTCGCGGAGCGATGGCAAGATGCAATCCGCCG
AGAAACTGGCACCCACGCCCTGGAAGGCCATCTTTAGTTCCCTGCCCTTC
CTGTCTCTGCTGGTGGTGCACTGCACCCACATTTTCGGTTACTGGCTGCT
GCTCATGCAGATTCCCACGTACATGAAGAAGATCTACCACGTGGACATCA
AGAAGGGTGCGCTGCTCTCCTCCCTACCCTACATGGTGATGCTGCTCCTC
AGCTTCTTTTTCGTCTGGCTATCCAAAGTGCTCCAAAAGAAGGAAGGCAT
GTCTCTGTCCTTCAACCGCAAGATTTTCAACAGCATTGGCCATTGGATAC
CTATGCTCTCGCTGATCGCGCTAGGTTATGTGCCGGCGGATAATGCTCCA
CTGGCGGTAACACTGCTCACCCTAACGGTGGGAATCAGCGGAGCCACCTA
TCTGGGCTTCCAGGTGAACCACATCGATCTGTCCCCGAATTACGCCGGAA
CCCTGATGGGCATTACGAATTGTGCGGCAAACGTGATGAGTGGAATCGCA
CCAGTGATCGTGGGACAGATTGTCGTCGATGAGACAAGCGTAACTGAGTG
GCGATTGGTGTTCCTGCTGGCTGCCGCCTTCTACTTCTTGGGCAATCTTC
TCTTCGTCATATTTGGACGCACGGAGGTGCAATGGTGGGACTCCCCACGG
GACAATAAGGAGGATGCGGAGCAGGGCACGCCTCTGGCGCCCAATGGCCA
GGTCAAAGCAAGCTTTCTAGACCAT
BO10645.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)08717-RC | 1494 | CG15095-PC | 1..1491 | 17..1507 | 7455 | 100 | Plus |
l(2)08717-RA | 1494 | CG15095-PA | 1..1491 | 17..1507 | 7455 | 100 | Plus |
l(2)08717-RB | 1494 | CG15095-PB | 1..1491 | 17..1507 | 7455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)08717-RC | 2337 | CG15095-RC | 338..1830 | 15..1507 | 7465 | 100 | Plus |
l(2)08717-RA | 2048 | CG15095-RA | 338..1830 | 15..1507 | 7465 | 100 | Plus |
l(2)08717-RB | 2999 | CG15095-RB | 1289..2781 | 15..1507 | 7465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18797716..18798794 | 1333..255 | 5395 | 100 | Minus |
2R | 25286936 | 2R | 18799073..18799264 | 256..65 | 960 | 100 | Minus |
2R | 25286936 | 2R | 18797482..18797657 | 1507..1332 | 880 | 100 | Minus |
2R | 25286936 | 2R | 18802018..18802068 | 65..15 | 255 | 100 | Minus |
2R | 25286936 | 2R | 18795124..18795209 | 1278..1193 | 250 | 86 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:02:26 has no hits.
BO10645.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:17 Download gff for
BO10645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)08717-RA | 1..1494 | 17..1508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:44 Download gff for
BO10645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)08717-RA | 329..1830 | 9..1513 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:10 Download gff for
BO10645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)08717-RB | 1291..2781 | 17..1509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:17 Download gff for
BO10645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)08717-RA | 329..1830 | 9..1513 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:54 Download gff for
BO10645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)08717-RB | 1291..2781 | 17..1509 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:54 Download gff for
BO10645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18797480..18797655 | 1334..1509 | 98 | <- | Minus |
2R | 18797716..18798792 | 257..1333 | 100 | <- | Minus |
2R | 18799073..18799263 | 66..256 | 100 | <- | Minus |
2R | 18802018..18802066 | 17..65 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:10 Download gff for
BO10645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14684985..14685160 | 1334..1509 | 98 | <- | Minus |
arm_2R | 14685221..14686297 | 257..1333 | 100 | <- | Minus |
arm_2R | 14686578..14686768 | 66..256 | 100 | <- | Minus |
arm_2R | 14689523..14689571 | 17..65 | 100 | | Minus |
BO10645.pep Sequence
Translation from 16 to 1525
> BO10645.pep
MTTALTMVKTGGKYANEKFFGVRHVQCILCFFCLAMSYAWRVNLSVALVA
MTDNSTSLAQNNTNTGVAPSEPGFDFFNSERYYNFTQKEKGNLQASFFFG
YIVTQVPGGYIAQRYGAKTMLMYGLGIAALITMLSPMSLQFGWVALAVMR
FVMGLAQGAVHPATHALLAKWSPADERGMLGTLCYSGAQFGTVVMLATSG
FIADSVLGWPSIFYLGGACGFIWMVFWYLFSASTPEEHRLISPGELKYIT
DSRSDGKMQSAEKLAPTPWKAIFSSLPFLSLLVVHCTHIFGYWLLLMQIP
TYMKKIYHVDIKKGALLSSLPYMVMLLLSFFFVWLSKVLQKKEGMSLSFN
RKIFNSIGHWIPMLSLIALGYVPADNAPLAVTLLTLTVGISGATYLGFQV
NHIDLSPNYAGTLMGITNCAANVMSGIAPVIVGQIVVDETSVTEWRLVFL
LAAAFYFLGNLLFVIFGRTEVQWWDSPRDNKEDAEQGTPLAPNGQVKASF
LDH
BO10645.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)08717-PC | 497 | CG15095-PC | 1..497 | 1..497 | 2608 | 100 | Plus |
l(2)08717-PA | 497 | CG15095-PA | 1..497 | 1..497 | 2608 | 100 | Plus |
l(2)08717-PB | 497 | CG15095-PB | 1..497 | 1..497 | 2608 | 100 | Plus |
MFS15-PA | 497 | CG15094-PA | 24..469 | 20..476 | 1201 | 51.2 | Plus |
CG15096-PB | 475 | CG15096-PB | 2..459 | 5..477 | 1159 | 49.4 | Plus |