Clone Sequence Records
BO10647.3prime Sequence
882 bp (763 high quality bases) assembled on 2006-04-19
> BO10647.3prime
ATGGTCTAGAAAGCTTGCAGAGTAAATTGTTATAACTTCTCGGCCTCCTC
CGCGAACCATTAACACTTTTTCAAGGCCCTCTGTTAATACCTCCAGAAAT
TCCATATAATTTCTTTCACGCTCCGCTCTCACTTCCCTAGGTGGTCCAGG
TAGATTCATTATGACCAACTGGGCGTCCTGTGACTTTTCTACAATAACCT
CGTTTAGTTTTATTGCTGTGTGCATGCGACGAACGTTGAACTCATCCGGT
TTCACACTGGACTTGAAGTCTCCGTCGGCTTTCTCTGTCGATTCATCCTT
GTTAGAAGTAGTTTCGGGTGTGTCCGCGTTCTCGGGACCATCCAAATCAA
TTGAGTTACGTTTCTCGTCGTTTTGAGAATCCACTTTGGAGTTTTCTTTC
TTATTTAAGCCTAATGCTCTCAGCATCTGATTACGCTGTTCCATCATCAG
GGTCCGCTCGTAGGTATAAGCGGAAATATCGCTGTTGTTCATCTCAACAA
CTTCAACATCGGCCTCGATTCGAAGATGGTAGAGGAATGTCTTTAGATCC
TTCTTCATTTGAATCGAGTTGTCCTCGATTTGAGCAACTGTGAAGATCCT
TAGCTTGCAATTGCGCCAGGTGCGATGTTGCTTCAGCAGGAAGGGCAGCA
ACATGAGCAGACCACCGTCGTGGACAATCCACCAGATATCAATGTTACCA
CCGATTTTGTGGTTTGATTCTGGATAGAAGTTGATGCCCTTGGGCACCAT
GAGGGCCATGTGGCAGGCGGCCACCGTGCGGACCGTTTGGATGAAGGTCT
TCCAGCTGTTCCTGCCCTCCTGTCGCCCGCTGTACGGCCATCCGATGATG
ACTGTGTTGGGCTTCATGCCCCCCAGTCCGAT
BO10647.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5594-PB | 3087 | CG5594-RB | 2221..3084 | 882..19 | 4295 | 99.8 | Minus |
| CG5594-PA | 3132 | CG5594-RA | 2266..3129 | 882..19 | 4295 | 99.8 | Minus |
| CG5594-PD | 3225 | CG5594-RD | 2266..2767 | 882..381 | 2485 | 99.8 | Minus |
| CG5594-PC | 3180 | CG5594-RC | 2221..2722 | 882..381 | 2485 | 99.8 | Minus |
| CG5594-PD | 3225 | CG5594-RD | 2860..3222 | 381..19 | 1815 | 100 | Minus |
| CG5594-PC | 3180 | CG5594-RC | 2815..3177 | 381..19 | 1815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:04:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kcc-RB | 3528 | CG5594-RB | 2505..3368 | 882..19 | 4305 | 99.9 | Minus |
| kcc-RA | 3543 | CG5594-RA | 2520..3383 | 882..19 | 4305 | 99.9 | Minus |
| kcc-RC | 3544 | CG5594-RC | 2428..2929 | 882..381 | 2495 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23922641..23922856 | 705..490 | 1080 | 100 | Minus |
| 2R | 25286936 | 2R | 23922402..23922578 | 882..706 | 870 | 99.4 | Minus |
| 2R | 25286936 | 2R | 23924616..23924755 | 247..108 | 700 | 100 | Minus |
| 2R | 25286936 | 2R | 23924415..23924554 | 382..243 | 685 | 99.3 | Minus |
| 2R | 25286936 | 2R | 23922921..23923030 | 490..381 | 550 | 100 | Minus |
| 2R | 25286936 | 2R | 23924818..23924906 | 107..19 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:03:58 has no hits.
BO10647.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:08 Download gff for
BO10647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5594-PA | 2266..3132 | 15..882 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:00:40 Download gff for
BO10647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5594-PA | 2266..3132 | 15..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:54:38 Download gff for
BO10647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kcc-RA | 2520..3393 | 10..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:15 Download gff for
BO10647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kcc-RA | 2520..3393 | 10..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:15 Download gff for
BO10647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23922402..23922578 | 706..882 | 99 | -> | Minus |
| 2R | 23922641..23922856 | 490..705 | 100 | -> | Minus |
| 2R | 23922922..23923029 | 382..489 | 100 | -> | Minus |
| 2R | 23924416..23924549 | 248..381 | 100 | -> | Minus |
| 2R | 23924616..23924755 | 108..247 | 100 | -> | Minus |
| 2R | 23924818..23924916 | 10..107 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:54:38 Download gff for
BO10647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19809925..19810101 | 706..882 | 99 | -> | Minus |
| arm_2R | 19810164..19810379 | 490..705 | 100 | -> | Minus |
| arm_2R | 19810445..19810552 | 382..489 | 100 | -> | Minus |
| arm_2R | 19811939..19812072 | 248..381 | 100 | -> | Minus |
| arm_2R | 19812139..19812278 | 108..247 | 100 | -> | Minus |
| arm_2R | 19812341..19812439 | 10..107 | 95 | | Minus |
BO10647.5prime Sequence
881 bp (773 high quality bases) assembled on 2006-04-19
> BO10647.5prime
GAAGTTATCAGTCGACATGCAAAGTAACAGTGCAAAAGATGATTCGGATG
AAATGGAAATAATACCATCCGAACACAATGGTACAGTTCACGAAACCAAA
AATGAAGACTCAGGTGATATCCACAGGGCGGAGGAGAACCAGAAGTCCAG
CATCGACCCAAATCTATATCTGTACGACGATGATTTGGAGACCAGGCCCC
ATATATCAACGTTCATTTCATCAATTGCCAATTATGAGAACACGATACCA
GCGGCCACCGATCCCGATGCAAAGCCGGCAGCTCCATCGGCTCGAATGGG
TACCCTAATTGGAGTGTTCTTGCCATGCATTCAAAACATCTTTGGTGTCA
TATTGTTCATTCGGTTAACATGGGTTGTTGGAACGGCTGGCGCCGTGTGT
GGATTCCTGATTGTTCTGACCTGCTGCTGTGTGACCATGCTAACCGCGAT
CTCGATGTCGGCCATTGCAACGAACGGGGTGGTTCCGGCGGGCGGGAGTT
ACTTCATGATATCACGATCCCTGGGCCCTGAATTCGGCGGAGCGGTGGGA
ATGTTGTTCTATACGGGCACCACGCTAGCAGCGGCGATGTACATCGTTGG
TGCCGTGGAAATCGTATTGACATACATGGCGCCGTGGGCATCGATATTTG
GGGACTTCACCAAGGACGCTGACGCGATGTACAACAATTTCAGGGTCTAC
GGCACTTTGCTGCTCATCTTTATGGGTCTCATTGTGTTCCTGGGCGTGAA
ATTCGTCAATAAGTTCGCGACGGTGGCCCTGGCCTGCGTCATCCTTTCGA
TAATAGCGGTGTATGTGGGAATATTTGACAATATCCATGGCAACGAAAAA
GCTATACATGTGTGTTCTGGGAAAACGACTC
BO10647.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5594-PB | 3087 | CG5594-RB | 1..833 | 17..849 | 4165 | 100 | Plus |
| CG5594-PC | 3180 | CG5594-RC | 1..833 | 17..849 | 4165 | 100 | Plus |
| CG5594-PD | 3225 | CG5594-RD | 136..878 | 107..849 | 3715 | 100 | Plus |
| CG5594-PA | 3132 | CG5594-RA | 136..878 | 107..849 | 3715 | 100 | Plus |
| CG5594-PB | 3087 | CG5594-RB | 830..864 | 847..881 | 175 | 100 | Plus |
| CG5594-PC | 3180 | CG5594-RC | 830..864 | 847..881 | 175 | 100 | Plus |
| CG5594-PD | 3225 | CG5594-RD | 875..909 | 847..881 | 175 | 100 | Plus |
| CG5594-PA | 3132 | CG5594-RA | 875..909 | 847..881 | 175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:29:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kcc-RC | 3544 | CG5594-RC | 206..1071 | 15..881 | 4310 | 99.9 | Plus |
| kcc-RB | 3528 | CG5594-RB | 283..1148 | 15..881 | 4310 | 99.9 | Plus |
| kcc-RG | 3675 | CG5594-RG | 283..1148 | 15..881 | 4310 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:29:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23911675..23911871 | 106..302 | 985 | 100 | Plus |
| 2R | 25286936 | 2R | 23912187..23912321 | 299..433 | 675 | 100 | Plus |
| 2R | 25286936 | 2R | 23912896..23913020 | 725..849 | 625 | 100 | Plus |
| 2R | 25286936 | 2R | 23912728..23912836 | 619..727 | 545 | 100 | Plus |
| 2R | 25286936 | 2R | 23912531..23912634 | 516..619 | 520 | 100 | Plus |
| 2R | 25286936 | 2R | 23911459..23911551 | 15..107 | 465 | 100 | Plus |
| 2R | 25286936 | 2R | 23912383..23912466 | 433..516 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:29:15 has no hits.
BO10647.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:09 Download gff for
BO10647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5594-PC | 1..864 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:00:42 Download gff for
BO10647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5594-PC | 1..864 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:34:59 Download gff for
BO10647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kcc-RG | 279..1148 | 11..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:09:39 Download gff for
BO10647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kcc-RG | 279..1148 | 11..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:09:39 Download gff for
BO10647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23912532..23912634 | 517..619 | 100 | -> | Plus |
| 2R | 23912729..23912834 | 620..725 | 100 | -> | Plus |
| 2R | 23912897..23913026 | 726..856 | 99 | -> | Plus |
| 2R | 23913086..23913110 | 857..881 | 100 | | Plus |
| 2R | 23912188..23912321 | 300..433 | 100 | -> | Plus |
| 2R | 23912384..23912466 | 434..516 | 100 | -> | Plus |
| 2R | 23911455..23911551 | 11..107 | 97 | -> | Plus |
| 2R | 23911677..23911868 | 108..299 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:34:59 Download gff for
BO10647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19798978..19799074 | 11..107 | 97 | -> | Plus |
| arm_2R | 19799200..19799391 | 108..299 | 100 | -> | Plus |
| arm_2R | 19799711..19799844 | 300..433 | 100 | -> | Plus |
| arm_2R | 19799907..19799989 | 434..516 | 100 | -> | Plus |
| arm_2R | 19800055..19800157 | 517..619 | 100 | -> | Plus |
| arm_2R | 19800252..19800357 | 620..725 | 100 | -> | Plus |
| arm_2R | 19800420..19800549 | 726..856 | 99 | -> | Plus |
| arm_2R | 19800609..19800633 | 857..881 | 100 | | Plus |
BO10647.complete Sequence
3118 bp (3118 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631825
> BO10647.complete
GAAGTTATCAGTCGACATGCAAAGTAACAGTGCAAAAGATGATTCGGATG
AAATGGAAATAATACCATCCGAACACAATGGTACAGTTCACGAAACCAAA
AATGAAGACTCAGGTGATATCCACAGGGCGGAGGAGAACCAGAAGTCCAG
CATCGACCCAAATCTATATCTGTACGACGATGATTTGGAGACCAGGCCCC
ATATATCAACGTTCATTTCATCAATTGCCAATTATGAGAACACGATACCA
GCGGCCACCGATCCCGATGCAAAGCCGGCAGCTCCATCGGCTCGAATGGG
TACCCTAATTGGAGTGTTCTTGCCATGCATTCAAAACATCTTTGGTGTCA
TATTGTTCATTCGGTTAACATGGGTTGTTGGAACGGCTGGCGCCGTGTGT
GGATTCCTGATTGTTCTGACCTGCTGCTGTGTGACCATGCTAACCGCGAT
CTCGATGTCGGCCATTGCAACGAACGGGGTGGTTCCGGCGGGCGGGAGTT
ACTTCATGATATCACGATCCCTGGGCCCTGAATTCGGCGGAGCGGTGGGA
ATGTTGTTCTATACGGGCACCACGCTAGCAGCGGCGATGTACATCGTTGG
TGCCGTGGAAATCGTATTGACATACATGGCGCCGTGGGCATCGATATTTG
GGGACTTCACCAAGGACGCTGACGCGATGTACAACAATTTCAGGGTCTAC
GGCACTTTGCTGCTCATCTTTATGGGTCTCATTGTGTTCCTGGGCGTGAA
ATTCGTCAATAAGTTCGCGACGGTGGCCCTGGCCTGCGTCATCCTTTCGA
TAATAGCGGTGTATGTGGGAATATTTGACAATATCCATGGCAACGAAAAG
CTATACATGTGTGTTCTGGGAAAACGACTCTTGAAGGATATCCCGCTGGA
GAATTGCACAAAGGAAGACTCCTTCTTACGCGACATATACTGCCCAGATG
GTAAATGCGAGGAATACTACCTGGCCAATAACGTGACCAAAGTCAAGGGC
ATCAAGGGTTTGGCCAGTGGCGTGTTCTACGACAACATCTTCCCTTCGTT
CCTGGAGAAGGGCCAGTTCATATCCTACGGCAAGAGTGCAATTGACATTG
AGAACACTAGTGGAGAGTCATACAACCAGATCATGGCCGACATTACCACG
TCGTTCACCCTTCTTATCGGCATCTTCTTCCCATCGGTCACAGGCATCAT
GGCTGGATCCAATCGATCGGGCGACCTGGCTGACGCCCAGAAGAGCATAC
CCATCGGAACGATATGTGCCATTCTGACCACCAGCACAGTCTACTTGTCC
AGCGTTATGTTCTTCGCCGGCACAGTGGACAATCTCCTGTTGAGGGACAA
ATTCGGTCAGTCTATTGGTGGCAAGCTGGTGGTGGCCAATATTGCCTGGC
CAAATCAGTGGGTCATTCTGATTGGCTCCTTCCTCTCCACCTTGGGCGCT
GGTCTGCAGAGTTTGACTGGAGCACCCCGACTGCTGCAGGCGATTGCGAG
GGATGAGATCATCCCCTTCCTGGCTCCATTTGCCAAGTCTTCGAAGCGTG
GCGAACCCACCCGTGCGCTGCTCCTGACCATTGTCATTTGCCAGTGCGGC
ATCCTGTTGGGCAACGTGGACTTGCTGGCTCCTCTGCTGTCCATGTTCTT
CCTCATGTGCTACGGCTTTGTCAACCTGGCCTGCGCTGTGCAAACCCTGC
TGAGGACTCCCAACTGGAGACCGCGCTTCAAGTTCTACCACTGGAGCTTG
TCGCTCATCGGCCTGACGCTGTGCATATCAGTCATGATCATGACTTCCTG
GTATTTCGCACTGATTGCTATGGGAATGGCCATCATTATCTACAAATACA
TAGAGTACCGCGGTGCTGAGAAGGAGTGGGGTGATGGCATTCGTGGAATG
GCCCTGACCGCCGCCAGGTACTCGCTACTCCGTCTGGAGGAAGGCCCACC
GCATACGAAAAATTGGCGTCCCCAAATTTTGGTGCTTTCGAAGCTCAACG
ACAACCTCTTGCCAAAATACAGGAAGATATTCTCCTTTGCCACCCAGCTG
AAAGCTGGCAAGGGATTGACGATTTGTGTGTCTGTGATAAAGGGCGACCA
CACTAAGATCACTAACAAAGCCGTGGATGCGAAGGCCACGCTGCGCAAGT
ACATGACCGACGAGAAGGTGAAGGGCTTCTGTGATGTCCTGGTAGCCCAG
CAGATTGGCGAGGGCCTCAGCTCAGTCATCCAAACCATCGGACTGGGGGG
CATGAAGCCCAACACAGTCATCATCGGATGGCCGTACAGCTGGCGACAGG
AGGGCAGGAACAGCTGGAAGACCTTCATCCAAACGGTCCGCACGGTGGCC
GCCTGCCACATGGCCCTCATGGTGCCCAAGGGCATCAACTTCTATCCAGA
ATCAAACCACAAAATCGGTGGTAACATTGATATCTGGTGGATTGTCCACG
ACGGTGGTCTGCTCATGTTGCTGCCCTTCCTGCTGAAGCAACATCGCACC
TGGCGCAATTGCAAGCTAAGGATCTTCACAGTTGCTCAAATCGAGGACAA
CTCGATTCAAATGAAGAAGGATCTAAAGACATTCCTCTACCATCTTCGAA
TCGAGGCCGATGTTGAAGTTGTTGAGATGAACAACAGCGATATTTCCGCT
TATACCTACGAGCGGACCCTGATGATGGAACAGCGTAATCAGATGCTGAG
AGCATTAGGCTTAAATAAGAAAGAAAACTCCAAAGTGGATTCTCAAAACG
ACGAGAAACGTAACTCAATTGATTTGGATGGTCCCGAGAACGCGGACACA
CCCGAAACTACTTCTAACAAGGATGAATCGACAGAGAAAGCCGACGGAGA
CTTCAAGTCCAGTGTGAAACCGGATGAGTTCAACGTTCGTCGCATGCACA
CAGCAATAAAACTAAACGAGGTTATTGTAGAAAAGTCACAGGACGCCCAG
TTGGTCATAATGAATCTACCTGGACCACCTAGGGAAGTGAGAGCGGAGCG
TGAAAGAAATTATATGGAATTTCTGGAGGTATTAACAGAGGGCCTTGAAA
AAGTGTTAATGGTTCGCGGAGGAGGCCGAGAAGTTATAACAATTTACTCT
GCAAGCTTTCTAGACCAT
BO10647.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:30:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kcc-RB | 3087 | CG5594-PB | 1..3084 | 17..3100 | 15420 | 100 | Plus |
| kcc-RA | 3132 | CG5594-PA | 136..3129 | 107..3100 | 14970 | 100 | Plus |
| kcc-RC | 3180 | CG5594-PC | 1..2722 | 17..2738 | 13610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:30:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kcc-RB | 3528 | CG5594-RB | 283..3368 | 15..3100 | 15430 | 100 | Plus |
| kcc-RA | 3543 | CG5594-RA | 390..3383 | 107..3100 | 14970 | 100 | Plus |
| kcc-RC | 3544 | CG5594-RC | 206..2929 | 15..2738 | 13620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:30:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23921964..23922327 | 1863..2226 | 1820 | 100 | Plus |
| 2R | 25286936 | 2R | 23913758..23914018 | 1351..1611 | 1305 | 100 | Plus |
| 2R | 25286936 | 2R | 23914078..23914331 | 1610..1863 | 1270 | 100 | Plus |
| 2R | 25286936 | 2R | 23913267..23913487 | 974..1194 | 1105 | 100 | Plus |
| 2R | 25286936 | 2R | 23922641..23922856 | 2414..2629 | 1080 | 100 | Plus |
| 2R | 25286936 | 2R | 23911675..23911871 | 106..302 | 985 | 100 | Plus |
| 2R | 25286936 | 2R | 23922392..23922578 | 2227..2413 | 935 | 100 | Plus |
| 2R | 25286936 | 2R | 23913540..23913698 | 1192..1350 | 795 | 100 | Plus |
| 2R | 25286936 | 2R | 23924616..23924755 | 2872..3011 | 700 | 100 | Plus |
| 2R | 25286936 | 2R | 23924415..23924554 | 2737..2876 | 685 | 99.3 | Plus |
| 2R | 25286936 | 2R | 23912187..23912321 | 299..433 | 675 | 100 | Plus |
| 2R | 25286936 | 2R | 23912896..23913026 | 725..855 | 655 | 100 | Plus |
| 2R | 25286936 | 2R | 23913086..23913204 | 856..974 | 595 | 100 | Plus |
| 2R | 25286936 | 2R | 23922921..23923030 | 2629..2738 | 550 | 100 | Plus |
| 2R | 25286936 | 2R | 23912728..23912836 | 619..727 | 545 | 100 | Plus |
| 2R | 25286936 | 2R | 23912531..23912634 | 516..619 | 520 | 100 | Plus |
| 2R | 25286936 | 2R | 23911459..23911551 | 15..107 | 465 | 100 | Plus |
| 2R | 25286936 | 2R | 23924818..23924906 | 3012..3100 | 445 | 100 | Plus |
| 2R | 25286936 | 2R | 23912383..23912466 | 433..516 | 420 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:30:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 2316..2357 | 817..858 | 120 | 76.2 | Plus |
BO10647.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:12 Download gff for
BO10647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5594-RB | 1..3087 | 17..3104 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:53:57 Download gff for
BO10647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5594-RB | 369..3452 | 17..3102 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:15 Download gff for
BO10647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kcc-RB | 285..3368 | 17..3102 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:12 Download gff for
BO10647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5594-RB | 363..3462 | 11..3109 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:19:31 Download gff for
BO10647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kcc-RB | 285..3368 | 17..3102 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:19:31 Download gff for
BO10647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23912729..23912834 | 620..725 | 100 | -> | Plus |
| 2R | 23912384..23912466 | 434..516 | 100 | -> | Plus |
| 2R | 23912532..23912634 | 517..619 | 100 | -> | Plus |
| 2R | 23911461..23911551 | 17..107 | 100 | -> | Plus |
| 2R | 23911677..23911868 | 108..299 | 100 | -> | Plus |
| 2R | 23912188..23912321 | 300..433 | 100 | -> | Plus |
| 2R | 23912897..23913026 | 726..855 | 100 | -> | Plus |
| 2R | 23913086..23913204 | 856..974 | 100 | -> | Plus |
| 2R | 23913268..23913486 | 975..1193 | 100 | -> | Plus |
| 2R | 23913542..23913698 | 1194..1350 | 100 | -> | Plus |
| 2R | 23913758..23914017 | 1351..1610 | 100 | -> | Plus |
| 2R | 23914079..23914331 | 1611..1863 | 100 | -> | Plus |
| 2R | 23921965..23922327 | 1864..2226 | 100 | -> | Plus |
| 2R | 23922392..23922578 | 2227..2413 | 100 | -> | Plus |
| 2R | 23922641..23922856 | 2414..2629 | 100 | -> | Plus |
| 2R | 23922922..23923029 | 2630..2737 | 100 | -> | Plus |
| 2R | 23924416..23924549 | 2738..2871 | 100 | -> | Plus |
| 2R | 23924616..23924755 | 2872..3011 | 100 | -> | Plus |
| 2R | 23924818..23924906 | 3012..3102 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:15 Download gff for
BO10647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19809915..19810101 | 2227..2413 | 100 | -> | Plus |
| arm_2R | 19810164..19810379 | 2414..2629 | 100 | -> | Plus |
| arm_2R | 19810445..19810552 | 2630..2737 | 100 | -> | Plus |
| arm_2R | 19811939..19812072 | 2738..2871 | 100 | -> | Plus |
| arm_2R | 19801602..19801854 | 1611..1863 | 100 | -> | Plus |
| arm_2R | 19812139..19812278 | 2872..3011 | 100 | -> | Plus |
| arm_2R | 19812341..19812429 | 3012..3102 | 97 | | Plus |
| arm_2R | 19809488..19809850 | 1864..2226 | 100 | -> | Plus |
| arm_2R | 19800791..19801009 | 975..1193 | 100 | -> | Plus |
| arm_2R | 19801065..19801221 | 1194..1350 | 100 | -> | Plus |
| arm_2R | 19801281..19801540 | 1351..1610 | 100 | -> | Plus |
| arm_2R | 19798984..19799074 | 17..107 | 100 | -> | Plus |
| arm_2R | 19799200..19799391 | 108..299 | 100 | -> | Plus |
| arm_2R | 19799711..19799844 | 300..433 | 100 | -> | Plus |
| arm_2R | 19799907..19799989 | 434..516 | 100 | -> | Plus |
| arm_2R | 19800055..19800157 | 517..619 | 100 | -> | Plus |
| arm_2R | 19800252..19800357 | 620..725 | 100 | -> | Plus |
| arm_2R | 19800420..19800549 | 726..855 | 100 | -> | Plus |
| arm_2R | 19800609..19800727 | 856..974 | 100 | -> | Plus |
BO10647.pep Sequence
Translation from 16 to 3118
> BO10647.pep
MQSNSAKDDSDEMEIIPSEHNGTVHETKNEDSGDIHRAEENQKSSIDPNL
YLYDDDLETRPHISTFISSIANYENTIPAATDPDAKPAAPSARMGTLIGV
FLPCIQNIFGVILFIRLTWVVGTAGAVCGFLIVLTCCCVTMLTAISMSAI
ATNGVVPAGGSYFMISRSLGPEFGGAVGMLFYTGTTLAAAMYIVGAVEIV
LTYMAPWASIFGDFTKDADAMYNNFRVYGTLLLIFMGLIVFLGVKFVNKF
ATVALACVILSIIAVYVGIFDNIHGNEKLYMCVLGKRLLKDIPLENCTKE
DSFLRDIYCPDGKCEEYYLANNVTKVKGIKGLASGVFYDNIFPSFLEKGQ
FISYGKSAIDIENTSGESYNQIMADITTSFTLLIGIFFPSVTGIMAGSNR
SGDLADAQKSIPIGTICAILTTSTVYLSSVMFFAGTVDNLLLRDKFGQSI
GGKLVVANIAWPNQWVILIGSFLSTLGAGLQSLTGAPRLLQAIARDEIIP
FLAPFAKSSKRGEPTRALLLTIVICQCGILLGNVDLLAPLLSMFFLMCYG
FVNLACAVQTLLRTPNWRPRFKFYHWSLSLIGLTLCISVMIMTSWYFALI
AMGMAIIIYKYIEYRGAEKEWGDGIRGMALTAARYSLLRLEEGPPHTKNW
RPQILVLSKLNDNLLPKYRKIFSFATQLKAGKGLTICVSVIKGDHTKITN
KAVDAKATLRKYMTDEKVKGFCDVLVAQQIGEGLSSVIQTIGLGGMKPNT
VIIGWPYSWRQEGRNSWKTFIQTVRTVAACHMALMVPKGINFYPESNHKI
GGNIDIWWIVHDGGLLMLLPFLLKQHRTWRNCKLRIFTVAQIEDNSIQMK
KDLKTFLYHLRIEADVEVVEMNNSDISAYTYERTLMMEQRNQMLRALGLN
KKENSKVDSQNDEKRNSIDLDGPENADTPETTSNKDESTEKADGDFKSSV
KPDEFNVRRMHTAIKLNEVIVEKSQDAQLVIMNLPGPPREVRAERERNYM
EFLEVLTEGLEKVLMVRGGGREVITIYSASFLDH
BO10647.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kcc-PB | 1028 | CG5594-PB | 1..1028 | 1..1028 | 5328 | 100 | Plus |
| kcc-PC | 1059 | CG5594-PC | 1..1059 | 1..1028 | 5286 | 97.1 | Plus |
| kcc-PG | 1077 | CG5594-PG | 1..1077 | 1..1028 | 5268 | 95.5 | Plus |
| kcc-PA | 1043 | CG5594-PA | 20..1043 | 7..1028 | 5182 | 97.9 | Plus |
| kcc-PD | 1074 | CG5594-PD | 20..1074 | 7..1028 | 5140 | 95.1 | Plus |
