Clone BO10649 Report

Search the DGRC for BO10649

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:106
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG5621-RA
Protein status:BO10649.pep: validated full length
Sequenced Size:2500

Clone Sequence Records

BO10649.3prime Sequence

877 bp (834 high quality bases) assembled on 2006-04-19

> BO10649.3prime
ATGGTCTAGAAAGCTTGCATCTCCAGGGCCACGGCGCCAGAGTCCTCGTC
CGCGTCCTGCACACACCCACACATGCACGAGCTGCCAGAGATTGAGATTA
GGCTGATCACTTACCGAACAAGCTCCCCCGCCGCGCTTCTCCTGCCACCA
CTTGGTCTTCATCTTGGTCAGCAGACCCTGCTCCTGCATCTCTAGAACAG
CCTGGCTCAACGTGTCCCTGTACGGCCAGTTCTTTCGCATGGCTATCCCG
TATCCCTTCTCGTCCAGCAATGCTCCCACCTGAGTGAGCGTGCATCGGCG
CTCTGTGATATACTCAATGGTGGTGGACTCCATGAGAAAGGCGTAGTTGG
AGTTCTCCACGCGATCAACTCCCTCCTGGTTGGTGTTGGTCATGTACTGG
GGATTATCCCTCATGAACTCGTACATCCGCTGGTAGGTGGGATAGTTTGA
TTCCTTAAAGAAGTTAAAGGTAGCTCCCCCAATTTTGGCCCCGTAGTTTA
CACCGCCCTTGTTCTTCGATAGGTCATCCGCATCATTGATGGGCGTTACC
AAAGACTCTACAGTGAGGAAAGCCGCCAGATTAGCAGTGTAAGAGGAGAC
CAAAATCAATGTGAAGAACCACCAGGAAGCGGCCACGGCCCGAGTGGAGT
AAGCCTTGGGAGCCAGTTCAGATCCTTGCTGAAGTAGAGCACCTATGGAG
AACCATAGACAGTTGGCGAAACTAAACTGATTCTCCAATTCCGTTGGCTC
CTCAATGCAGGGATACGGATTGTCCCACTCCGCCGGAGATAGCCTTCCCA
GCACGAACATGCTGATGGATACGCCCATGTAGGCCAGACCCAGCCAGAGC
CAAACCTCTCCTGAAAACGGGGACATG

BO10649.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5621-PA 2469 CG5621-RA 1608..2466 877..19 4295 100 Minus
CG5621-PB 2871 CG5621-RB 1608..2371 877..114 3820 100 Minus
CG5621-PB 2871 CG5621-RB 2370..2408 57..19 195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5621-RA 3640 CG5621-RA 1768..2626 877..19 4295 100 Minus
CG5621-RD 3008 CG5621-RD 1768..2531 877..114 3820 100 Minus
CG5621-RC 3011 CG5621-RC 1768..2531 877..114 3820 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20906746..20906974 459..231 1130 99.6 Minus
3R 32079331 3R 20906210..20906432 877..655 1115 100 Minus
3R 32079331 3R 20907038..20907249 230..19 1060 100 Minus
3R 32079331 3R 20906496..20906698 655..453 1015 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:22:53 has no hits.

BO10649.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:10 Download gff for BO10649.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5621-PA 1608..2469 18..877 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:00:43 Download gff for BO10649.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5621-PA 1608..2469 18..877 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:00:08 Download gff for BO10649.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5621-RA 1768..2626 19..877 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:09:06 Download gff for BO10649.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5621-RA 1768..2626 19..877 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:09:06 Download gff for BO10649.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20906496..20906697 454..655 100 -> Minus
3R 20906752..20906974 231..453 100 -> Minus
3R 20907038..20907249 19..230 100   Minus
3R 20906210..20906431 656..877 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:00:08 Download gff for BO10649.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16731932..16732153 656..877 100 -> Minus
arm_3R 16732218..16732419 454..655 100 -> Minus
arm_3R 16732474..16732696 231..453 100 -> Minus
arm_3R 16732760..16732971 19..230 100   Minus

BO10649.5prime Sequence

894 bp (861 high quality bases) assembled on 2006-04-19

> BO10649.5prime
GAAGTTATCAGTCGACATGTGGTTCGTGAAAATGATTTCAACAGAAGCGA
GTTTTCCACTTGGCTTCATCCTAACGAGCTTGCTATTGGCATTTCCCGGT
TGCCGAGGAGAGAGAACGAATGTGGGTCTCGTCTATGAGAACACCGATCC
GGATCTCGAGAAGATCTTCCACCTGGCCATCAGCAAGGCGAATGAGGAGA
ATGAGGATCTGCAACTGCACGGCGTGTCCGTCTCCATTGAGCCGGGAAAC
TCCTTCGAAACCTCCAAGAAGCTCTGCAAAATGCTAAGGCAAAATCTGGT
GGCAGTTTTCGGACCCACCTCGAATCTGGCCGCCCGTCACGCGATGAGCA
TCTGCGACGCCAAGGAGCTGCCATTTTTGGACACGCGCTGGGATTTTGGG
GCCCAGCTGCCGACCATCAATCTGCACCCACATCCAGCCACGCTGGGCGT
GGCCCTGCGGGATATGGTGGTGGCCCTGGGCTGGGAGAGCTTCACCATTA
TCTACGAGTCGGGCGAGTACTTGCCCACCGTGCGAGAGCTGCTGCAGATG
TACGGCACCGCTGGTCCCACGGTCACGGTCCGTCGCTATGAGCTGGATCT
GAACGGCAACTACCGGAATGTACTGCGGCGTATACGCAATGCGGATGATT
TCTCGTTTGTGGTTGTCGGATCCATGGCCACTCTGCCAGAGTTCTTCAAG
CAAGCCCAGCAGGTGGGTCTGGTGACCAGCGACTACCGCTATATTATCGG
CAACCTGGACTGGCACACCATGGACCTGGAGCCGTACCAACACGCCGGAA
CCAACATCACGGGTCTGCGCCTCGTCTCTCCGGATAGCGAACAGGTGCAG
GAGGTGGCTAAGGCACTCTACGAGAGCGAGGAACCCCTCCAAAA

BO10649.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5621-PB 2871 CG5621-RB 1..878 17..894 4365 99.8 Plus
CG5621-PA 2469 CG5621-RA 1..878 17..894 4365 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5621-RD 3008 CG5621-RD 161..1038 17..894 4375 99.9 Plus
CG5621-RC 3011 CG5621-RC 161..1038 17..894 4375 99.9 Plus
CG5621-RA 3640 CG5621-RA 161..1038 17..894 4375 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20902687..20903292 289..894 3015 99.8 Plus
3R 32079331 3R 20902424..20902588 125..289 825 100 Plus
3R 32079331 3R 20902116..20902226 17..127 555 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:49:02 has no hits.

BO10649.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:11 Download gff for BO10649.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5621-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:00:45 Download gff for BO10649.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5621-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:02:56 Download gff for BO10649.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5621-RA 153..1034 5..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:01 Download gff for BO10649.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5621-RA 153..1034 5..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:01 Download gff for BO10649.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20902108..20902224 5..125 95 -> Plus
3R 20902425..20902588 126..289 100 -> Plus
3R 20902688..20903288 290..890 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:02:56 Download gff for BO10649.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16727830..16727946 5..125 95 -> Plus
arm_3R 16728147..16728310 126..289 100 -> Plus
arm_3R 16728410..16729010 290..890 99   Plus

BO10649.complete Sequence

2500 bp (2500 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ638676

> BO10649.complete
GAAGTTATCAGTCGACATGTGGTTCGTGAAAATGATTTCAACAGAAGCGA
GTTTTCCACTTGGCTTCATCCTAACGAGCTTGCTATTGGCATTTCCCGGT
TGCCGAGGAGAGAGAACGAATGTGGGTCTCGTCTATGAGAACACCGATCC
GGATCTCGAGAAGATCTTCCACCTGGCCATCAGCAAGGCGAATGAGGAGA
ATGAGGATCTGCAACTGCACGGCGTGTCCGTCTCCATTGAGCCGGGAAAC
TCCTTCGAAACCTCCAAGAAGCTCTGCAAAATGCTAAGGCAAAATCTGGT
GGCAGTTTTCGGACCCACCTCGAATCTGGCCGCCCGTCACGCGATGAGCA
TCTGCGACGCCAAGGAGCTGCCATTTTTGGACACGCGCTGGGATTTTGGG
GCCCAGCTGCCGACCATCAATCTGCACCCACATCCAGCCACGCTGGGCGT
GGCCCTGCGGGATATGGTGGTGGCCCTGGGCTGGGAGAGCTTCACCATTA
TCTACGAGTCGGGCGAGTACTTGCCCACCGTGCGAGAGCTGCTGCAGATG
TACGGCACCGCTGGTCCCACGGTCACGGTCCGTCGCTATGAGCTGGATCT
GAACGGCAACTACCGGAATGTACTGCGGCGTATACGCAATGCGGATGATT
TCTCGTTTGTGGTTGTCGGATCCATGGCCACTCTGCCAGAGTTCTTCAAG
CAAGCCCAGCAGGTGGGTCTGGTGACCAGCGACTACCGCTATATTATCGG
CAACCTGGACTGGCACACCATGGACCTGGAGCCGTACCAACACGCCGGAA
CCAACATCACGGGTCTGCGCCTCGTCTCTCCGGATAGCGAACAGGTGCAG
GAGGTGGCTAAGGCACTCTACGAGAGCGAGGAACCCTTCCAAAACGTGTC
CTGCCCCCTGACCAACAGCATGGCCCTGGTCTACGATGGCGTCCAGCTTC
TGGCCGAGACCTACAAGCATGTGAACTTCCGGCCCGTGGCCCTCAGTTGT
AACGATGACAGTGCCTGGGACAAGGGCTACACGCTCGTCAACTACATGAA
GTCGCTAACGCTGAATGGCCTCACGGGACCCATTCGGTTTGACTACGAGG
GACTCCGCACGGATTTCAAGCTGGAAGTCATTGAGCTGGCCGTTTCGGGT
ATGCAGAAAATCGGGCAATGGAGCGGCGAGGATGGCTTCCAGGAGAATCG
TCCTGCCCCGGCACACTCCCTGGAGCCGGATATGCGTTCGCTGGTGAACA
AAAGCTTCGTCGTCATCACGGCCATTAGTGAACCCTATGGCATGCTAAAG
GAGACCTCCGAGAAGCTGGAGGGCAACGATCAGTTTGAGGGCTTCGGCAT
CGAACTAATTGACGAGCTGTCCAAGAAGCTGGGATTCTCCTACACATGGC
GCCTCCAGGAGGACAACAAGTATGGTGGAATCGATCCCAAAACAGGCGAA
TGGAATGGCATGTTGCGTGAGATAATTGACAGTCGCGCTGACATGGGCAT
TACGGATCTGACCATGACATCGGAACGAGAGAGCGGAGTCGACTTCACCA
TACCCTTTATGAGTCTGGGAATCGGCATCCTCTTTCGCAAACCGATGAAG
GAGCCACCGAAGCTGTTCTCCTTCATGTCCCCGTTTTCAGGAGAGGTTTG
GCTCTGGCTGGGTCTGGCCTACATGGGCGTATCCATCAGCATGTTCGTGC
TGGGAAGGCTATCTCCGGCGGAGTGGGACAATCCGTATCCCTGCATTGAG
GAGCCAACGGAATTGGAGAATCAGTTTAGTTTCGCCAACTGTCTATGGTT
CTCCATAGGTGCTCTACTTCAGCAAGGATCTGAACTGGCTCCCAAGGCTT
ACTCCACTCGGGCCGTGGCCGCTTCCTGGTGGTTCTTCACATTGATTTTG
GTCTCCTCTTACACTGCTAATCTGGCGGCTTTCCTCACTGTAGAGTCTTT
GGTAACGCCCATCAATGATGCGGATGACCTATCGAAGAACAAGGGCGGTG
TAAACTACGGGGCCAAAATTGGGGGAGCTACCTTTAACTTCTTTAAGGAA
TCAAACTATCCCACCTACCAGCGGATGTACGAGTTCATGAGGGATAATCC
CCAGTACATGACCAACACCAACCAGGAGGGAGTTGATCGCGTGGAGAACT
CCAACTACGCCTTTCTCATGGAGTCCACCACCATTGAGTATATCACAGAG
CGCCGATGCACGCTCACTCAGGTGGGAGCATTGCTGGACGAGAAGGGATA
CGGGATAGCCATGCGAAAGAACTGGCCGTACAGGGACACGTTGAGCCAGG
CTGTTCTAGAGATGCAGGAGCAGGGTCTGCTGACCAAGATGAAGACCAAG
TGGTGGCAGGAGAAGCGCGGCGGGGGAGCTTGTTCGGTAAGTGATCAGCC
TAATCTCAATCTCTGGCAGCTCGTGCATGTGTGGGTGTGTGCAGGACGCG
GACGAGGACTCTGGCGCCGTGGCCCTGGAGATGCAAGCTTTCTAGACCAT

BO10649.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5621-RA 2469 CG5621-PA 1..2466 17..2482 12330 100 Plus
CG5621-RD 2721 CG5621-PD 1..2371 17..2387 11855 100 Plus
CG5621-RC 2724 CG5621-PC 1..2371 17..2387 11855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5621-RA 3640 CG5621-RA 161..2626 17..2482 12330 100 Plus
CG5621-RD 3008 CG5621-RD 161..2531 17..2387 11855 100 Plus
CG5621-RC 3011 CG5621-RC 161..2531 17..2387 11855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20902687..20903294 289..896 3040 100 Plus
3R 32079331 3R 20906150..20906432 1564..1846 1400 99.6 Plus
3R 32079331 3R 20906746..20906974 2042..2270 1130 99.6 Plus
3R 32079331 3R 20903973..20904195 1054..1276 1115 100 Plus
3R 32079331 3R 20907038..20907249 2271..2482 1060 100 Plus
3R 32079331 3R 20904279..20904485 1277..1483 1035 100 Plus
3R 32079331 3R 20906496..20906698 1846..2048 1015 100 Plus
3R 32079331 3R 20902424..20902588 125..289 825 100 Plus
3R 32079331 3R 20903476..20903634 896..1054 795 100 Plus
3R 32079331 3R 20902116..20902226 17..127 555 100 Plus
3R 32079331 3R 20905928..20906013 1484..1569 430 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:09:59 has no hits.

BO10649.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:10 Download gff for BO10649.complete
Subject Subject Range Query Range Percent Splice Strand
CG5621-RA 1..2469 17..2483 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:30 Download gff for BO10649.complete
Subject Subject Range Query Range Percent Splice Strand
CG5621-RA 115..2588 5..2482 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:44 Download gff for BO10649.complete
Subject Subject Range Query Range Percent Splice Strand
CG5621-RA 161..2626 17..2484 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:10 Download gff for BO10649.complete
Subject Subject Range Query Range Percent Splice Strand
CG5621-RA 115..2588 5..2482 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:34 Download gff for BO10649.complete
Subject Subject Range Query Range Percent Splice Strand
CG5621-RA 161..2626 17..2484 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:34 Download gff for BO10649.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20902116..20902224 17..125 100 -> Plus
3R 20902425..20902588 126..289 100 -> Plus
3R 20904279..20904485 1277..1483 100 -> Plus
3R 20905928..20906012 1484..1568 100 -> Plus
3R 20902688..20903294 290..896 100 -> Plus
3R 20903477..20903634 897..1054 100 -> Plus
3R 20903974..20904195 1055..1276 100 -> Plus
3R 20906155..20906431 1569..1845 100 -> Plus
3R 20906496..20906697 1846..2047 100 -> Plus
3R 20906752..20906974 2048..2270 100 -> Plus
3R 20907038..20907249 2271..2484 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:44 Download gff for BO10649.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16727838..16727946 17..125 100 -> Plus
arm_3R 16728147..16728310 126..289 100 -> Plus
arm_3R 16728410..16729016 290..896 100 -> Plus
arm_3R 16729199..16729356 897..1054 100 -> Plus
arm_3R 16729696..16729917 1055..1276 100 -> Plus
arm_3R 16730001..16730207 1277..1483 100 -> Plus
arm_3R 16731650..16731734 1484..1568 100 -> Plus
arm_3R 16731877..16732153 1569..1845 100 -> Plus
arm_3R 16732218..16732419 1846..2047 100 -> Plus
arm_3R 16732474..16732696 2048..2270 100 -> Plus
arm_3R 16732760..16732971 2271..2484 99   Plus

BO10649.pep Sequence

Translation from 16 to 2500

> BO10649.pep
MWFVKMISTEASFPLGFILTSLLLAFPGCRGERTNVGLVYENTDPDLEKI
FHLAISKANEENEDLQLHGVSVSIEPGNSFETSKKLCKMLRQNLVAVFGP
TSNLAARHAMSICDAKELPFLDTRWDFGAQLPTINLHPHPATLGVALRDM
VVALGWESFTIIYESGEYLPTVRELLQMYGTAGPTVTVRRYELDLNGNYR
NVLRRIRNADDFSFVVVGSMATLPEFFKQAQQVGLVTSDYRYIIGNLDWH
TMDLEPYQHAGTNITGLRLVSPDSEQVQEVAKALYESEEPFQNVSCPLTN
SMALVYDGVQLLAETYKHVNFRPVALSCNDDSAWDKGYTLVNYMKSLTLN
GLTGPIRFDYEGLRTDFKLEVIELAVSGMQKIGQWSGEDGFQENRPAPAH
SLEPDMRSLVNKSFVVITAISEPYGMLKETSEKLEGNDQFEGFGIELIDE
LSKKLGFSYTWRLQEDNKYGGIDPKTGEWNGMLREIIDSRADMGITDLTM
TSERESGVDFTIPFMSLGIGILFRKPMKEPPKLFSFMSPFSGEVWLWLGL
AYMGVSISMFVLGRLSPAEWDNPYPCIEEPTELENQFSFANCLWFSIGAL
LQQGSELAPKAYSTRAVAASWWFFTLILVSSYTANLAAFLTVESLVTPIN
DADDLSKNKGGVNYGAKIGGATFNFFKESNYPTYQRMYEFMRDNPQYMTN
TNQEGVDRVENSNYAFLMESTTIEYITERRCTLTQVGALLDEKGYGIAMR
KNWPYRDTLSQAVLEMQEQGLLTKMKTKWWQEKRGGGACSVSDQPNLNLW
QLVHVWVCAGRGRGLWRRGPGDASFLDH

BO10649.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5621-PA 822 CG5621-PA 1..822 1..822 4348 100 Plus
CG5621-PC 907 CG5621-PC 1..794 1..794 4166 99.6 Plus
CG5621-PD 906 CG5621-PD 1..790 1..790 4160 100 Plus
GluRIIE-PB 897 CG31201-PB 37..805 32..796 1969 50.5 Plus
GluRIID-PA 902 CG18039-PA 25..796 25..790 1942 49.3 Plus