Clone BO10650 Report

Search the DGRC for BO10650

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:106
Well:50
Vector:pDNR-Dual
Associated Gene/Transcriptporin-RA
Protein status:BO10650.pep: validated full length
Sequenced Size:880

Clone Sequence Records

BO10650.3prime Sequence

840 bp (740 high quality bases) assembled on 2006-04-19

> BO10650.3prime
ATGGTCTAGAAAGCTTGCGGCCTCCAGCTCCAGACCCACACCGATCTTGT
GGCCGCCGGCATTGAAGTTCTTGCCATCGACCAGCGTGGACAGGGTCAGG
GTGACTCCGTCGCGCAACTTCTGCTGGTAGCCCAGACCCACCTGGCTGGC
GTTGTTCACCTTAGCGCGCACGCTGGCATCATCATCCAGCTGATACTTGG
CGCCGATGGCGAACTTGGTGTTGCTGGTGCCGCTGGCCCACGACAGCTGT
ACACCCACATCCAGCTTGTCCGAAGTGCGTTGGAAGATCGAGCCGCTGAA
CTCCTGGCCATCGTTGACAGCTGTGTGCAGAACAAAGTCCTTGGTGGTGT
AGCCAAGGGCAAAGTTGTTGGTGGTCAGCTTGGACTGTTGTGTGTCAAAT
GCGGTCTGGTAGCCGGCCAACCATCCCTGGTAGCCAAGCACGGCAGAGGC
ATTGATCAAGGGGCCCTTCAGATCAATGTTCACATCCGAATCGGCCTTGA
CGTTCTCATGGCCGTAGGCAACCTTGAACTTGCCGTTCTTGTTTCCAGAC
TGAGGAGCAAAGTTGCCCTCCAGGGACAGCTTCAGACCCTCGAGGAGCTG
ATCCTGGACAGCAACCTCGGTGAACAGCGTGTTGTCTGTGTTCCACTTCT
CGGTGAGGGTCAGGCCGTAGTCCTTGACCTTGTACTTGGTCTCCAGGGAG
CCGAAGACCTTTCCAGACTCCTGGTTGGAGTGTCCGGCTGTGTTGAACTC
AATGCCCGACGAGGTCTTAGTCTTCAGATCGAGCTTCCACAGGCCAAAGT
TGTAGCCTTTGCTGAAGATGTCGCGAGCCTGTTTGCCCAA

BO10650.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6647-PA 849 porin-RA 25..846 840..19 4110 100 Minus
CG6647-PB 849 porin-RB 25..846 840..19 4110 100 Minus
CG6647-PC 849 porin-RC 25..846 840..19 4110 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
porin-RE 1387 CG6647-RE 120..941 840..19 4110 100 Minus
porin-RD 1525 CG6647-RD 60..881 840..19 4110 100 Minus
porin-RC 2625 CG6647-RC 1358..2179 840..19 4110 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:27:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10847871..10848168 19..316 1490 100 Plus
2L 23513712 2L 10848544..10848839 545..840 1480 100 Plus
2L 23513712 2L 10848241..10848469 317..545 1145 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:27:40 has no hits.

BO10650.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:12 Download gff for BO10650.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6647-PC 27..849 15..838 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:00:47 Download gff for BO10650.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6647-PC 27..849 15..838 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:26:15 Download gff for BO10650.3prime
Subject Subject Range Query Range Percent Splice Strand
porin-RC 1360..2183 14..838 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:32 Download gff for BO10650.3prime
Subject Subject Range Query Range Percent Splice Strand
porin-RC 1360..2183 14..838 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:32 Download gff for BO10650.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10847867..10848168 14..316 99 <- Plus
2L 10848241..10848468 317..544 100 <- Plus
2L 10848544..10848837 545..838 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:26:15 Download gff for BO10650.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10847867..10848168 14..316 99 <- Plus
arm_2L 10848241..10848468 317..544 100 <- Plus
arm_2L 10848544..10848837 545..838 100   Plus

BO10650.5prime Sequence

805 bp (803 high quality bases) assembled on 2006-04-19

> BO10650.5prime
GAAGTTATCAGTCGACATGGCTCCTCCATCATACAGCGATTTGGGCAAAC
AGGCTCGCGACATCTTCAGCAAAGGCTACAACTTTGGCCTGTGGAAGCTC
GATCTGAAGACTAAGACCTCGTCGGGCATTGAGTTCAACACAGCCGGACA
CTCCAACCAGGAGTCTGGAAAGGTCTTCGGCTCCCTGGAGACCAAGTACA
AGGTCAAGGACTACGGCCTGACCCTCACCGAGAAGTGGAACACAGACAAC
ACGCTGTTCACCGAGGTTGCTGTCCAGGATCAGCTCCTCGAGGGTCTGAA
GCTGTCCCTGGAGGGCAACTTTGCTCCTCAGTCTGGAAACAAGAACGGCA
AGTTCAAGGTTGCCTACGGCCATGAGAACGTCAAGGCCGATTCGGATGTG
AACATTGATCTGAAGGGCCCCTTGATCAATGCCTCTGCCGTGCTTGGCTA
CCAGGGATGGTTGGCCGGCTACCAGACCGCATTTGACACACAACAGTCCA
AGCTGACCACCAACAACTTTGCCCTTGGCTACACCACCAAGGACTTTGTT
CTGCACACAGCTGTCAACGATGGCCAGGAGTTCAGCGGCTCGATCTTCCA
ACGCACTTCGGACAAGCTGGATGTGGGTGTACAGCTGTCGTGGGCCAGCG
GCACCAGCAACACCAAGTTCGCCATCGGCGCCAAGTATCAGCTGGATGAT
GATGCCAGCGTGCGCGCTAAGGTGAACAACGCCAGCCAGGTGGGTCTGGG
CTACCAGCAGAAGTTGCGCGACGGAGTCACCCTGACCCTGTCCACGCTGG
TCGAT

BO10650.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6647-PA 849 porin-RA 1..789 17..805 3945 100 Plus
CG6647-PB 849 porin-RB 1..789 17..805 3945 100 Plus
CG6647-PC 849 porin-RC 1..789 17..805 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
porin-RC 2625 CG6647-RC 1332..2122 15..805 3955 100 Plus
porin-RE 1387 CG6647-RE 96..884 17..805 3945 100 Plus
porin-RD 1525 CG6647-RD 36..824 17..805 3945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10848544..10848863 336..17 1600 100 Minus
2L 23513712 2L 10847928..10848168 805..565 1205 100 Minus
2L 23513712 2L 10848241..10848469 564..336 1145 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:47:26 has no hits.

BO10650.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:13 Download gff for BO10650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6647-PC 1..789 17..805 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:00:48 Download gff for BO10650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6647-PC 1..789 17..805 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:27:40 Download gff for BO10650.5prime
Subject Subject Range Query Range Percent Splice Strand
porin-RC 1332..2122 15..805 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:05:39 Download gff for BO10650.5prime
Subject Subject Range Query Range Percent Splice Strand
porin-RC 1332..2122 15..805 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:05:39 Download gff for BO10650.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10847928..10848168 565..805 100 <- Minus
2L 10848241..10848468 337..564 100 <- Minus
2L 10848544..10848871 9..336 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:27:40 Download gff for BO10650.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10847928..10848168 565..805 100 <- Minus
arm_2L 10848241..10848468 337..564 100 <- Minus
arm_2L 10848544..10848871 9..336 99   Minus

BO10650.complete Sequence

880 bp (880 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631826

> BO10650.complete
GAAGTTATCAGTCGACATGGCTCCTCCATCATACAGCGATTTGGGCAAAC
AGGCTCGCGACATCTTCAGCAAAGGCTACAACTTTGGCCTGTGGAAGCTC
GATCTGAAGACTAAGACCTCGTCGGGCATTGAGTTCAACACAGCCGGACA
CTCCAACCAGGAGTCTGGAAAGGTCTTCGGCTCCCTGGAGACCAAGTACA
AGGTCAAGGACTACGGCCTGACCCTCACCGAGAAGTGGAACACAGACAAC
ACGCTGTTCACCGAGGTTGCTGTCCAGGATCAGCTCCTCGAGGGTCTGAA
GCTGTCCCTGGAGGGCAACTTTGCTCCTCAGTCTGGAAACAAGAACGGCA
AGTTCAAGGTTGCCTACGGCCATGAGAACGTCAAGGCCGATTCGGATGTG
AACATTGATCTGAAGGGCCCCTTGATCAATGCCTCTGCCGTGCTTGGCTA
CCAGGGATGGTTGGCCGGCTACCAGACCGCATTTGACACACAACAGTCCA
AGCTGACCACCAACAACTTTGCCCTTGGCTACACCACCAAGGACTTTGTT
CTGCACACAGCTGTCAACGATGGCCAGGAGTTCAGCGGCTCGATCTTCCA
ACGCACTTCGGACAAGCTGGATGTGGGTGTACAGCTGTCGTGGGCCAGCG
GCACCAGCAACACCAAGTTCGCCATCGGCGCCAAGTATCAGCTGGATGAT
GATGCCAGCGTGCGCGCTAAGGTGAACAACGCCAGCCAGGTGGGTCTGGG
CTACCAGCAGAAGTTGCGCGACGGAGTCACCCTGACCCTGTCCACGCTGG
TCGATGGCAAGAACTTCAATGCCGGCGGCCACAAGATCGGTGTGGGTCTG
GAGCTGGAGGCCGCAAGCTTTCTAGACCAT

BO10650.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
porin-RE 849 CG6647-PE 1..846 17..862 4230 100 Plus
porin-RD 849 CG6647-PD 1..846 17..862 4230 100 Plus
porin-RC 849 CG6647-PC 1..846 17..862 4230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
porin-RC 2625 CG6647-RC 1332..2179 15..862 4240 100 Plus
porin-RE 1387 CG6647-RE 96..941 17..862 4230 100 Plus
porin-RD 1525 CG6647-RD 36..881 17..862 4230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10848544..10848863 336..17 1600 100 Minus
2L 23513712 2L 10847871..10848168 862..565 1490 100 Minus
2L 23513712 2L 10848241..10848469 564..336 1145 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:39:23 has no hits.

BO10650.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:02 Download gff for BO10650.complete
Subject Subject Range Query Range Percent Splice Strand
porin-RC 1..849 17..866 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:27 Download gff for BO10650.complete
Subject Subject Range Query Range Percent Splice Strand
porin-RC 1998..2855 9..867 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:24 Download gff for BO10650.complete
Subject Subject Range Query Range Percent Splice Strand
porin-RC 1334..2179 17..864 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:03 Download gff for BO10650.complete
Subject Subject Range Query Range Percent Splice Strand
porin-RC 1998..2855 9..867 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:00 Download gff for BO10650.complete
Subject Subject Range Query Range Percent Splice Strand
porin-RC 1334..2179 17..864 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:00 Download gff for BO10650.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10847869..10848168 565..864 99 <- Minus
2L 10848241..10848468 337..564 100 <- Minus
2L 10848544..10848863 17..336 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:24 Download gff for BO10650.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10847869..10848168 565..864 99 <- Minus
arm_2L 10848241..10848468 337..564 100 <- Minus
arm_2L 10848544..10848863 17..336 100   Minus

BO10650.pep Sequence

Translation from 16 to 880

> BO10650.pep
MAPPSYSDLGKQARDIFSKGYNFGLWKLDLKTKTSSGIEFNTAGHSNQES
GKVFGSLETKYKVKDYGLTLTEKWNTDNTLFTEVAVQDQLLEGLKLSLEG
NFAPQSGNKNGKFKVAYGHENVKADSDVNIDLKGPLINASAVLGYQGWLA
GYQTAFDTQQSKLTTNNFALGYTTKDFVLHTAVNDGQEFSGSIFQRTSDK
LDVGVQLSWASGTSNTKFAIGAKYQLDDDASVRAKVNNASQVGLGYQQKL
RDGVTLTLSTLVDGKNFNAGGHKIGVGLELEAASFLDH

BO10650.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
porin-PE 282 CG6647-PE 1..282 1..282 1459 100 Plus
porin-PD 282 CG6647-PD 1..282 1..282 1459 100 Plus
porin-PC 282 CG6647-PC 1..282 1..282 1459 100 Plus
porin-PB 282 CG6647-PB 1..282 1..282 1459 100 Plus
porin-PA 282 CG6647-PA 1..282 1..282 1459 100 Plus