Clone Sequence Records
BO10650.3prime Sequence
840 bp (740 high quality bases) assembled on 2006-04-19
> BO10650.3prime
ATGGTCTAGAAAGCTTGCGGCCTCCAGCTCCAGACCCACACCGATCTTGT
GGCCGCCGGCATTGAAGTTCTTGCCATCGACCAGCGTGGACAGGGTCAGG
GTGACTCCGTCGCGCAACTTCTGCTGGTAGCCCAGACCCACCTGGCTGGC
GTTGTTCACCTTAGCGCGCACGCTGGCATCATCATCCAGCTGATACTTGG
CGCCGATGGCGAACTTGGTGTTGCTGGTGCCGCTGGCCCACGACAGCTGT
ACACCCACATCCAGCTTGTCCGAAGTGCGTTGGAAGATCGAGCCGCTGAA
CTCCTGGCCATCGTTGACAGCTGTGTGCAGAACAAAGTCCTTGGTGGTGT
AGCCAAGGGCAAAGTTGTTGGTGGTCAGCTTGGACTGTTGTGTGTCAAAT
GCGGTCTGGTAGCCGGCCAACCATCCCTGGTAGCCAAGCACGGCAGAGGC
ATTGATCAAGGGGCCCTTCAGATCAATGTTCACATCCGAATCGGCCTTGA
CGTTCTCATGGCCGTAGGCAACCTTGAACTTGCCGTTCTTGTTTCCAGAC
TGAGGAGCAAAGTTGCCCTCCAGGGACAGCTTCAGACCCTCGAGGAGCTG
ATCCTGGACAGCAACCTCGGTGAACAGCGTGTTGTCTGTGTTCCACTTCT
CGGTGAGGGTCAGGCCGTAGTCCTTGACCTTGTACTTGGTCTCCAGGGAG
CCGAAGACCTTTCCAGACTCCTGGTTGGAGTGTCCGGCTGTGTTGAACTC
AATGCCCGACGAGGTCTTAGTCTTCAGATCGAGCTTCCACAGGCCAAAGT
TGTAGCCTTTGCTGAAGATGTCGCGAGCCTGTTTGCCCAA
BO10650.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6647-PA | 849 | porin-RA | 25..846 | 840..19 | 4110 | 100 | Minus |
CG6647-PB | 849 | porin-RB | 25..846 | 840..19 | 4110 | 100 | Minus |
CG6647-PC | 849 | porin-RC | 25..846 | 840..19 | 4110 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:27:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
porin-RE | 1387 | CG6647-RE | 120..941 | 840..19 | 4110 | 100 | Minus |
porin-RD | 1525 | CG6647-RD | 60..881 | 840..19 | 4110 | 100 | Minus |
porin-RC | 2625 | CG6647-RC | 1358..2179 | 840..19 | 4110 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:27:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10847871..10848168 | 19..316 | 1490 | 100 | Plus |
2L | 23513712 | 2L | 10848544..10848839 | 545..840 | 1480 | 100 | Plus |
2L | 23513712 | 2L | 10848241..10848469 | 317..545 | 1145 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:27:40 has no hits.
BO10650.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:12 Download gff for
BO10650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6647-PC | 27..849 | 15..838 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:00:47 Download gff for
BO10650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6647-PC | 27..849 | 15..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:26:15 Download gff for
BO10650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
porin-RC | 1360..2183 | 14..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:32 Download gff for
BO10650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
porin-RC | 1360..2183 | 14..838 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:32 Download gff for
BO10650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10847867..10848168 | 14..316 | 99 | <- | Plus |
2L | 10848241..10848468 | 317..544 | 100 | <- | Plus |
2L | 10848544..10848837 | 545..838 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:26:15 Download gff for
BO10650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10847867..10848168 | 14..316 | 99 | <- | Plus |
arm_2L | 10848241..10848468 | 317..544 | 100 | <- | Plus |
arm_2L | 10848544..10848837 | 545..838 | 100 | | Plus |
BO10650.5prime Sequence
805 bp (803 high quality bases) assembled on 2006-04-19
> BO10650.5prime
GAAGTTATCAGTCGACATGGCTCCTCCATCATACAGCGATTTGGGCAAAC
AGGCTCGCGACATCTTCAGCAAAGGCTACAACTTTGGCCTGTGGAAGCTC
GATCTGAAGACTAAGACCTCGTCGGGCATTGAGTTCAACACAGCCGGACA
CTCCAACCAGGAGTCTGGAAAGGTCTTCGGCTCCCTGGAGACCAAGTACA
AGGTCAAGGACTACGGCCTGACCCTCACCGAGAAGTGGAACACAGACAAC
ACGCTGTTCACCGAGGTTGCTGTCCAGGATCAGCTCCTCGAGGGTCTGAA
GCTGTCCCTGGAGGGCAACTTTGCTCCTCAGTCTGGAAACAAGAACGGCA
AGTTCAAGGTTGCCTACGGCCATGAGAACGTCAAGGCCGATTCGGATGTG
AACATTGATCTGAAGGGCCCCTTGATCAATGCCTCTGCCGTGCTTGGCTA
CCAGGGATGGTTGGCCGGCTACCAGACCGCATTTGACACACAACAGTCCA
AGCTGACCACCAACAACTTTGCCCTTGGCTACACCACCAAGGACTTTGTT
CTGCACACAGCTGTCAACGATGGCCAGGAGTTCAGCGGCTCGATCTTCCA
ACGCACTTCGGACAAGCTGGATGTGGGTGTACAGCTGTCGTGGGCCAGCG
GCACCAGCAACACCAAGTTCGCCATCGGCGCCAAGTATCAGCTGGATGAT
GATGCCAGCGTGCGCGCTAAGGTGAACAACGCCAGCCAGGTGGGTCTGGG
CTACCAGCAGAAGTTGCGCGACGGAGTCACCCTGACCCTGTCCACGCTGG
TCGAT
BO10650.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6647-PA | 849 | porin-RA | 1..789 | 17..805 | 3945 | 100 | Plus |
CG6647-PB | 849 | porin-RB | 1..789 | 17..805 | 3945 | 100 | Plus |
CG6647-PC | 849 | porin-RC | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
porin-RC | 2625 | CG6647-RC | 1332..2122 | 15..805 | 3955 | 100 | Plus |
porin-RE | 1387 | CG6647-RE | 96..884 | 17..805 | 3945 | 100 | Plus |
porin-RD | 1525 | CG6647-RD | 36..824 | 17..805 | 3945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10848544..10848863 | 336..17 | 1600 | 100 | Minus |
2L | 23513712 | 2L | 10847928..10848168 | 805..565 | 1205 | 100 | Minus |
2L | 23513712 | 2L | 10848241..10848469 | 564..336 | 1145 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:47:26 has no hits.
BO10650.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:13 Download gff for
BO10650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6647-PC | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:00:48 Download gff for
BO10650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6647-PC | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:27:40 Download gff for
BO10650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
porin-RC | 1332..2122 | 15..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:05:39 Download gff for
BO10650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
porin-RC | 1332..2122 | 15..805 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:05:39 Download gff for
BO10650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10847928..10848168 | 565..805 | 100 | <- | Minus |
2L | 10848241..10848468 | 337..564 | 100 | <- | Minus |
2L | 10848544..10848871 | 9..336 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:27:40 Download gff for
BO10650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10847928..10848168 | 565..805 | 100 | <- | Minus |
arm_2L | 10848241..10848468 | 337..564 | 100 | <- | Minus |
arm_2L | 10848544..10848871 | 9..336 | 99 | | Minus |
BO10650.complete Sequence
880 bp (880 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631826
> BO10650.complete
GAAGTTATCAGTCGACATGGCTCCTCCATCATACAGCGATTTGGGCAAAC
AGGCTCGCGACATCTTCAGCAAAGGCTACAACTTTGGCCTGTGGAAGCTC
GATCTGAAGACTAAGACCTCGTCGGGCATTGAGTTCAACACAGCCGGACA
CTCCAACCAGGAGTCTGGAAAGGTCTTCGGCTCCCTGGAGACCAAGTACA
AGGTCAAGGACTACGGCCTGACCCTCACCGAGAAGTGGAACACAGACAAC
ACGCTGTTCACCGAGGTTGCTGTCCAGGATCAGCTCCTCGAGGGTCTGAA
GCTGTCCCTGGAGGGCAACTTTGCTCCTCAGTCTGGAAACAAGAACGGCA
AGTTCAAGGTTGCCTACGGCCATGAGAACGTCAAGGCCGATTCGGATGTG
AACATTGATCTGAAGGGCCCCTTGATCAATGCCTCTGCCGTGCTTGGCTA
CCAGGGATGGTTGGCCGGCTACCAGACCGCATTTGACACACAACAGTCCA
AGCTGACCACCAACAACTTTGCCCTTGGCTACACCACCAAGGACTTTGTT
CTGCACACAGCTGTCAACGATGGCCAGGAGTTCAGCGGCTCGATCTTCCA
ACGCACTTCGGACAAGCTGGATGTGGGTGTACAGCTGTCGTGGGCCAGCG
GCACCAGCAACACCAAGTTCGCCATCGGCGCCAAGTATCAGCTGGATGAT
GATGCCAGCGTGCGCGCTAAGGTGAACAACGCCAGCCAGGTGGGTCTGGG
CTACCAGCAGAAGTTGCGCGACGGAGTCACCCTGACCCTGTCCACGCTGG
TCGATGGCAAGAACTTCAATGCCGGCGGCCACAAGATCGGTGTGGGTCTG
GAGCTGGAGGCCGCAAGCTTTCTAGACCAT
BO10650.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
porin-RE | 849 | CG6647-PE | 1..846 | 17..862 | 4230 | 100 | Plus |
porin-RD | 849 | CG6647-PD | 1..846 | 17..862 | 4230 | 100 | Plus |
porin-RC | 849 | CG6647-PC | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
porin-RC | 2625 | CG6647-RC | 1332..2179 | 15..862 | 4240 | 100 | Plus |
porin-RE | 1387 | CG6647-RE | 96..941 | 17..862 | 4230 | 100 | Plus |
porin-RD | 1525 | CG6647-RD | 36..881 | 17..862 | 4230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10848544..10848863 | 336..17 | 1600 | 100 | Minus |
2L | 23513712 | 2L | 10847871..10848168 | 862..565 | 1490 | 100 | Minus |
2L | 23513712 | 2L | 10848241..10848469 | 564..336 | 1145 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:39:23 has no hits.
BO10650.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:02 Download gff for
BO10650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
porin-RC | 1..849 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:27 Download gff for
BO10650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
porin-RC | 1998..2855 | 9..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:24 Download gff for
BO10650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
porin-RC | 1334..2179 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:03 Download gff for
BO10650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
porin-RC | 1998..2855 | 9..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:00 Download gff for
BO10650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
porin-RC | 1334..2179 | 17..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:00 Download gff for
BO10650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10847869..10848168 | 565..864 | 99 | <- | Minus |
2L | 10848241..10848468 | 337..564 | 100 | <- | Minus |
2L | 10848544..10848863 | 17..336 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:24 Download gff for
BO10650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10847869..10848168 | 565..864 | 99 | <- | Minus |
arm_2L | 10848241..10848468 | 337..564 | 100 | <- | Minus |
arm_2L | 10848544..10848863 | 17..336 | 100 | | Minus |
BO10650.pep Sequence
Translation from 16 to 880
> BO10650.pep
MAPPSYSDLGKQARDIFSKGYNFGLWKLDLKTKTSSGIEFNTAGHSNQES
GKVFGSLETKYKVKDYGLTLTEKWNTDNTLFTEVAVQDQLLEGLKLSLEG
NFAPQSGNKNGKFKVAYGHENVKADSDVNIDLKGPLINASAVLGYQGWLA
GYQTAFDTQQSKLTTNNFALGYTTKDFVLHTAVNDGQEFSGSIFQRTSDK
LDVGVQLSWASGTSNTKFAIGAKYQLDDDASVRAKVNNASQVGLGYQQKL
RDGVTLTLSTLVDGKNFNAGGHKIGVGLELEAASFLDH
BO10650.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
porin-PE | 282 | CG6647-PE | 1..282 | 1..282 | 1459 | 100 | Plus |
porin-PD | 282 | CG6647-PD | 1..282 | 1..282 | 1459 | 100 | Plus |
porin-PC | 282 | CG6647-PC | 1..282 | 1..282 | 1459 | 100 | Plus |
porin-PB | 282 | CG6647-PB | 1..282 | 1..282 | 1459 | 100 | Plus |
porin-PA | 282 | CG6647-PA | 1..282 | 1..282 | 1459 | 100 | Plus |