Clone Sequence Records
BO10655.3prime Sequence
891 bp (799 high quality bases) assembled on 2006-04-19
> BO10655.3prime
ATGGTCTAGAAAGCTTGCGATGTGCGAGTGGGAGCGTGCTATGGACAGGG
AGTATGGACTGAGGTCCTTTTGAATTCGCATCGAATCGTAGATGGGGAAC
TCGCAGCACAGGATGAACTTCAAAGCACTGGGCACCTCCACGTAGACAGC
AGGAGGCACTGGTATCAGTGGCGAGGTGGAGGCTTTGTACTTCCGGTACT
CCAGTTGATCTTTGTACTTCTCATCGGCGCTTCGTTCTCGCAGGGGAATC
CCCGACAGAAAGAGAATGATCATCGTAGTGAAAATGGGCGAGGCAATCGC
CACCCACTCGTGGCCACTGATCACATTGAGGGATATGGCAAAGATGCCCC
ACCAGATGACCACTTCGCCAAAGTAGTTCGGATGCCGCGACACGCTCCAC
AGTCCATCATTGCAGAACTTGCCCTGATTGGCCGGATCCTGGCGGAAGGA
GAACTTCTGCAGATCCGCATAGGTCTCCGCCAGCAGGCCAACGATGAACA
TGCCCGTGCCCGTGGAGTCCAGTGTGGTCATGGTCTTTGGGGCACGCGGC
TGCGAGTGGCGCGGTGAATTAATTATTATTACAGGCAGTGACACAATGTA
CACCCAAACAGCCTGGAAGGTCCAGAAGACCGCATAGCGGATGATGTTGC
GACGGGTATCCTCGAACTGTTTGTCGCGACCCAACTTTACGATTCGATAT
AGTAAATATCCGGACAGCCGAGCGCCCCACAGGCAAACGAAGAGCGTGAC
CATCAGCTGGCGACTATCGTAGGCCTTCGATGGACGATCGATTTGGCCGA
GAAAGAAAGTGAGCANGGAGATGATGATGAAGTTAACGCCGCCGGCAAAG
TCCGTCAGCTTGTCCATTTGGAGCACAGAGTTGATCAGAAA
BO10655.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6282-PA | 951 | CG6282-RA | 76..948 | 891..19 | 4346 | 99.8 | Minus |
CG6282-PB | 951 | CG6282-RB | 76..948 | 891..19 | 4346 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:19:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6282-RD | 3303 | CG6282-RD | 765..1637 | 891..19 | 4354 | 99.9 | Minus |
CG6282-RC | 3499 | CG6282-RC | 961..1833 | 891..19 | 4354 | 99.9 | Minus |
CG6282-RB | 3611 | CG6282-RB | 1073..1945 | 891..19 | 4354 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:19:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8614600..8614810 | 614..404 | 1055 | 100 | Minus |
3L | 28110227 | 3L | 8614867..8615063 | 405..209 | 985 | 100 | Minus |
3L | 28110227 | 3L | 8615219..8615408 | 208..19 | 950 | 100 | Minus |
3L | 28110227 | 3L | 8613656..8613820 | 776..612 | 825 | 100 | Minus |
3L | 28110227 | 3L | 8610240..8610357 | 891..774 | 579 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:19:45 has no hits.
BO10655.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:20 Download gff for
BO10655.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-PA | 79..951 | 18..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:00:58 Download gff for
BO10655.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-PB | 79..951 | 18..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:47:37 Download gff for
BO10655.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-RB | 1076..1949 | 13..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:53 Download gff for
BO10655.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-RB | 1076..1949 | 13..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:53 Download gff for
BO10655.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8610243..8610356 | 775..888 | 99 | -> | Minus |
3L | 8613658..8613819 | 613..774 | 100 | -> | Minus |
3L | 8614602..8614809 | 405..612 | 100 | -> | Minus |
3L | 8614868..8615063 | 209..404 | 100 | -> | Minus |
3L | 8615219..8615412 | 13..208 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:47:37 Download gff for
BO10655.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8603343..8603456 | 775..888 | 99 | -> | Minus |
arm_3L | 8606758..8606919 | 613..774 | 100 | -> | Minus |
arm_3L | 8607702..8607909 | 405..612 | 100 | -> | Minus |
arm_3L | 8607968..8608163 | 209..404 | 100 | -> | Minus |
arm_3L | 8608319..8608512 | 13..208 | 98 | | Minus |
BO10655.5prime Sequence
947 bp (862 high quality bases) assembled on 2006-04-19
> BO10655.5prime
GAAGTTATCAGTCGACATGGCCGTAAATGTACTGGACTACGATCACTTCG
CCATTAGCGCCATCGTGGTGGGGAGCCTGCAGTTGGTCTTCTTTCTGATC
AACTCTGTGCTCCAAATGGACAAGCTGACGGACTTTGCCGGCGGCGTTAA
CTTCATCATCATCTCCCTGCTCACTTTCTTTCTCGGCCAAATCGATCGTC
CATCGAAGGCCTACGATAGTCGCCAGCTGATGGTCACGCTCTTCGTTTGC
CTGTGGGGCGCTCGGCTGTCCGGATATTTACTATATCGAATCGTAAAGTT
GGGTCGCGACAAACAGTTCGAGGATACCCGTCGCAACATCATCCGCTATG
CGGTCTTCTGGACCTTCCAGGCTGTTTGGGTGTACATTGTGTCACTGCCT
GTAATAATAATTAATTCACCGCGCCACTCGCAGCCGCGTGCCCCAAAGAC
CATGACCACACTGGACTCCACGGGCACGGGCATGTTCATCGTTGGCCTGC
TGGCGGAGACCTATGCGGATCTGCAGAAGTTCTCCTTCCGCCAGGATCCG
GCCAATCAGGGCAAGTTCTGCAATGATGGACTGTGGAGCGTGTCGCGGCA
TCCGAACTACTTTGGCGAAGTGGTCATCTGGTGGGGCATCTTTGCCATAT
CCCTCAATGTGATCAGTGGCCACGAGTGGGTGGCGATTGCCTCGCCCATT
TTCACTACGATGATCATTCTCTTTCTGTCGGGGATTCCCCTGCGAGAACG
AAGCGCCGATGAGAAGTACAAAGATCAACTGGAGTACCGGAAGTACAAAG
CCTCCACCTCGCCACTGATACCAGTGCCTCCTGCTGTCTACGTGGAGGTG
CCCAGTGCTTTGAAAGTCATCCTGTGCTGCGAGTTCCCCATCTACGATTC
GATGCGAAATCAAAAGGACTCAAGTCATACTCCCTGTCCATAGCACG
BO10655.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6282-PA | 951 | CG6282-RA | 1..903 | 17..919 | 4440 | 99.6 | Plus |
CG6282-PB | 951 | CG6282-RB | 1..903 | 17..919 | 4440 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:42:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6282-RD | 3303 | CG6282-RD | 690..1621 | 17..947 | 4545 | 99.4 | Plus |
CG6282-RC | 3499 | CG6282-RC | 886..1817 | 17..947 | 4545 | 99.4 | Plus |
CG6282-RB | 3611 | CG6282-RB | 998..1929 | 17..947 | 4545 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:42:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8614600..8614810 | 369..579 | 1055 | 100 | Plus |
3L | 28110227 | 3L | 8614867..8615063 | 578..774 | 985 | 100 | Plus |
3L | 28110227 | 3L | 8610165..8610357 | 17..209 | 965 | 100 | Plus |
3L | 28110227 | 3L | 8613656..8613820 | 207..371 | 825 | 100 | Plus |
3L | 28110227 | 3L | 8615219..8615392 | 775..947 | 730 | 96 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:42:38 has no hits.
BO10655.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:21 Download gff for
BO10655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-PA | 1..932 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:00 Download gff for
BO10655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-PB | 1..932 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:53:42 Download gff for
BO10655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-RB | 991..1929 | 9..947 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:54:51 Download gff for
BO10655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-RB | 991..1929 | 9..947 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:54:51 Download gff for
BO10655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8610158..8610356 | 9..208 | 98 | -> | Plus |
3L | 8613658..8613819 | 209..370 | 100 | -> | Plus |
3L | 8614602..8614809 | 371..578 | 100 | -> | Plus |
3L | 8614868..8615063 | 579..774 | 100 | -> | Plus |
3L | 8615219..8615392 | 775..947 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:53:42 Download gff for
BO10655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8603258..8603456 | 9..208 | 98 | -> | Plus |
arm_3L | 8606758..8606919 | 209..370 | 100 | -> | Plus |
arm_3L | 8607702..8607909 | 371..578 | 100 | -> | Plus |
arm_3L | 8607968..8608163 | 579..774 | 100 | -> | Plus |
arm_3L | 8608319..8608492 | 775..947 | 96 | | Plus |
BO10655.complete Sequence
982 bp (982 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631827
> BO10655.complete
GAAGTTATCAGTCGACATGGCCGTAAATGTACTGGACTACGATCACTTCG
CCATTAGCGCCATCGTGGTGGGGAGCCTGCAGTTGGTCTTCTTTCTGATC
AACTCTGTGCTCCAAATGGACAAGCTGACGGACTTTGCCGGCGGCGTTAA
CTTCATCATCATCTCCCTGCTCACTTTCTTTCTCGGCCAAATCGATCGTC
CATCGAAGGCCTACGATAGTCGCCAGCTGATGGTCACGCTCTTCGTTTGC
CTGTGGGGCGCTCGGCTGTCCGGATATTTACTATATCGAATCGTAAAGTT
GGGTCGCGACAAACAGTTCGAGGATACCCGTCGCAACATCATCCGCTATG
CGGTCTTCTGGACCTTCCAGGCTGTTTGGGTGTACATTGTGTCACTGCCT
GTAATAATAATTAATTCACCGCGCCACTCGCAGCCGCGTGCCCCAAAGAC
CATGACCACACTGGACTCCACGGGCACGGGCATGTTCATCGTTGGCCTGC
TGGCGGAGACCTATGCGGATCTGCAGAAGTTCTCCTTCCGCCAGGATCCG
GCCAATCAGGGCAAGTTCTGCAATGATGGACTGTGGAGCGTGTCGCGGCA
TCCGAACTACTTTGGCGAAGTGGTCATCTGGTGGGGCATCTTTGCCATAT
CCCTCAATGTGATCAGTGGCCACGAGTGGGTGGCGATTGCCTCGCCCATT
TTCACTACGATGATCATTCTCTTTCTGTCGGGGATTCCCCTGCGAGAACG
AAGCGCCGATGAGAAGTACAAAGATCAACTGGAGTACCGGAAGTACAAAG
CCTCCACCTCGCCACTGATACCAGTGCCTCCTGCTGTCTACGTGGAGGTG
CCCAGTGCTTTGAAGTTCATCCTGTGCTGCGAGTTCCCCATCTACGATTC
GATGCGAATTCAAAAGGACCTCAGTCCATACTCCCTGTCCATAGCACGCT
CCCACTCGCACATCGCAAGCTTTCTAGACCAT
BO10655.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:21:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6282-RD | 1440 | CG6282-PD | 1..948 | 17..964 | 4740 | 100 | Plus |
CG6282-RC | 951 | CG6282-PC | 1..948 | 17..964 | 4740 | 100 | Plus |
CG6282-RB | 951 | CG6282-PB | 1..948 | 17..964 | 4740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6282-RD | 3303 | CG6282-RD | 690..1637 | 17..964 | 4740 | 100 | Plus |
CG6282-RC | 3499 | CG6282-RC | 886..1833 | 17..964 | 4740 | 100 | Plus |
CG6282-RB | 3611 | CG6282-RB | 998..1945 | 17..964 | 4740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8614600..8614810 | 369..579 | 1055 | 100 | Plus |
3L | 28110227 | 3L | 8614867..8615063 | 578..774 | 985 | 100 | Plus |
3L | 28110227 | 3L | 8610165..8610357 | 17..209 | 965 | 100 | Plus |
3L | 28110227 | 3L | 8615219..8615408 | 775..964 | 950 | 100 | Plus |
3L | 28110227 | 3L | 8613656..8613820 | 207..371 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:21:33 has no hits.
BO10655.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:03 Download gff for
BO10655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-RB | 1..951 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:29 Download gff for
BO10655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-RC | 879..1837 | 9..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:52 Download gff for
BO10655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-RB | 998..1945 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:04 Download gff for
BO10655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-RB | 991..1949 | 9..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:33 Download gff for
BO10655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6282-RB | 998..1945 | 17..966 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:33 Download gff for
BO10655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8614868..8615063 | 579..774 | 100 | -> | Plus |
3L | 8615219..8615408 | 775..966 | 98 | | Plus |
3L | 8610165..8610356 | 17..208 | 100 | -> | Plus |
3L | 8613658..8613819 | 209..370 | 100 | -> | Plus |
3L | 8614602..8614809 | 371..578 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:52 Download gff for
BO10655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8608319..8608508 | 775..966 | 98 | | Plus |
arm_3L | 8607968..8608163 | 579..774 | 100 | -> | Plus |
arm_3L | 8603265..8603456 | 17..208 | 100 | -> | Plus |
arm_3L | 8606758..8606919 | 209..370 | 100 | -> | Plus |
arm_3L | 8607702..8607909 | 371..578 | 100 | -> | Plus |
BO10655.pep Sequence
Translation from 16 to 982
> BO10655.pep
MAVNVLDYDHFAISAIVVGSLQLVFFLINSVLQMDKLTDFAGGVNFIIIS
LLTFFLGQIDRPSKAYDSRQLMVTLFVCLWGARLSGYLLYRIVKLGRDKQ
FEDTRRNIIRYAVFWTFQAVWVYIVSLPVIIINSPRHSQPRAPKTMTTLD
STGTGMFIVGLLAETYADLQKFSFRQDPANQGKFCNDGLWSVSRHPNYFG
EVVIWWGIFAISLNVISGHEWVAIASPIFTTMIILFLSGIPLRERSADEK
YKDQLEYRKYKASTSPLIPVPPAVYVEVPSALKFILCCEFPIYDSMRIQK
DLSPYSLSIARSHSHIASFLDH
BO10655.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6282-PD | 479 | CG6282-PD | 1..322 | 1..322 | 1647 | 98.4 | Plus |
CG6282-PC | 316 | CG6282-PC | 1..316 | 1..316 | 1643 | 100 | Plus |
CG6282-PB | 316 | CG6282-PB | 1..316 | 1..316 | 1643 | 100 | Plus |
CG6282-PA | 316 | CG6282-PA | 1..316 | 1..316 | 1643 | 100 | Plus |