Clone BO10655 Report

Search the DGRC for BO10655

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:106
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG6282-RA
Protein status:BO10655.pep: validated full length
Sequenced Size:982

Clone Sequence Records

BO10655.3prime Sequence

891 bp (799 high quality bases) assembled on 2006-04-19

> BO10655.3prime
ATGGTCTAGAAAGCTTGCGATGTGCGAGTGGGAGCGTGCTATGGACAGGG
AGTATGGACTGAGGTCCTTTTGAATTCGCATCGAATCGTAGATGGGGAAC
TCGCAGCACAGGATGAACTTCAAAGCACTGGGCACCTCCACGTAGACAGC
AGGAGGCACTGGTATCAGTGGCGAGGTGGAGGCTTTGTACTTCCGGTACT
CCAGTTGATCTTTGTACTTCTCATCGGCGCTTCGTTCTCGCAGGGGAATC
CCCGACAGAAAGAGAATGATCATCGTAGTGAAAATGGGCGAGGCAATCGC
CACCCACTCGTGGCCACTGATCACATTGAGGGATATGGCAAAGATGCCCC
ACCAGATGACCACTTCGCCAAAGTAGTTCGGATGCCGCGACACGCTCCAC
AGTCCATCATTGCAGAACTTGCCCTGATTGGCCGGATCCTGGCGGAAGGA
GAACTTCTGCAGATCCGCATAGGTCTCCGCCAGCAGGCCAACGATGAACA
TGCCCGTGCCCGTGGAGTCCAGTGTGGTCATGGTCTTTGGGGCACGCGGC
TGCGAGTGGCGCGGTGAATTAATTATTATTACAGGCAGTGACACAATGTA
CACCCAAACAGCCTGGAAGGTCCAGAAGACCGCATAGCGGATGATGTTGC
GACGGGTATCCTCGAACTGTTTGTCGCGACCCAACTTTACGATTCGATAT
AGTAAATATCCGGACAGCCGAGCGCCCCACAGGCAAACGAAGAGCGTGAC
CATCAGCTGGCGACTATCGTAGGCCTTCGATGGACGATCGATTTGGCCGA
GAAAGAAAGTGAGCANGGAGATGATGATGAAGTTAACGCCGCCGGCAAAG
TCCGTCAGCTTGTCCATTTGGAGCACAGAGTTGATCAGAAA

BO10655.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6282-PA 951 CG6282-RA 76..948 891..19 4346 99.8 Minus
CG6282-PB 951 CG6282-RB 76..948 891..19 4346 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6282-RD 3303 CG6282-RD 765..1637 891..19 4354 99.9 Minus
CG6282-RC 3499 CG6282-RC 961..1833 891..19 4354 99.9 Minus
CG6282-RB 3611 CG6282-RB 1073..1945 891..19 4354 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8614600..8614810 614..404 1055 100 Minus
3L 28110227 3L 8614867..8615063 405..209 985 100 Minus
3L 28110227 3L 8615219..8615408 208..19 950 100 Minus
3L 28110227 3L 8613656..8613820 776..612 825 100 Minus
3L 28110227 3L 8610240..8610357 891..774 579 99.2 Minus
Blast to na_te.dros performed on 2015-02-10 22:19:45 has no hits.

BO10655.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:20 Download gff for BO10655.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6282-PA 79..951 18..888 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:00:58 Download gff for BO10655.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6282-PB 79..951 18..888 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:47:37 Download gff for BO10655.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6282-RB 1076..1949 13..888 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:53 Download gff for BO10655.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6282-RB 1076..1949 13..888 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:53 Download gff for BO10655.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8610243..8610356 775..888 99 -> Minus
3L 8613658..8613819 613..774 100 -> Minus
3L 8614602..8614809 405..612 100 -> Minus
3L 8614868..8615063 209..404 100 -> Minus
3L 8615219..8615412 13..208 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:47:37 Download gff for BO10655.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8603343..8603456 775..888 99 -> Minus
arm_3L 8606758..8606919 613..774 100 -> Minus
arm_3L 8607702..8607909 405..612 100 -> Minus
arm_3L 8607968..8608163 209..404 100 -> Minus
arm_3L 8608319..8608512 13..208 98   Minus

BO10655.5prime Sequence

947 bp (862 high quality bases) assembled on 2006-04-19

> BO10655.5prime
GAAGTTATCAGTCGACATGGCCGTAAATGTACTGGACTACGATCACTTCG
CCATTAGCGCCATCGTGGTGGGGAGCCTGCAGTTGGTCTTCTTTCTGATC
AACTCTGTGCTCCAAATGGACAAGCTGACGGACTTTGCCGGCGGCGTTAA
CTTCATCATCATCTCCCTGCTCACTTTCTTTCTCGGCCAAATCGATCGTC
CATCGAAGGCCTACGATAGTCGCCAGCTGATGGTCACGCTCTTCGTTTGC
CTGTGGGGCGCTCGGCTGTCCGGATATTTACTATATCGAATCGTAAAGTT
GGGTCGCGACAAACAGTTCGAGGATACCCGTCGCAACATCATCCGCTATG
CGGTCTTCTGGACCTTCCAGGCTGTTTGGGTGTACATTGTGTCACTGCCT
GTAATAATAATTAATTCACCGCGCCACTCGCAGCCGCGTGCCCCAAAGAC
CATGACCACACTGGACTCCACGGGCACGGGCATGTTCATCGTTGGCCTGC
TGGCGGAGACCTATGCGGATCTGCAGAAGTTCTCCTTCCGCCAGGATCCG
GCCAATCAGGGCAAGTTCTGCAATGATGGACTGTGGAGCGTGTCGCGGCA
TCCGAACTACTTTGGCGAAGTGGTCATCTGGTGGGGCATCTTTGCCATAT
CCCTCAATGTGATCAGTGGCCACGAGTGGGTGGCGATTGCCTCGCCCATT
TTCACTACGATGATCATTCTCTTTCTGTCGGGGATTCCCCTGCGAGAACG
AAGCGCCGATGAGAAGTACAAAGATCAACTGGAGTACCGGAAGTACAAAG
CCTCCACCTCGCCACTGATACCAGTGCCTCCTGCTGTCTACGTGGAGGTG
CCCAGTGCTTTGAAAGTCATCCTGTGCTGCGAGTTCCCCATCTACGATTC
GATGCGAAATCAAAAGGACTCAAGTCATACTCCCTGTCCATAGCACG

BO10655.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6282-PA 951 CG6282-RA 1..903 17..919 4440 99.6 Plus
CG6282-PB 951 CG6282-RB 1..903 17..919 4440 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6282-RD 3303 CG6282-RD 690..1621 17..947 4545 99.4 Plus
CG6282-RC 3499 CG6282-RC 886..1817 17..947 4545 99.4 Plus
CG6282-RB 3611 CG6282-RB 998..1929 17..947 4545 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8614600..8614810 369..579 1055 100 Plus
3L 28110227 3L 8614867..8615063 578..774 985 100 Plus
3L 28110227 3L 8610165..8610357 17..209 965 100 Plus
3L 28110227 3L 8613656..8613820 207..371 825 100 Plus
3L 28110227 3L 8615219..8615392 775..947 730 96 Plus
Blast to na_te.dros performed on 2015-02-11 09:42:38 has no hits.

BO10655.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:21 Download gff for BO10655.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6282-PA 1..932 17..947 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:00 Download gff for BO10655.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6282-PB 1..932 17..947 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:53:42 Download gff for BO10655.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6282-RB 991..1929 9..947 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:54:51 Download gff for BO10655.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6282-RB 991..1929 9..947 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:54:51 Download gff for BO10655.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8610158..8610356 9..208 98 -> Plus
3L 8613658..8613819 209..370 100 -> Plus
3L 8614602..8614809 371..578 100 -> Plus
3L 8614868..8615063 579..774 100 -> Plus
3L 8615219..8615392 775..947 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:53:42 Download gff for BO10655.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8603258..8603456 9..208 98 -> Plus
arm_3L 8606758..8606919 209..370 100 -> Plus
arm_3L 8607702..8607909 371..578 100 -> Plus
arm_3L 8607968..8608163 579..774 100 -> Plus
arm_3L 8608319..8608492 775..947 96   Plus

BO10655.complete Sequence

982 bp (982 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631827

> BO10655.complete
GAAGTTATCAGTCGACATGGCCGTAAATGTACTGGACTACGATCACTTCG
CCATTAGCGCCATCGTGGTGGGGAGCCTGCAGTTGGTCTTCTTTCTGATC
AACTCTGTGCTCCAAATGGACAAGCTGACGGACTTTGCCGGCGGCGTTAA
CTTCATCATCATCTCCCTGCTCACTTTCTTTCTCGGCCAAATCGATCGTC
CATCGAAGGCCTACGATAGTCGCCAGCTGATGGTCACGCTCTTCGTTTGC
CTGTGGGGCGCTCGGCTGTCCGGATATTTACTATATCGAATCGTAAAGTT
GGGTCGCGACAAACAGTTCGAGGATACCCGTCGCAACATCATCCGCTATG
CGGTCTTCTGGACCTTCCAGGCTGTTTGGGTGTACATTGTGTCACTGCCT
GTAATAATAATTAATTCACCGCGCCACTCGCAGCCGCGTGCCCCAAAGAC
CATGACCACACTGGACTCCACGGGCACGGGCATGTTCATCGTTGGCCTGC
TGGCGGAGACCTATGCGGATCTGCAGAAGTTCTCCTTCCGCCAGGATCCG
GCCAATCAGGGCAAGTTCTGCAATGATGGACTGTGGAGCGTGTCGCGGCA
TCCGAACTACTTTGGCGAAGTGGTCATCTGGTGGGGCATCTTTGCCATAT
CCCTCAATGTGATCAGTGGCCACGAGTGGGTGGCGATTGCCTCGCCCATT
TTCACTACGATGATCATTCTCTTTCTGTCGGGGATTCCCCTGCGAGAACG
AAGCGCCGATGAGAAGTACAAAGATCAACTGGAGTACCGGAAGTACAAAG
CCTCCACCTCGCCACTGATACCAGTGCCTCCTGCTGTCTACGTGGAGGTG
CCCAGTGCTTTGAAGTTCATCCTGTGCTGCGAGTTCCCCATCTACGATTC
GATGCGAATTCAAAAGGACCTCAGTCCATACTCCCTGTCCATAGCACGCT
CCCACTCGCACATCGCAAGCTTTCTAGACCAT

BO10655.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6282-RD 1440 CG6282-PD 1..948 17..964 4740 100 Plus
CG6282-RC 951 CG6282-PC 1..948 17..964 4740 100 Plus
CG6282-RB 951 CG6282-PB 1..948 17..964 4740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6282-RD 3303 CG6282-RD 690..1637 17..964 4740 100 Plus
CG6282-RC 3499 CG6282-RC 886..1833 17..964 4740 100 Plus
CG6282-RB 3611 CG6282-RB 998..1945 17..964 4740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8614600..8614810 369..579 1055 100 Plus
3L 28110227 3L 8614867..8615063 578..774 985 100 Plus
3L 28110227 3L 8610165..8610357 17..209 965 100 Plus
3L 28110227 3L 8615219..8615408 775..964 950 100 Plus
3L 28110227 3L 8613656..8613820 207..371 825 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:21:33 has no hits.

BO10655.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:03 Download gff for BO10655.complete
Subject Subject Range Query Range Percent Splice Strand
CG6282-RB 1..951 17..965 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:29 Download gff for BO10655.complete
Subject Subject Range Query Range Percent Splice Strand
CG6282-RC 879..1837 9..970 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:52 Download gff for BO10655.complete
Subject Subject Range Query Range Percent Splice Strand
CG6282-RB 998..1945 17..966 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:04 Download gff for BO10655.complete
Subject Subject Range Query Range Percent Splice Strand
CG6282-RB 991..1949 9..970 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:33 Download gff for BO10655.complete
Subject Subject Range Query Range Percent Splice Strand
CG6282-RB 998..1945 17..966 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:33 Download gff for BO10655.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8614868..8615063 579..774 100 -> Plus
3L 8615219..8615408 775..966 98   Plus
3L 8610165..8610356 17..208 100 -> Plus
3L 8613658..8613819 209..370 100 -> Plus
3L 8614602..8614809 371..578 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:52 Download gff for BO10655.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8608319..8608508 775..966 98   Plus
arm_3L 8607968..8608163 579..774 100 -> Plus
arm_3L 8603265..8603456 17..208 100 -> Plus
arm_3L 8606758..8606919 209..370 100 -> Plus
arm_3L 8607702..8607909 371..578 100 -> Plus

BO10655.pep Sequence

Translation from 16 to 982

> BO10655.pep
MAVNVLDYDHFAISAIVVGSLQLVFFLINSVLQMDKLTDFAGGVNFIIIS
LLTFFLGQIDRPSKAYDSRQLMVTLFVCLWGARLSGYLLYRIVKLGRDKQ
FEDTRRNIIRYAVFWTFQAVWVYIVSLPVIIINSPRHSQPRAPKTMTTLD
STGTGMFIVGLLAETYADLQKFSFRQDPANQGKFCNDGLWSVSRHPNYFG
EVVIWWGIFAISLNVISGHEWVAIASPIFTTMIILFLSGIPLRERSADEK
YKDQLEYRKYKASTSPLIPVPPAVYVEVPSALKFILCCEFPIYDSMRIQK
DLSPYSLSIARSHSHIASFLDH

BO10655.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG6282-PD 479 CG6282-PD 1..322 1..322 1647 98.4 Plus
CG6282-PC 316 CG6282-PC 1..316 1..316 1643 100 Plus
CG6282-PB 316 CG6282-PB 1..316 1..316 1643 100 Plus
CG6282-PA 316 CG6282-PA 1..316 1..316 1643 100 Plus