Clone BO10656 Report

Search the DGRC for BO10656

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:106
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG31025-RA
Protein status:BO10656.pep: validated full length
Sequenced Size:3028

Clone Sequence Records

BO10656.3prime Sequence

935 bp (780 high quality bases) assembled on 2006-04-19

> BO10656.3prime
ATGGTCTAGAAAGCTTGCGTTGATGGAAATGTCGGAGGAGTGGGGTCCGA
GGGTGGGGTCGAACCGGACCATCTTCTTCGTTCTCCGCTTAACCCTTAAC
CGCTTCCGCTCATTGGCCATTTCCCGGGACCAGGGCTGCTGGCGCTGTGG
AGCTGTGGGTGGATAGGCGGCTTGATCCAGGAGGCGCATGTGGTCGCCAG
TCAGTGGAAGTTCCGAGTCGGTACTATAGCTGGGAGGATTACAAATCGGC
CTTATCTCCCGGTCCTTAGTTTGGATGGTGGTATTATTGACTCGGCTGTA
GACACAGGAATCCTGATGATCCTGTCCCGAGAAACCACCAGCAACGCGAC
CGGGGACCGGCTTCTTCTTCTTGGGCTTCTTTGGAATGTTCCTCATCTTG
GGCGGCTTGGGCTCCTCCTGGATTACGCCCTTTCCATAGATCCAATTGAA
TGGCTTCTCTCGCTCACCCATCACACAGCTCTCGTACTGGACTGTGGCGT
CGGGCATATGGGGATATAGGCTCGGATTGACCCAGTCACTCTCGTTGTAC
TGCGTCTCGGTGTGCTTCACATGGGAGCTCTTCAGTCGCTCTGGACGCAT
TAAGCCCGCCGGCGGAGTGACCCCGAAGTCGAACTCATCCTCGCTGTCGG
AGGTGTCCGTTAGAACGAGCTCATCCTCGCAGGAATCTATCTTCCGGCGC
TCGCACTCCCTCCGCACATGGTACAGCAGCCGCTTTTTGTCCACGAAACT
GCGGCAGTAGCAGTTCATCAGCGGTTTGTGGCAAGAGCACTTGCTGAATC
CCATTCCCTTGAGGCAGCGCTTTCAATCGCNGATTTCCTTCAGCAGCGGA
TTCTTGACGATCCGAAACTGAACGGGCTTCATTCTCACGTAGGGATTGGC
GGAGCGAGCGAGCGTCTTGGCATCCTTGAGAGGAC

BO10656.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG31025-PB 2229 CG31025-RB 1310..2226 935..19 4491 99.5 Minus
CG31025-PA 2997 CG31025-RA 2078..2994 935..19 4491 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
Ppi1-RA 3310 CG31025-RA 2259..3175 935..19 4529 99.6 Minus
Ppi1-RB 3376 CG31025-RB 2325..3241 935..19 4529 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30125768..30126684 19..935 4529 99.6 Plus
Blast to na_te.dros performed on 2015-02-06 17:18:44 has no hits.

BO10656.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:22 Download gff for BO10656.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31025-PB 1310..2229 16..935 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:01 Download gff for BO10656.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31025-PA 2078..2997 16..935 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:31:15 Download gff for BO10656.3prime
Subject Subject Range Query Range Percent Splice Strand
Ppi1-RB 2325..3241 19..935 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:28:33 Download gff for BO10656.3prime
Subject Subject Range Query Range Percent Splice Strand
Ppi1-RB 2325..3241 19..935 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:28:33 Download gff for BO10656.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30125768..30126684 19..935 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:31:15 Download gff for BO10656.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25951490..25952406 19..935 99   Plus

BO10656.5prime Sequence

935 bp (826 high quality bases) assembled on 2006-04-19

> BO10656.5prime
GAAGTTATCAGTCGACATGGAGAAGTACGAGTGCAAGCCAGAGCCGGTGG
AGAAGAAGGAGAAGCCGGTGGAAGAGCTAATGAACTGGGATGCCTACTAC
AAGAACCGCGGATTGGTCAGCACCCGATTGGGCAGCTGCAAAGCGGACTA
CATGCACTGCTCCACGTACCAGGAGAAGGGTAATGCCCAGGAGAAGGACA
AGAAGGGTAAGGGCGCGTGCTGTTGCTCCTCCTGTCCGGTTCGAAACCGG
GAAGAGGTATACCAGCCCAGGTGCCCGGCTCCCGGCCAGAAGGGCAAGCC
CAACAGGGACTACATGCGCTGCTTTGCCGCCAAACTGATCGTTCAGAAGC
TCAACATGCCCGGTAGGGACTTCGAATGCCAGGATAAGCTGCAGATTAAG
GCAAACGTGTGCCGCGGGTGCAAGATCTGCCTTGGTTCCAGCAGCATCAA
TGTCAACTGTCTTCCACTGAATCCGGACAAGACATTCCAGATGGAAGCCG
AGTGCCTGCAGAGGCAGCTGGCCGAAGGCATAAACATATCCGTGGTCTAT
CTGCGCAAGGAGATCGCACGAGGCTGCTATTTTCCACCCGCGGCGGTGGT
CAGTCGCATGATCAACGATTTTGACGAGATTGTGCACGATGCGAATGTGG
AGCTAACCTGCAAGGGATGCACCGTCGGCATTATGAACATCCGCTTCGCC
ATGCAGATGCGCTGCCAGACCCTCAAAGAAGATGCGGTCGATGGACGATT
GGCGGGCGGCCAGGAGCGGGGGGTGTTTTCCGAACATGAATGTGGATCTC
CAGGACCTCTCCTTCATGTCCACCTCTTCCATTGATCCGTGTGTGGGTTT
CATGCCCAGTGATACGGAGGTAGCGCAGGATTCCCCTCCTTGCAGTGAGG
ATAGGGGGCAGGATTCTTTTCATGTCAAGATTCCC

BO10656.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG31025-PA 2997 CG31025-RA 1..756 17..772 3780 100 Plus
CG31025-PA 2997 CG31025-RA 752..905 769..922 745 99.3 Plus
CG31025-PB 2229 CG31025-RB 1..137 786..922 660 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
Ppi1-RA 3310 CG31025-RA 182..1100 17..935 4520 99.6 Plus
Ppi1-RB 3376 CG31025-RB 182..894 17..729 3565 100 Plus
Ppi1-RB 3376 CG31025-RB 961..1166 730..935 955 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30128389..30128938 566..17 2750 100 Minus
3R 32079331 3R 30127908..30128099 922..730 900 99 Minus
3R 32079331 3R 30128166..30128329 729..566 820 100 Minus
Blast to na_te.dros performed on 2015-02-11 12:17:30 has no hits.

BO10656.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:23 Download gff for BO10656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31025-PA 1..919 17..935 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:02 Download gff for BO10656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31025-PA 1..919 17..935 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:28:42 Download gff for BO10656.5prime
Subject Subject Range Query Range Percent Splice Strand
Ppi1-RA 178..1100 9..935 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:47:33 Download gff for BO10656.5prime
Subject Subject Range Query Range Percent Splice Strand
Ppi1-RA 178..1100 9..935 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:47:33 Download gff for BO10656.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30127902..30128099 730..927 98 <- Minus
3R 30128166..30128328 567..729 100 <- Minus
3R 30128389..30128942 9..566 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:28:42 Download gff for BO10656.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25953624..25953821 730..927 98 <- Minus
arm_3R 25953888..25954050 567..729 100 <- Minus
arm_3R 25954111..25954664 9..566 99   Minus

BO10656.complete Sequence

3028 bp (3028 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631828

> BO10656.complete
GAAGTTATCAGTCGACATGGAGAAGTACGAGTGCAAGCCAGAGCCGGTGG
AGAAGAAGGAGAAGCCGGTGGAAGAGCTAATGAACTGGGATGCCTACTAC
AAGAACCGCGGATTGGTCAGCACCCGATTGGGCAGCTGCAAAGCGGACTA
CATGCACTGCTCCACGTACCAGGAGAAGGGTAATGCCCAGGAGAAGGACA
AGAAGGGTAAGGGCGCGTGCTGTTGCTCCTCCTGTCCGGTTCGAAACCGG
GAAGAGGTATACCAGCCCAGGTGCCCGGCTCCCGGCCAGAAGGGCAAGCC
CAACAGGGACTACATGCGCTGCTTTGCCGCCAAACTGATCGTTCAGAAGC
TCAACATGCCCGGTAGGGACTTCGAATGCCAGGATAAGCTGCAGATTAAG
GCAAACGTGTGCCGCGGGTGCAAGATCTGCCTTGGTTCCAGCAGCATCAA
TGTCAACTGTCTTCCACTGAATCCGGACAAGACATTCCAGATGGAAGCCG
AGTGCCTGCAGAGGCAGCTGGCCGAAGGCATAAACATATCCGTGGTCTAT
CTGCGCAAGGAGATCGCACGAGGCTGCTATTTTCCACCCGCGGCGGTGGT
CAGTCGCATGATCAACGATTTTGACGAGATTGTGCACGATGCGAATGTGG
AGCTAACCTGCAAGGGATGCACCGTCGGCATTATGAACATCCGCTTCGCC
ATGCAGATGCGCTGCCAGACCCTCAAAGAAGATGCGGTCGATGGACGATT
GGCGGGCGGCCAGGAGCGGGGGTGTTTTCCGAACATGAATGTGGATCTCC
AGGACCTCTCCTTCATGTCCACCTCTTCCATTGATCCGTGTGTGGGTTTC
ATGCCCAGTGATACGGAGGTAGCGCAGGATTCCCCTCCTTGCAGTGAGGA
TAGGGCGCAGGATTCTTTTCAATGTCAGGATTCCCCACCTCGCCTGATCG
ACATGGCGGGTCCCTATCCCGTGTACTCCTGTCCCAACGTGGACGACGAT
TGTGTGACCTTCGAGCCCCCGGCGGGTCCTGCCACTCAGTTCTCCTCCTG
CCAAAAGAACGTTCTAGGTGAGGGAAATGCGAACCGCTTGTGCCAGAAGC
ATTCCTCGCCAAGACTGCGACAGATGCACATCAGCAACACCCGATCCTGC
GTCCTTTGCGGCGAGGATGTCTCCTGGTTACCCAAGGTGGCCGCTTGTCC
TTGCTGTGGCTATAAACCAGTGCCGGAGTTCAAGGAGCGACCCTACGACG
AGCAGGCCACTGCCCAACAGATTCTGCTGGACCATCTGGAAAATCCTGTG
GAGAATCTCAGCTTTGATATGGGATCGGTCGAAGGCTGTTCGGCGAATGA
AGAACATGGTGTTCCAGAACCCACCTCGGAAGCCTTTGAAGCAATTGTGA
AGGACTACCAGCTTCTGAGGCGCAGCATTCGCGAGTCCAACACCAAAGCC
ACCCAGTCGGCCACCAAAAATCCCACTGCTCAAGAAGGTTCAGCTCAGCC
GCAAGACTTGGCCAAGGTGTTTACGGAGCTGAGAGATCTGTTCAATGTTA
AAGCCGCGGATGAGAACCAGAAGATCCAGGACATCTGCGCGGAGGCCTGT
GCCCTTGCTAAGTCGCACAAAAAGAGCAAAAATCGTCCTGCATCGCCGGA
AAGGACAAAGGCTGGCAAGACGGACCCTGTGGAGGATGCCTGCGAAACAC
CGCGGAAGATGAAGAAGCGTCGCCCGAAGGTCAAACGTCCCTATAAGTCG
AGGTACTACTCAATGTATCGCCCCACGGAGAGGCCCAAGGCAAATGTAGC
CATCCCGGATGCAGACAAAAAAGTTCCCAGCCACATGGGTTGGTTGTGGA
CCGCTCATCCACTAGCCAACAAGCCTGGCTGGCGACCCGGAGCCATTCGA
CGTTCCATTCGCGGTCTAATGAGTTACTTCCTTAAGGACTTTCCCGTGGA
TAACGTGCCCGTGTCGAAGTACATGTCATACTACAAGCATAAGATGTCGC
CGATGTCTCCACCGGGTGAGAAGGCGGAGGATTTGGTGCAGGTGCCCACG
CTGCACATTGAAAAGAAGAACGATGTGTACACCATTACCCTGCGTCCTCT
CAAGGATGCCAAGACGCTCGCTCGCTCCGCCAATCCCTACGTGAGAATGA
AGCCCGTTCAGTTTCGGATCGTCAAGAATCCGCTGCTGAAGGAAATTCGC
GATTTGAAGCGCTGCCTCAAGGGAATGGGATTCAGCAAGTGCTCTTGCCA
CAAACCGCTGATGAACTGCTACTGCCGCAGTTTCGTGGACAAAAAGCGGC
TGCTGTACCATGTGCGGAGGGAGTGCGAGCGCCGGAAGATAGATTCCTGC
GAGGATGAGCTCGTTCTAACGGACACCTCCGACAGCGAGGATGAGTTCGA
CTTCGGGGTCACTCCGCCGGCGGGCTTAATGCGTCCAGAGCGACTGAAGA
GCTCCCATGTGAAGCACACCGAGACGCAGTACAACGAGAGTGACTGGGTC
AATCCGAGCCTATATCCCCATATGCCCGACGCCACAGTCCAGTACGAGAG
CTGTGTGATGGGTGAGCGAGAGAAGCCATTCAATTGGATCTATGGAAAGG
GCGTAATCCAGGAGGAGCCCAAGCCGCCCAAGATGAGGAACATTCCAAAG
AAGCCCAAGAAGAAGAAGCCGGTCCCCGGTCGCGTTGCTGGTGGTTTCTC
GGGACAGGATCATCAGGATTCCTGTGTCTACAGCCGAGTCAATAATACCA
CCATCCAAACTAAGGACCGGGAGATAAGGCCGATTTGTAATCCTCCCAGC
TATAGTACCGACTCGGAACTTCCACTGACTGGCGACCACATGCGCCTCCT
GGATCAAGCCGCCTATCCACCCACAGCTCCACAGCGCCAGCAGCCCTGGT
CCCGGGAAATGGCCAATGAGCGGAAGCGGTTAAGGGTTAAGCGGAGAACG
AAGAAGATGGTCCGGTTCGACCCCACCCTCGGACCCCACTCCTCCGACAT
TTCCATCAACGCAAGCTTTCTAGACCAT

BO10656.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
Ppi1-RA 2997 CG31025-PA 1..2994 17..3010 14970 100 Plus
Ppi1-RB 2229 CG31025-PB 1..2226 785..3010 11130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
Ppi1-RA 3310 CG31025-RA 182..3175 17..3010 14970 100 Plus
Ppi1-RB 3376 CG31025-RB 961..3241 730..3010 11405 100 Plus
Ppi1-RB 3376 CG31025-RB 182..894 17..729 3565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30125768..30127851 3010..927 10420 100 Minus
3R 32079331 3R 30128389..30128938 566..17 2750 100 Minus
3R 32079331 3R 30127900..30128099 929..730 1000 100 Minus
3R 32079331 3R 30128166..30128329 729..566 820 100 Minus
Blast to na_te.dros performed on 2014-11-27 12:53:08 has no hits.

BO10656.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:15 Download gff for BO10656.complete
Subject Subject Range Query Range Percent Splice Strand
CG31025-RA 1..2997 17..3013 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:35 Download gff for BO10656.complete
Subject Subject Range Query Range Percent Splice Strand
CG31025-RA 178..3175 9..3010 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:16 Download gff for BO10656.complete
Subject Subject Range Query Range Percent Splice Strand
Ppi1-RA 182..3175 17..3012 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:15 Download gff for BO10656.complete
Subject Subject Range Query Range Percent Splice Strand
CG31025-RA 178..3175 9..3010 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:45 Download gff for BO10656.complete
Subject Subject Range Query Range Percent Splice Strand
Ppi1-RA 182..3175 17..3012 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:45 Download gff for BO10656.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30125765..30127849 929..3012 99 <- Minus
3R 30127901..30128099 730..928 100 <- Minus
3R 30128166..30128328 567..729 100 <- Minus
3R 30128389..30128938 17..566 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:16 Download gff for BO10656.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25951487..25953571 929..3012 99 <- Minus
arm_3R 25953623..25953821 730..928 100 <- Minus
arm_3R 25953888..25954050 567..729 100 <- Minus
arm_3R 25954111..25954660 17..566 100   Minus

BO10656.pep Sequence

Translation from 16 to 3028

> BO10656.pep
MEKYECKPEPVEKKEKPVEELMNWDAYYKNRGLVSTRLGSCKADYMHCST
YQEKGNAQEKDKKGKGACCCSSCPVRNREEVYQPRCPAPGQKGKPNRDYM
RCFAAKLIVQKLNMPGRDFECQDKLQIKANVCRGCKICLGSSSINVNCLP
LNPDKTFQMEAECLQRQLAEGINISVVYLRKEIARGCYFPPAAVVSRMIN
DFDEIVHDANVELTCKGCTVGIMNIRFAMQMRCQTLKEDAVDGRLAGGQE
RGCFPNMNVDLQDLSFMSTSSIDPCVGFMPSDTEVAQDSPPCSEDRAQDS
FQCQDSPPRLIDMAGPYPVYSCPNVDDDCVTFEPPAGPATQFSSCQKNVL
GEGNANRLCQKHSSPRLRQMHISNTRSCVLCGEDVSWLPKVAACPCCGYK
PVPEFKERPYDEQATAQQILLDHLENPVENLSFDMGSVEGCSANEEHGVP
EPTSEAFEAIVKDYQLLRRSIRESNTKATQSATKNPTAQEGSAQPQDLAK
VFTELRDLFNVKAADENQKIQDICAEACALAKSHKKSKNRPASPERTKAG
KTDPVEDACETPRKMKKRRPKVKRPYKSRYYSMYRPTERPKANVAIPDAD
KKVPSHMGWLWTAHPLANKPGWRPGAIRRSIRGLMSYFLKDFPVDNVPVS
KYMSYYKHKMSPMSPPGEKAEDLVQVPTLHIEKKNDVYTITLRPLKDAKT
LARSANPYVRMKPVQFRIVKNPLLKEIRDLKRCLKGMGFSKCSCHKPLMN
CYCRSFVDKKRLLYHVRRECERRKIDSCEDELVLTDTSDSEDEFDFGVTP
PAGLMRPERLKSSHVKHTETQYNESDWVNPSLYPHMPDATVQYESCVMGE
REKPFNWIYGKGVIQEEPKPPKMRNIPKKPKKKKPVPGRVAGGFSGQDHQ
DSCVYSRVNNTTIQTKDREIRPICNPPSYSTDSELPLTGDHMRLLDQAAY
PPTAPQRQQPWSREMANERKRLRVKRRTKKMVRFDPTLGPHSSDISINAS
FLDH

BO10656.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
Ppi1-PA 998 CG31025-PA 1..998 1..998 5409 100 Plus
Ppi1-PB 742 CG31025-PB 1..742 257..998 4008 100 Plus
CG31029-PA 905 CG31029-PA 328..886 365..894 961 38.1 Plus
CG14355-PA 1024 CG14355-PA 16..791 83..851 600 27.6 Plus
CG31533-PA 844 CG31533-PA 320..761 376..851 424 29.9 Plus