Clone BO10657 Report

Search the DGRC for BO10657

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:106
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCG9323-RA
Protein status:BO10657.pep: validated full length
Sequenced Size:2860

Clone Sequence Records

BO10657.3prime Sequence

836 bp (784 high quality bases) assembled on 2006-04-19

> BO10657.3prime
ATGGTCTAGAAAGCTTGCTATGTCATCGATTTCATCGGATGAAATATAGT
CCTCGCCGAGTCTTTCGTCTAGCGAGAGAAGCAATTCGATGGCTTTGATC
AACTGCTTTTCATATCCGTTCTCCTCGATCGGGGCCGGATACAAAGCCTT
TTTGAGCAGCAGTTTCTCCAAATTGCTTCTTAATTGTATGACTACGTCGG
CAGTTTCACGATTGCATTTAAAGTAATATGTCTTGGCCACGCACAGATAT
GGCGTATTTTGGGTCACTCCCGCTTCCACGCCATCTCCGAAAATGATCAG
TGCCATGGGAAAAACCATTGTGGAGTCGAGCAGGAAAAGATCGGTGGACT
TCTGCCGCTGAAAGTAGACAAAGTATGCCGAGTCGAAGCCACTCTCTCCG
CTGTTCACCGAGGAGGGATGAAAGTTAACGCGGCGTCCATCGTCCGTTGC
CATGGTGTGGATAGCGCGTACTCTATTCTTGATCTGCCGTGATTTTCGCA
AGTGAGCCATGTTGGGATAGAGTCCCGCTCCTATAATGGCCCTCAGTAGG
GGAATCTTCTCAGAATTCTTATTGGATGCAGCATCCTTGCAGTTTGACGA
TGCCAGAAATTTGTAGTTGTAGAGCAGCTCACTGAACTGATTCTTCATCC
TCTCCAACTGCTGCAGTGTCATGGAGCTGAGGAAATTCTTATAGCAGAAG
TCTCGTTCCGCGTGCGAATAGCGGCTATCGCGGTACGCAATAATGGTATT
GTGCACCATCAGGTGATCGCTCCGCATATTTCGGGCCATTCTCCGCTTGA
TTTCATCCACTCGGCTCTCTTTACCCAAGGCGAGTA

BO10657.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9323-PA 2829 CG9323-RA 2017..2826 828..19 4050 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9323-RB 3125 CG9323-RB 2211..3029 836..19 4070 99.9 Minus
CG9323-RA 3019 CG9323-RA 2105..2923 836..19 4070 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:00:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20754993..20755266 224..497 1370 100 Plus
2L 23513712 2L 20755488..20755705 611..828 1090 100 Plus
2L 23513712 2L 20754809..20754937 95..223 645 100 Plus
2L 23513712 2L 20755320..20755433 497..610 570 100 Plus
2L 23513712 2L 20754675..20754750 19..94 380 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:00:33 has no hits.

BO10657.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:24 Download gff for BO10657.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9323-PA 2009..2829 15..835 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:04 Download gff for BO10657.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9323-PA 2009..2829 15..835 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:40:13 Download gff for BO10657.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9323-RA 2106..2933 8..835 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:43:29 Download gff for BO10657.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9323-RA 2106..2933 8..835 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:29 Download gff for BO10657.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20754665..20754750 8..94 94 <- Plus
2L 20754809..20754937 95..223 100 <- Plus
2L 20754993..20755265 224..496 100 <- Plus
2L 20755320..20755433 497..610 100 <- Plus
2L 20755488..20755713 611..835 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:40:13 Download gff for BO10657.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20754665..20754750 8..94 94 <- Plus
arm_2L 20754809..20754937 95..223 100 <- Plus
arm_2L 20754993..20755265 224..496 100 <- Plus
arm_2L 20755320..20755433 497..610 100 <- Plus
arm_2L 20755488..20755713 611..835 99   Plus

BO10657.5prime Sequence

912 bp (867 high quality bases) assembled on 2006-04-19

> BO10657.5prime
GAAGTTATCAGTCGACATGCAGCGCGATAGGGACTCATCCGGCTCCAACG
CCCGCAAGGGCAACCGCCCACCGGGTCTCAGGGGCAAGGACATCGGTTTG
TACTATCGCAATCTTGCCCGGCAGCAAAAGAAGGACAGAGGCGAGAATGC
GGAATCAAAGGAGCCGCAAATCCGCTTGGGCTGCAATGTCAGTGCTCCCA
GTGGAGTGCTTGAGCGTGTGAAGGAGTTAATGGAGGACTACAGCCGGGCA
CCGTCCAGACAAAATGTGGATGACAAAAATGTGGATGCCAAATTTCAGCA
ACAGTTTCGCCATCTTTTGAGTGTAAACTTTGAGGAATTCGTTGCGGAGA
CCAAGGAACGGAACGCGGACTTAGACTGGGTAAACCCCAAGCTGGACGAG
AGACTGCAGCTGGAACTGGGGCAACGCCAGTTGGAGGAGAATGCCAAGAA
ACGGCTAGAAGCACGGAAAAAACTGCCCACCATGAAATACGCCGACGATA
TTATCCAGGCTGTGCGGGAAAACCAAGTAATACTCATTGTAGGAAGCACT
GGATGTGGCAAGACCACTCAGGTGCCTCAAATCCTCCTCGACGACGCCAT
TTCCCGCGGATGTGCCTCGTCGTGCCGCATCATTTGCACTCAGCCACGAA
GGATTTCAGCCATCGCCATTGCCGAGTGGGTGAGTTACGAGCGCTGCGAG
AGCCTGGGCAATTCGGTAGGCTACCAGATTCGCCTAGAGAGCAGGAAGGC
CAGGGAGAGAGCCTCCATCACTTACTGCACCACAGGCGTTCTACTGCAGC
AGCTTCAATCGGACCCACTGATGCACAATCTAAGTGTCTTAATCCTGGAT
GAGATCCACGAACGCAGCGTGGAAACAGATCTCCTAATGGGGCTTCTAAA
GGTATCCTGCCC

BO10657.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9323-PA 2829 CG9323-RA 1..887 17..903 4410 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9323-RB 3125 CG9323-RB 204..1100 17..912 4445 99.8 Plus
CG9323-RA 3019 CG9323-RA 98..994 17..912 4445 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20756896..20757782 903..17 4420 99.9 Minus
Blast to na_te.dros performed on 2015-02-13 00:47:44 has no hits.

BO10657.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:25 Download gff for BO10657.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9323-PA 1..897 17..912 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:05 Download gff for BO10657.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9323-PA 1..897 17..912 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:02:43 Download gff for BO10657.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9323-RA 94..994 9..912 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:48:50 Download gff for BO10657.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9323-RA 94..994 9..912 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:48:50 Download gff for BO10657.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20756886..20757786 9..912 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:02:43 Download gff for BO10657.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20756886..20757786 9..912 99   Minus

BO10657.complete Sequence

2860 bp (2860 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631829

> BO10657.complete
GAAGTTATCAGTCGACATGCAGCGCGATAGGGACTCATCCGGCTCCAACG
CCCGCAAGGGCAACCGCCCACCGGGTCTCAGGGGCAAGGACATCGGTTTG
TACTATCGCAATCTTGCCCGGCAGCAAAAGAAGGACAGAGGCGAGAATGC
GGAATCAAAGGAGCCGCAAATCCGCTTGGGCTGCAATGTCAGTGCTCCCA
GTGGAGTGCTTGAGCGTGTGAAGGAGTTAATGGAGGACTACAGCCGGGCA
CCGTCCAGACAAAATGTGGATGACAAAAATGTGGATGCCAAATTTCAGCA
ACAGTTTCGCCATCTTTTGAGTGTAAACTTTGAGGAATTCGTTGCGGAGA
CCAAGGAACGGAACGCGGACTTAGACTGGGTAAACCCCAAGCTGGACGAG
AGACTGCAGCTGGAACTGGGGCAACGCCAGTTGGAGGAGAATGCCAAGAA
ACGGCTAGAAGCACGGAAAAAACTGCCCACCATGAAATACGCCGACGATA
TTATCCAGGCTGTGCGGGAAAACCAAGTAATACTCATTGTAGGAAGCACT
GGATGTGGCAAGACCACTCAGGTGCCTCAAATCCTCCTCGACGACGCCAT
TTCCCGCGGATGTGCCTCGTCGTGCCGCATCATTTGCACTCAGCCACGAA
GGATTTCAGCCATCGCCATTGCCGAGTGGGTGAGTTACGAGCGCTGCGAG
AGCCTGGGCAATTCGGTAGGCTACCAGATTCGCCTAGAGAGCAGGAAGGC
CAGGGAGAGAGCCTCCATCACTTACTGCACCACAGGCGTTCTACTGCAGC
AGCTTCAATCGGACCCACTGATGCACAATCTAAGTGTCTTAATCCTGGAT
GAGATCCACGAACGCAGCGTGGAAACAGATCTCCTAATGGGTCTTCTAAA
GGTTATCCTGCCCCACAGACCCGATCTAAAGGTGATCCTGATGAGTGCAA
CTGTACGGGAGCAGGATTTTTGTGACTACTTTAACAACTGTCCCATGTTC
CGCATCGAGGGCGTGATGTTTCCCGTGAAGATGCTCTACTTGGAGGATGT
TCTGTCCAAGACGAACTACGAGTTCCAAAAGTTCCGCGATCGTCGTCCCA
AGCGGGATCCGCCTGAGCGCAGGATGAAGCACGAGGCTATGATAGAACCG
TATCTGCGACGCATCAGGAACTCGTACGATAGTCGTGTGCTCGACAAGCT
GCGTTTGCCGGAGTCGGAGGGCTGCGAGGATATTGATTTTATAGCCGATT
TGGTTTACTACATATGCGAAAACGAACCAGAGGGTGCCATATTAGTGTTC
CTGCCTGGTTATGATAAGATCTCCCAACTGTACAATATTCTGGATAAACC
AAAGACTTCGAAGGGCCAAAGGTGGCGGGATCATATGGCCGTATTTCCAT
TACATTCCCTAATGCAGTCAGGGGAACAGCAGGCAGTGTTCAGGCGACCA
CCGGCGGGCCAGCGTAAGGTTATAATCTCTACAATTATCGCCGAAACGTC
GGTGACTATTGACGACGTGGTTTATGTGATAAACTCTGGCCGGACGAAAG
CCACCAACTATGACATCGAAACGAACATACAGTCGCTGGATGAGGTTTGG
GTGACCAAAGCAAATACCCAGCAGCGGAGAGGCAGGGCAGGTCGAGTGCG
CCCGGGCATATGCTATAATCTGTTCTCCCGCGCTAGAGAGGATCGCATGG
ACGATATTCCGACGCCGGAGATACTACGCTCCAAGCTGGAATCCATAATT
TTAAGCCTCAAGCTACTGCACATCGACGATCCGTATCGGTTCCTGCAAAC
TCTTATTAATGCCCCCAATCCCGAGGCCATAAAGATGGGAGTGGAACTGC
TAAAGCGCATTGAGGCGTTGGACCAGACGGGCACCCTTACTCCACTGGGC
ATGCACTTGGCAAAGCTGCCCATTGATCCGCAGATGGGAAAAATGATCCT
GATGTCGGCGCTCTTCTGTTGCTTGGATCCCATCACTTCGGCGGCGGCTG
CCTTGTCCTTTAAGTCCCCCTTCTACTCGCCTTTGGGTAAAGAGAGCCGA
GTGGATGAAATCAAGCGGAGAATGGCCCGAAATATGCGGAGCGATCACCT
GATGGTGCACAATACCATTATTGCGTACCGCGATAGCCGCTATTCGCACG
CGGAACGAGACTTCTGCTATAAGAATTTCCTCAGCTCCATGACACTGCAG
CAGTTGGAGAGGATGAAGAATCAGTTCAGTGAGCTGCTCTACAACTACAA
ATTTCTGGCATCGTCAAACTGCAAGGATGCTGCATCCAATAAGAATTCTG
AGAAGATTCCCCTACTGAGGGCCATTATAGGAGCGGGACTCTATCCCAAC
ATGGCTCACTTGCGAAAATCACGGCAGATCAAGAATAGAGTACGCGCTAT
CCACACCATGGCAACGGACGATGGACGCCGCGTTAACTTTCATCCCTCCT
CGGTGAACAGCGGAGAGAGTGGCTTCGACTCGGCATACTTTGTCTACTTT
CAGCGGCAGAAGTCCACCGATCTTTTCCTGCTCGACTCCACAATGGTTTT
TCCCATGGCACTGATCATTTTCGGAGATGGCGTGGAAGCGGGAGTGACCC
AAAATACGCCATATCTGTGCGTGGCCAAGACATATTACTTTAAATGCAAT
CGTGAAACTGCCGACGTAGTCATACAATTAAGAAGCAATTTGGAGAAACT
GCTGCTCAAAAAGGCTTTGTATCCGGCCCCGATCGAGGAGAACGGATATG
AAAAGCAGTTGATCAAAGCCATCGAATTGCTTCTCTCGCTAGACGAAAGA
CTCGGCGAGGACTATATTTCATCCGATGAAATCGATGACATAGCAAGCTT
TCTAGACCAT

BO10657.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:04:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG9323-RB 2829 CG9323-PB 1..2826 17..2842 14115 100 Plus
CG9323-RA 2829 CG9323-PA 1..2826 17..2842 14115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9323-RB 3125 CG9323-RB 204..3029 17..2842 14115 100 Plus
CG9323-RA 3019 CG9323-RA 98..2923 17..2842 14115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20755942..20757782 1857..17 9190 99.9 Minus
2L 23513712 2L 20755488..20755881 2250..1857 1970 100 Minus
2L 23513712 2L 20754993..20755266 2637..2364 1370 100 Minus
2L 23513712 2L 20754809..20754937 2766..2638 645 100 Minus
2L 23513712 2L 20755320..20755433 2364..2251 570 100 Minus
2L 23513712 2L 20754675..20754750 2842..2767 380 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:04:18 has no hits.

BO10657.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:17 Download gff for BO10657.complete
Subject Subject Range Query Range Percent Splice Strand
CG9323-RA 1..2829 17..2846 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:36 Download gff for BO10657.complete
Subject Subject Range Query Range Percent Splice Strand
CG9323-RA 206..3045 9..2853 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:09 Download gff for BO10657.complete
Subject Subject Range Query Range Percent Splice Strand
CG9323-RA 98..2923 17..2844 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:17 Download gff for BO10657.complete
Subject Subject Range Query Range Percent Splice Strand
CG9323-RA 206..3045 9..2853 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:48 Download gff for BO10657.complete
Subject Subject Range Query Range Percent Splice Strand
CG9323-RA 98..2923 17..2844 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:48 Download gff for BO10657.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20754993..20755265 2365..2637 100 <- Minus
2L 20755320..20755433 2251..2364 100 <- Minus
2L 20754673..20754750 2767..2844 97 <- Minus
2L 20754809..20754937 2638..2766 100 <- Minus
2L 20755488..20755880 1858..2250 100 <- Minus
2L 20755942..20757782 17..1857 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:09 Download gff for BO10657.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20754673..20754750 2767..2844 97 <- Minus
arm_2L 20754809..20754937 2638..2766 100 <- Minus
arm_2L 20754993..20755265 2365..2637 100 <- Minus
arm_2L 20755320..20755433 2251..2364 100 <- Minus
arm_2L 20755488..20755880 1858..2250 100 <- Minus
arm_2L 20755942..20757782 17..1857 99   Minus

BO10657.pep Sequence

Translation from 16 to 2860

> BO10657.pep
MQRDRDSSGSNARKGNRPPGLRGKDIGLYYRNLARQQKKDRGENAESKEP
QIRLGCNVSAPSGVLERVKELMEDYSRAPSRQNVDDKNVDAKFQQQFRHL
LSVNFEEFVAETKERNADLDWVNPKLDERLQLELGQRQLEENAKKRLEAR
KKLPTMKYADDIIQAVRENQVILIVGSTGCGKTTQVPQILLDDAISRGCA
SSCRIICTQPRRISAIAIAEWVSYERCESLGNSVGYQIRLESRKARERAS
ITYCTTGVLLQQLQSDPLMHNLSVLILDEIHERSVETDLLMGLLKVILPH
RPDLKVILMSATVREQDFCDYFNNCPMFRIEGVMFPVKMLYLEDVLSKTN
YEFQKFRDRRPKRDPPERRMKHEAMIEPYLRRIRNSYDSRVLDKLRLPES
EGCEDIDFIADLVYYICENEPEGAILVFLPGYDKISQLYNILDKPKTSKG
QRWRDHMAVFPLHSLMQSGEQQAVFRRPPAGQRKVIISTIIAETSVTIDD
VVYVINSGRTKATNYDIETNIQSLDEVWVTKANTQQRRGRAGRVRPGICY
NLFSRAREDRMDDIPTPEILRSKLESIILSLKLLHIDDPYRFLQTLINAP
NPEAIKMGVELLKRIEALDQTGTLTPLGMHLAKLPIDPQMGKMILMSALF
CCLDPITSAAAALSFKSPFYSPLGKESRVDEIKRRMARNMRSDHLMVHNT
IIAYRDSRYSHAERDFCYKNFLSSMTLQQLERMKNQFSELLYNYKFLASS
NCKDAASNKNSEKIPLLRAIIGAGLYPNMAHLRKSRQIKNRVRAIHTMAT
DDGRRVNFHPSSVNSGESGFDSAYFVYFQRQKSTDLFLLDSTMVFPMALI
IFGDGVEAGVTQNTPYLCVAKTYYFKCNRETADVVIQLRSNLEKLLLKKA
LYPAPIEENGYEKQLIKAIELLLSLDERLGEDYISSDEIDDIASFLDH

BO10657.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG9323-PB 942 CG9323-PB 1..942 1..942 4848 100 Plus
CG9323-PA 942 CG9323-PA 1..942 1..942 4848 100 Plus
CG1582-PB 1288 CG1582-PB 427..1263 127..903 1142 34.8 Plus
CG1582-PA 1288 CG1582-PA 427..1263 127..903 1142 34.8 Plus
mle-PC 936 CG11680-PC 10..721 136..853 1026 34.5 Plus