Clone Sequence Records
BO10657.3prime Sequence
836 bp (784 high quality bases) assembled on 2006-04-19
> BO10657.3prime
ATGGTCTAGAAAGCTTGCTATGTCATCGATTTCATCGGATGAAATATAGT
CCTCGCCGAGTCTTTCGTCTAGCGAGAGAAGCAATTCGATGGCTTTGATC
AACTGCTTTTCATATCCGTTCTCCTCGATCGGGGCCGGATACAAAGCCTT
TTTGAGCAGCAGTTTCTCCAAATTGCTTCTTAATTGTATGACTACGTCGG
CAGTTTCACGATTGCATTTAAAGTAATATGTCTTGGCCACGCACAGATAT
GGCGTATTTTGGGTCACTCCCGCTTCCACGCCATCTCCGAAAATGATCAG
TGCCATGGGAAAAACCATTGTGGAGTCGAGCAGGAAAAGATCGGTGGACT
TCTGCCGCTGAAAGTAGACAAAGTATGCCGAGTCGAAGCCACTCTCTCCG
CTGTTCACCGAGGAGGGATGAAAGTTAACGCGGCGTCCATCGTCCGTTGC
CATGGTGTGGATAGCGCGTACTCTATTCTTGATCTGCCGTGATTTTCGCA
AGTGAGCCATGTTGGGATAGAGTCCCGCTCCTATAATGGCCCTCAGTAGG
GGAATCTTCTCAGAATTCTTATTGGATGCAGCATCCTTGCAGTTTGACGA
TGCCAGAAATTTGTAGTTGTAGAGCAGCTCACTGAACTGATTCTTCATCC
TCTCCAACTGCTGCAGTGTCATGGAGCTGAGGAAATTCTTATAGCAGAAG
TCTCGTTCCGCGTGCGAATAGCGGCTATCGCGGTACGCAATAATGGTATT
GTGCACCATCAGGTGATCGCTCCGCATATTTCGGGCCATTCTCCGCTTGA
TTTCATCCACTCGGCTCTCTTTACCCAAGGCGAGTA
BO10657.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9323-PA | 2829 | CG9323-RA | 2017..2826 | 828..19 | 4050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:00:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9323-RB | 3125 | CG9323-RB | 2211..3029 | 836..19 | 4070 | 99.9 | Minus |
CG9323-RA | 3019 | CG9323-RA | 2105..2923 | 836..19 | 4070 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:00:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20754993..20755266 | 224..497 | 1370 | 100 | Plus |
2L | 23513712 | 2L | 20755488..20755705 | 611..828 | 1090 | 100 | Plus |
2L | 23513712 | 2L | 20754809..20754937 | 95..223 | 645 | 100 | Plus |
2L | 23513712 | 2L | 20755320..20755433 | 497..610 | 570 | 100 | Plus |
2L | 23513712 | 2L | 20754675..20754750 | 19..94 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:00:33 has no hits.
BO10657.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:24 Download gff for
BO10657.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-PA | 2009..2829 | 15..835 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:04 Download gff for
BO10657.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-PA | 2009..2829 | 15..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:40:13 Download gff for
BO10657.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-RA | 2106..2933 | 8..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:43:29 Download gff for
BO10657.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-RA | 2106..2933 | 8..835 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:29 Download gff for
BO10657.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20754665..20754750 | 8..94 | 94 | <- | Plus |
2L | 20754809..20754937 | 95..223 | 100 | <- | Plus |
2L | 20754993..20755265 | 224..496 | 100 | <- | Plus |
2L | 20755320..20755433 | 497..610 | 100 | <- | Plus |
2L | 20755488..20755713 | 611..835 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:40:13 Download gff for
BO10657.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20754665..20754750 | 8..94 | 94 | <- | Plus |
arm_2L | 20754809..20754937 | 95..223 | 100 | <- | Plus |
arm_2L | 20754993..20755265 | 224..496 | 100 | <- | Plus |
arm_2L | 20755320..20755433 | 497..610 | 100 | <- | Plus |
arm_2L | 20755488..20755713 | 611..835 | 99 | | Plus |
BO10657.5prime Sequence
912 bp (867 high quality bases) assembled on 2006-04-19
> BO10657.5prime
GAAGTTATCAGTCGACATGCAGCGCGATAGGGACTCATCCGGCTCCAACG
CCCGCAAGGGCAACCGCCCACCGGGTCTCAGGGGCAAGGACATCGGTTTG
TACTATCGCAATCTTGCCCGGCAGCAAAAGAAGGACAGAGGCGAGAATGC
GGAATCAAAGGAGCCGCAAATCCGCTTGGGCTGCAATGTCAGTGCTCCCA
GTGGAGTGCTTGAGCGTGTGAAGGAGTTAATGGAGGACTACAGCCGGGCA
CCGTCCAGACAAAATGTGGATGACAAAAATGTGGATGCCAAATTTCAGCA
ACAGTTTCGCCATCTTTTGAGTGTAAACTTTGAGGAATTCGTTGCGGAGA
CCAAGGAACGGAACGCGGACTTAGACTGGGTAAACCCCAAGCTGGACGAG
AGACTGCAGCTGGAACTGGGGCAACGCCAGTTGGAGGAGAATGCCAAGAA
ACGGCTAGAAGCACGGAAAAAACTGCCCACCATGAAATACGCCGACGATA
TTATCCAGGCTGTGCGGGAAAACCAAGTAATACTCATTGTAGGAAGCACT
GGATGTGGCAAGACCACTCAGGTGCCTCAAATCCTCCTCGACGACGCCAT
TTCCCGCGGATGTGCCTCGTCGTGCCGCATCATTTGCACTCAGCCACGAA
GGATTTCAGCCATCGCCATTGCCGAGTGGGTGAGTTACGAGCGCTGCGAG
AGCCTGGGCAATTCGGTAGGCTACCAGATTCGCCTAGAGAGCAGGAAGGC
CAGGGAGAGAGCCTCCATCACTTACTGCACCACAGGCGTTCTACTGCAGC
AGCTTCAATCGGACCCACTGATGCACAATCTAAGTGTCTTAATCCTGGAT
GAGATCCACGAACGCAGCGTGGAAACAGATCTCCTAATGGGGCTTCTAAA
GGTATCCTGCCC
BO10657.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9323-PA | 2829 | CG9323-RA | 1..887 | 17..903 | 4410 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:47:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9323-RB | 3125 | CG9323-RB | 204..1100 | 17..912 | 4445 | 99.8 | Plus |
CG9323-RA | 3019 | CG9323-RA | 98..994 | 17..912 | 4445 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:47:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20756896..20757782 | 903..17 | 4420 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:47:44 has no hits.
BO10657.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:25 Download gff for
BO10657.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-PA | 1..897 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:05 Download gff for
BO10657.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-PA | 1..897 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:02:43 Download gff for
BO10657.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-RA | 94..994 | 9..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:48:50 Download gff for
BO10657.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-RA | 94..994 | 9..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:48:50 Download gff for
BO10657.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20756886..20757786 | 9..912 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:02:43 Download gff for
BO10657.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20756886..20757786 | 9..912 | 99 | | Minus |
BO10657.complete Sequence
2860 bp (2860 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631829
> BO10657.complete
GAAGTTATCAGTCGACATGCAGCGCGATAGGGACTCATCCGGCTCCAACG
CCCGCAAGGGCAACCGCCCACCGGGTCTCAGGGGCAAGGACATCGGTTTG
TACTATCGCAATCTTGCCCGGCAGCAAAAGAAGGACAGAGGCGAGAATGC
GGAATCAAAGGAGCCGCAAATCCGCTTGGGCTGCAATGTCAGTGCTCCCA
GTGGAGTGCTTGAGCGTGTGAAGGAGTTAATGGAGGACTACAGCCGGGCA
CCGTCCAGACAAAATGTGGATGACAAAAATGTGGATGCCAAATTTCAGCA
ACAGTTTCGCCATCTTTTGAGTGTAAACTTTGAGGAATTCGTTGCGGAGA
CCAAGGAACGGAACGCGGACTTAGACTGGGTAAACCCCAAGCTGGACGAG
AGACTGCAGCTGGAACTGGGGCAACGCCAGTTGGAGGAGAATGCCAAGAA
ACGGCTAGAAGCACGGAAAAAACTGCCCACCATGAAATACGCCGACGATA
TTATCCAGGCTGTGCGGGAAAACCAAGTAATACTCATTGTAGGAAGCACT
GGATGTGGCAAGACCACTCAGGTGCCTCAAATCCTCCTCGACGACGCCAT
TTCCCGCGGATGTGCCTCGTCGTGCCGCATCATTTGCACTCAGCCACGAA
GGATTTCAGCCATCGCCATTGCCGAGTGGGTGAGTTACGAGCGCTGCGAG
AGCCTGGGCAATTCGGTAGGCTACCAGATTCGCCTAGAGAGCAGGAAGGC
CAGGGAGAGAGCCTCCATCACTTACTGCACCACAGGCGTTCTACTGCAGC
AGCTTCAATCGGACCCACTGATGCACAATCTAAGTGTCTTAATCCTGGAT
GAGATCCACGAACGCAGCGTGGAAACAGATCTCCTAATGGGTCTTCTAAA
GGTTATCCTGCCCCACAGACCCGATCTAAAGGTGATCCTGATGAGTGCAA
CTGTACGGGAGCAGGATTTTTGTGACTACTTTAACAACTGTCCCATGTTC
CGCATCGAGGGCGTGATGTTTCCCGTGAAGATGCTCTACTTGGAGGATGT
TCTGTCCAAGACGAACTACGAGTTCCAAAAGTTCCGCGATCGTCGTCCCA
AGCGGGATCCGCCTGAGCGCAGGATGAAGCACGAGGCTATGATAGAACCG
TATCTGCGACGCATCAGGAACTCGTACGATAGTCGTGTGCTCGACAAGCT
GCGTTTGCCGGAGTCGGAGGGCTGCGAGGATATTGATTTTATAGCCGATT
TGGTTTACTACATATGCGAAAACGAACCAGAGGGTGCCATATTAGTGTTC
CTGCCTGGTTATGATAAGATCTCCCAACTGTACAATATTCTGGATAAACC
AAAGACTTCGAAGGGCCAAAGGTGGCGGGATCATATGGCCGTATTTCCAT
TACATTCCCTAATGCAGTCAGGGGAACAGCAGGCAGTGTTCAGGCGACCA
CCGGCGGGCCAGCGTAAGGTTATAATCTCTACAATTATCGCCGAAACGTC
GGTGACTATTGACGACGTGGTTTATGTGATAAACTCTGGCCGGACGAAAG
CCACCAACTATGACATCGAAACGAACATACAGTCGCTGGATGAGGTTTGG
GTGACCAAAGCAAATACCCAGCAGCGGAGAGGCAGGGCAGGTCGAGTGCG
CCCGGGCATATGCTATAATCTGTTCTCCCGCGCTAGAGAGGATCGCATGG
ACGATATTCCGACGCCGGAGATACTACGCTCCAAGCTGGAATCCATAATT
TTAAGCCTCAAGCTACTGCACATCGACGATCCGTATCGGTTCCTGCAAAC
TCTTATTAATGCCCCCAATCCCGAGGCCATAAAGATGGGAGTGGAACTGC
TAAAGCGCATTGAGGCGTTGGACCAGACGGGCACCCTTACTCCACTGGGC
ATGCACTTGGCAAAGCTGCCCATTGATCCGCAGATGGGAAAAATGATCCT
GATGTCGGCGCTCTTCTGTTGCTTGGATCCCATCACTTCGGCGGCGGCTG
CCTTGTCCTTTAAGTCCCCCTTCTACTCGCCTTTGGGTAAAGAGAGCCGA
GTGGATGAAATCAAGCGGAGAATGGCCCGAAATATGCGGAGCGATCACCT
GATGGTGCACAATACCATTATTGCGTACCGCGATAGCCGCTATTCGCACG
CGGAACGAGACTTCTGCTATAAGAATTTCCTCAGCTCCATGACACTGCAG
CAGTTGGAGAGGATGAAGAATCAGTTCAGTGAGCTGCTCTACAACTACAA
ATTTCTGGCATCGTCAAACTGCAAGGATGCTGCATCCAATAAGAATTCTG
AGAAGATTCCCCTACTGAGGGCCATTATAGGAGCGGGACTCTATCCCAAC
ATGGCTCACTTGCGAAAATCACGGCAGATCAAGAATAGAGTACGCGCTAT
CCACACCATGGCAACGGACGATGGACGCCGCGTTAACTTTCATCCCTCCT
CGGTGAACAGCGGAGAGAGTGGCTTCGACTCGGCATACTTTGTCTACTTT
CAGCGGCAGAAGTCCACCGATCTTTTCCTGCTCGACTCCACAATGGTTTT
TCCCATGGCACTGATCATTTTCGGAGATGGCGTGGAAGCGGGAGTGACCC
AAAATACGCCATATCTGTGCGTGGCCAAGACATATTACTTTAAATGCAAT
CGTGAAACTGCCGACGTAGTCATACAATTAAGAAGCAATTTGGAGAAACT
GCTGCTCAAAAAGGCTTTGTATCCGGCCCCGATCGAGGAGAACGGATATG
AAAAGCAGTTGATCAAAGCCATCGAATTGCTTCTCTCGCTAGACGAAAGA
CTCGGCGAGGACTATATTTCATCCGATGAAATCGATGACATAGCAAGCTT
TCTAGACCAT
BO10657.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:04:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9323-RB | 2829 | CG9323-PB | 1..2826 | 17..2842 | 14115 | 100 | Plus |
CG9323-RA | 2829 | CG9323-PA | 1..2826 | 17..2842 | 14115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9323-RB | 3125 | CG9323-RB | 204..3029 | 17..2842 | 14115 | 100 | Plus |
CG9323-RA | 3019 | CG9323-RA | 98..2923 | 17..2842 | 14115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20755942..20757782 | 1857..17 | 9190 | 99.9 | Minus |
2L | 23513712 | 2L | 20755488..20755881 | 2250..1857 | 1970 | 100 | Minus |
2L | 23513712 | 2L | 20754993..20755266 | 2637..2364 | 1370 | 100 | Minus |
2L | 23513712 | 2L | 20754809..20754937 | 2766..2638 | 645 | 100 | Minus |
2L | 23513712 | 2L | 20755320..20755433 | 2364..2251 | 570 | 100 | Minus |
2L | 23513712 | 2L | 20754675..20754750 | 2842..2767 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:04:18 has no hits.
BO10657.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:17 Download gff for
BO10657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-RA | 1..2829 | 17..2846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:36 Download gff for
BO10657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-RA | 206..3045 | 9..2853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:09 Download gff for
BO10657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-RA | 98..2923 | 17..2844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:17 Download gff for
BO10657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-RA | 206..3045 | 9..2853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:48 Download gff for
BO10657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9323-RA | 98..2923 | 17..2844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:48 Download gff for
BO10657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20754993..20755265 | 2365..2637 | 100 | <- | Minus |
2L | 20755320..20755433 | 2251..2364 | 100 | <- | Minus |
2L | 20754673..20754750 | 2767..2844 | 97 | <- | Minus |
2L | 20754809..20754937 | 2638..2766 | 100 | <- | Minus |
2L | 20755488..20755880 | 1858..2250 | 100 | <- | Minus |
2L | 20755942..20757782 | 17..1857 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:09 Download gff for
BO10657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20754673..20754750 | 2767..2844 | 97 | <- | Minus |
arm_2L | 20754809..20754937 | 2638..2766 | 100 | <- | Minus |
arm_2L | 20754993..20755265 | 2365..2637 | 100 | <- | Minus |
arm_2L | 20755320..20755433 | 2251..2364 | 100 | <- | Minus |
arm_2L | 20755488..20755880 | 1858..2250 | 100 | <- | Minus |
arm_2L | 20755942..20757782 | 17..1857 | 99 | | Minus |
BO10657.pep Sequence
Translation from 16 to 2860
> BO10657.pep
MQRDRDSSGSNARKGNRPPGLRGKDIGLYYRNLARQQKKDRGENAESKEP
QIRLGCNVSAPSGVLERVKELMEDYSRAPSRQNVDDKNVDAKFQQQFRHL
LSVNFEEFVAETKERNADLDWVNPKLDERLQLELGQRQLEENAKKRLEAR
KKLPTMKYADDIIQAVRENQVILIVGSTGCGKTTQVPQILLDDAISRGCA
SSCRIICTQPRRISAIAIAEWVSYERCESLGNSVGYQIRLESRKARERAS
ITYCTTGVLLQQLQSDPLMHNLSVLILDEIHERSVETDLLMGLLKVILPH
RPDLKVILMSATVREQDFCDYFNNCPMFRIEGVMFPVKMLYLEDVLSKTN
YEFQKFRDRRPKRDPPERRMKHEAMIEPYLRRIRNSYDSRVLDKLRLPES
EGCEDIDFIADLVYYICENEPEGAILVFLPGYDKISQLYNILDKPKTSKG
QRWRDHMAVFPLHSLMQSGEQQAVFRRPPAGQRKVIISTIIAETSVTIDD
VVYVINSGRTKATNYDIETNIQSLDEVWVTKANTQQRRGRAGRVRPGICY
NLFSRAREDRMDDIPTPEILRSKLESIILSLKLLHIDDPYRFLQTLINAP
NPEAIKMGVELLKRIEALDQTGTLTPLGMHLAKLPIDPQMGKMILMSALF
CCLDPITSAAAALSFKSPFYSPLGKESRVDEIKRRMARNMRSDHLMVHNT
IIAYRDSRYSHAERDFCYKNFLSSMTLQQLERMKNQFSELLYNYKFLASS
NCKDAASNKNSEKIPLLRAIIGAGLYPNMAHLRKSRQIKNRVRAIHTMAT
DDGRRVNFHPSSVNSGESGFDSAYFVYFQRQKSTDLFLLDSTMVFPMALI
IFGDGVEAGVTQNTPYLCVAKTYYFKCNRETADVVIQLRSNLEKLLLKKA
LYPAPIEENGYEKQLIKAIELLLSLDERLGEDYISSDEIDDIASFLDH
BO10657.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9323-PB | 942 | CG9323-PB | 1..942 | 1..942 | 4848 | 100 | Plus |
CG9323-PA | 942 | CG9323-PA | 1..942 | 1..942 | 4848 | 100 | Plus |
CG1582-PB | 1288 | CG1582-PB | 427..1263 | 127..903 | 1142 | 34.8 | Plus |
CG1582-PA | 1288 | CG1582-PA | 427..1263 | 127..903 | 1142 | 34.8 | Plus |
mle-PC | 936 | CG11680-PC | 10..721 | 136..853 | 1026 | 34.5 | Plus |