Clone BO10658 Report

Search the DGRC for BO10658

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:106
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptIndy-2-RA
Protein status:BO10658.pep: validated full length
Sequenced Size:1720

Clone Sequence Records

BO10658.3prime Sequence

902 bp (805 high quality bases) assembled on 2006-04-19

> BO10658.3prime
ATGGTCTAGAAAGCTTGCTATTTTTGTTTGATTCTTAATTTCCTTTGCCC
AATCTGGAAAGCTTTTCGATTCTGGAAATATTATCAATCCCCAGGTATTC
GTGTTCACCAGAGCCACAGAAATCCCGATAATGGTGGGCACTATACCGCA
ACAGGCAAAGTATTTGGTCTTAATATGTGCATATTGGGTAACAATTGCAT
TTGGCGGCGTGCTCACGGGTAAAAAGTAGACCATGCTAATTCCCAAACAA
GCTGGCAGAGTTAAAATCAAAGGATGTAGCTCCAGAGCGAGAGACATTTC
ACATAAAATTGGTAGCACAATGTTCGCCACAACAACGTTGGCGTTGAAAG
CGGAGAAAAAATTGGCCAATACAAACGTGATCGACTGCACCACAATATTT
GGCAATCCGATGAGGACTTGCATGGCCTTGGAGATCATTATGTTCAAACC
AGTTTCCCTGCTGGCCACGGCCAAGGCAAAGCCACCACCCAGCAGAAATA
ATAGGCCCCAGGGAATGTTGCGTAAAACATATTCCCACGATAATATCGCA
TCGATCGCCTGGGCGGTAAACGGACCTTTACCGCAACAGTACTTGAAGAA
CGTATATTGGGTGGGCAAGGCAAAAATCAGTAGAACAATAAATGACAGTC
CCGATGCACTTCCCACTACCTTTCTATTGATCAAATCGCTCCAACCCGGA
ACGAATCCCGGCTTGCGGGTAATTAGGAGCACTATCATAAAAGCAAAGGC
GATGGCCATTTGAATTTCATGACAGCTCATTGGGCCCAAATCAATATGGC
GCTGTCGCAAAACATCCTCCATCAGTTTCCTGTTTGTGTTGGCCTCCGCA
ATGATTTTACCGGTTTTACTATTTGGTCGAAACAGTCCCATGTGCGTGAT
GA

BO10658.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG33933-PA 1689 Indy-2-RA 803..1686 902..19 4420 100 Minus
CG33933-PB 1689 Indy-2-RB 803..1686 902..19 4420 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
Indy-2-RB 1855 CG33933-RB 871..1754 902..19 4420 100 Minus
Indy-2-RA 4064 CG33933-RA 900..1783 902..19 4420 100 Minus
CG33934-RE 4064 CG33934-RE 900..1783 902..19 4420 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20044222..20044454 902..670 1165 100 Minus
3R 32079331 3R 20044980..20045174 489..295 975 100 Minus
3R 32079331 3R 20045229..20045368 295..156 700 100 Minus
3R 32079331 3R 20045428..20045565 156..19 690 100 Minus
3R 32079331 3R 20044527..20044623 670..574 485 100 Minus
3R 32079331 3R 20044678..20044768 577..487 455 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:37:53 has no hits.

BO10658.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:26 Download gff for BO10658.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33933-PA 804..1689 15..901 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:06 Download gff for BO10658.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33933-PB 804..1689 15..901 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:01:51 Download gff for BO10658.3prime
Subject Subject Range Query Range Percent Splice Strand
Indy-2-RB 872..1757 15..901 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:53 Download gff for BO10658.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33934-RE 901..1786 15..901 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:53 Download gff for BO10658.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20045230..20045367 157..294 100 -> Minus
3R 20045428..20045568 15..156 98   Minus
3R 20044223..20044453 671..901 100 -> Minus
3R 20044527..20044621 576..670 100 -> Minus
3R 20044680..20044766 489..575 100 -> Minus
3R 20044981..20045174 295..488 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:01:51 Download gff for BO10658.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15869945..15870175 671..901 100 -> Minus
arm_3R 15870249..15870343 576..670 100 -> Minus
arm_3R 15870402..15870488 489..575 100 -> Minus
arm_3R 15870703..15870896 295..488 100 -> Minus
arm_3R 15870952..15871089 157..294 100 -> Minus
arm_3R 15871150..15871290 15..156 98   Minus

BO10658.5prime Sequence

928 bp (853 high quality bases) assembled on 2006-04-19

> BO10658.5prime
GAAGTTATCAGTCGACATGGCAGAACCAGGAGAACAACGAAAATTCGTAT
TGGGACGCTGTTGTATTTTCCACTGGCGCGGGAAGGCTTCAATAATTATA
CCCTTGATCACACTGCCAATTCTTATTTATGGCTTTCAGACCGACATGGC
CGAGTTCAAGTGCCTGTGGCTTATTGTTACCATGGCCCTGCTGTGGATCA
CCGAAACCCTACCGATATATGTCACGGCATTGTTTCCCCTTGTCTTTTGC
CCTCTCCTTGGTCTTGTGAATGCCTCTATAGTCTGCAAACAGTACTTCAC
CGACACCATTGTGGTATTCCTTGGTGGGCTTATTGTGGCCTTGGGAATTG
AGTACAGTAATCTACACACCAGAATTGCCCTGAGGGTCATTCGGATTGTC
GGTGGAAGTCCTAGACGTTTATTCGTAGGCTTGATGAGCGTGAGCACGTT
TATGGGATTGTGGATATCCAACTCAGCCGGAACGGCCATGATGTGCCCCA
TTGTCAAAGCGCTGGTCAATGAATTGGATACCAACAAAATATTTCCCGTT
TATATGACGCAAGAGGAAGAACCAGTAGAGGAGGGAGAACCACCACATCC
GTCGAAGATAACAGTAGCCTTCTACGCTGGCATAGCCTACGCCTCCTCCA
TTGGGGGACTGGGAACACTGATTGGCACAGGAACGAATCTGGTCTTTAGG
GGCATATACACGGAGCGATTTCCCACTTCTACGGTGGAGATTACATTTGC
CAACTTTATGTTCTACTCGATACCCTTGATGGTGATTGTAAACGTTACGC
TGGTTATCATAGCTTTCCTCATCACGCACATGGGACTGTTTCGACCAAAT
AGTAAAACCGGTAAAATCATTGCGGAGGCCAACACAAACAGGAAACTGAT
GGAGGATGTTTTGCGACAGCGCCATATT

BO10658.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG33933-PA 1689 Indy-2-RA 1..912 17..928 4560 100 Plus
CG33933-PB 1689 Indy-2-RB 1..912 17..928 4560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
Indy-2-RB 1855 CG33933-RB 69..980 17..928 4560 100 Plus
Indy-2-RA 4064 CG33933-RA 98..1009 17..928 4560 100 Plus
CG33934-RE 4064 CG33934-RE 98..1009 17..928 4560 100 Plus
Indy-2-RA 4064 CG33933-RA 2552..2696 461..605 260 79.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20044118..20044331 715..928 1070 100 Plus
3R 32079331 3R 20043283..20043432 268..417 750 100 Plus
3R 32079331 3R 20043934..20044060 589..715 635 100 Plus
3R 32079331 3R 20043103..20043219 152..268 585 100 Plus
3R 32079331 3R 20043624..20043739 417..532 580 100 Plus
3R 32079331 3R 20042934..20043047 39..152 570 100 Plus
3R 32079331 3R 20043822..20043877 533..588 280 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:30:06 has no hits.

BO10658.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:27 Download gff for BO10658.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33933-PA 1..912 17..928 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:07 Download gff for BO10658.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33933-PB 1..912 17..928 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:50:44 Download gff for BO10658.5prime
Subject Subject Range Query Range Percent Splice Strand
Indy-2-RB 69..980 17..928 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:01 Download gff for BO10658.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33934-RE 98..1009 17..928 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:01 Download gff for BO10658.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20042854..20042876 17..39 100 -> Plus
3R 20042935..20043046 40..151 100 -> Plus
3R 20043103..20043219 152..268 100 -> Plus
3R 20043284..20043432 269..417 100 -> Plus
3R 20043625..20043739 418..532 100 -> Plus
3R 20043822..20043877 533..588 100 -> Plus
3R 20043934..20044059 589..714 100 -> Plus
3R 20044118..20044331 715..928 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:50:44 Download gff for BO10658.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15868657..15868768 40..151 100 -> Plus
arm_3R 15868825..15868941 152..268 100 -> Plus
arm_3R 15869006..15869154 269..417 100 -> Plus
arm_3R 15869347..15869461 418..532 100 -> Plus
arm_3R 15868576..15868598 17..39 100 -> Plus
arm_3R 15869544..15869599 533..588 100 -> Plus
arm_3R 15869656..15869781 589..714 100 -> Plus
arm_3R 15869840..15870053 715..928 100   Plus

BO10658.complete Sequence

1720 bp (1720 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631830

> BO10658.complete
GAAGTTATCAGTCGACATGGCAGAACCAGGAGAACAACGAAAATTCGTAT
TGGGACGCTGTTGTATTTTCCACTGGCGCGGGAAGGCTTCAATAATTATA
CCCTTGATCACACTGCCAATTCTTATTTATGGCTTTCAGACCGACATGGC
CGAGTTCAAGTGCCTGTGGCTTATTGTTACCATGGCCCTGCTGTGGATCA
CCGAAACCCTACCGATATATGTCACGGCATTGTTTCCCCTTGTCTTTTGC
CCTCTCCTTGGTCTTGTGAATGCCTCTATAGTCTGCAAACAGTACTTCAC
CGACACCATTGTGGTATTCCTTGGTGGGCTTATTGTGGCCTTGGGAATTG
AGTACAGTAATCTACACACCAGAATTGCCCTGAGGGTCATTCGGATTGTC
GGTGGAAGTCCTAGACGTTTATTCGTAGGCTTGATGAGCGTGAGCACGTT
TATGGGATTGTGGATATCCAACTCAGCCGGAACGGCCATGATGTGCCCCA
TTGTCAAAGCGCTGGTCAATGAATTGGATACCAACAAAATATTTCCCGTT
TATATGACGCAAGAGGAAGAACCAGTAGAGGAGGGAGAACCACCACATCC
GTCGAAGATAACAGTAGCCTTCTACGCTGGCATAGCCTACGCCTCCTCCA
TTGGGGGACTGGGAACACTGATTGGCACAGGAACGAATCTGGTCTTTAGG
GGCATATACACGGAGCGATTTCCCACTTCTACGGTGGAGATTACATTTGC
CAACTTTATGTTCTACTCGATACCCTTGATGGTGATTGTAAACGTTACGC
TGGTTATCATAGCTTTCCTCATCACGCACATGGGACTGTTTCGACCAAAT
AGTAAAACCGGTAAAATCATTGCGGAGGCCAACACAAACAGGAAACTGAT
GGAGGATGTTTTGCGACAGCGCCATATTGATTTGGGCCCAATGAGCTGTC
ATGAAATTCAAATGGCCATCGCCTTTGCTTTTATGATAGTGCTCCTAATT
ACCCGCAAGCCGGGATTCGTTCCGGGTTGGAGCGATTTGATCAATAGAAA
GGTAGTGGGAAGTGCATCGGGACTGTCATTTATTGTTCTACTGATTTTTG
CCTTGCCCACCCAATATACGTTCTTCAAGTACTGTTGCGGTAAAGGTCCG
TTTACCGCCCAGGCGATCGATGCGATATTATCGTGGGAATATGTTTTACG
CAACATTCCCTGGGGCCTATTATTTCTGCTGGGTGGTGGCTTTGCCTTGG
CCGTGGCCAGCAGGGAAACTGGTTTGAACATAATGATCTCCAAGGCCATG
CAAGTCCTCATCGGATTGCCAAATATTGTGGTGCAGTCGATCACGTTTGT
ATTGGCCAATTTTTTCTCCGCTTTCAACGCCAACGTTGTTGTGGCGAACA
TTGTGCTACCAATTTTATGTGAAATGTCTCTCGCTCTGGAGCTACATCCT
TTGATTTTAACTCTGCCAGCTTGTTTGGGAATTAGCATGGTCTACTTTTT
ACCCGTGAGCACGCCGCCAAATGCAATTGTTACCCAATATGCACATATTA
AGACCAAATACTTTGCCTGTTGCGGTATAGTGCCCACCATTATCGGGATT
TCTGTGGCTCTGGTGAACACGAATACCTGGGGATTGATAATATTTCCAGA
ATCGAAAAGCTTTCCAGATTGGGCAAAGGAAATTAAGAATCAAACAAAAA
TAGCAAGCTTTCTAGACCAT

BO10658.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
Indy-2-RB 1689 CG33933-PB 1..1686 17..1702 8430 100 Plus
Indy-2-RA 1689 CG33933-PA 1..1686 17..1702 8430 100 Plus
CG33934-RE 1671 CG33934-PE 451..595 461..605 260 78.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
Indy-2-RB 1855 CG33933-RB 69..1754 17..1702 8430 100 Plus
Indy-2-RA 4064 CG33933-RA 98..1783 17..1702 8430 100 Plus
CG33934-RE 4064 CG33934-RE 98..1783 17..1702 8430 100 Plus
Indy-2-RA 4064 CG33933-RA 2552..2696 461..605 260 78.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20044118..20044454 715..1051 1685 100 Plus
3R 32079331 3R 20044980..20045174 1232..1426 975 100 Plus
3R 32079331 3R 20043283..20043432 268..417 750 100 Plus
3R 32079331 3R 20045229..20045368 1426..1565 700 100 Plus
3R 32079331 3R 20045428..20045565 1565..1702 690 100 Plus
3R 32079331 3R 20043934..20044060 589..715 635 100 Plus
3R 32079331 3R 20043103..20043219 152..268 585 100 Plus
3R 32079331 3R 20043624..20043739 417..532 580 100 Plus
3R 32079331 3R 20042934..20043047 39..152 570 100 Plus
3R 32079331 3R 20044527..20044623 1051..1147 485 100 Plus
3R 32079331 3R 20044678..20044768 1144..1234 455 100 Plus
3R 32079331 3R 20043822..20043877 533..588 280 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:38:34 has no hits.

BO10658.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:05 Download gff for BO10658.complete
Subject Subject Range Query Range Percent Splice Strand
Indy-2-RB 1..1689 17..1706 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:31 Download gff for BO10658.complete
Subject Subject Range Query Range Percent Splice Strand
Indy-2-RB 69..1757 17..1706 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:30 Download gff for BO10658.complete
Subject Subject Range Query Range Percent Splice Strand
Indy-2-RB 69..1743 17..1691 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:05 Download gff for BO10658.complete
Subject Subject Range Query Range Percent Splice Strand
Indy-2-RB 69..1757 17..1706 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:08 Download gff for BO10658.complete
Subject Subject Range Query Range Percent Splice Strand
CG33934-RE 98..1772 17..1691 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:08 Download gff for BO10658.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20043284..20043432 269..417 100 -> Plus
3R 20043625..20043739 418..532 100 -> Plus
3R 20043822..20043877 533..588 100 -> Plus
3R 20043934..20044059 589..714 100 -> Plus
3R 20044118..20044453 715..1050 100 -> Plus
3R 20044527..20044621 1051..1145 100 -> Plus
3R 20044680..20044766 1146..1232 100 -> Plus
3R 20044981..20045174 1233..1426 100 -> Plus
3R 20045230..20045367 1427..1564 100 -> Plus
3R 20045428..20045554 1565..1691 100   Plus
3R 20042854..20042876 17..39 100 -> Plus
3R 20042935..20043046 40..151 100 -> Plus
3R 20043103..20043219 152..268 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:30 Download gff for BO10658.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15870952..15871089 1427..1564 100 -> Plus
arm_3R 15871150..15871276 1565..1691 100   Plus
arm_3R 15869347..15869461 418..532 100 -> Plus
arm_3R 15869544..15869599 533..588 100 -> Plus
arm_3R 15869656..15869781 589..714 100 -> Plus
arm_3R 15869840..15870175 715..1050 100 -> Plus
arm_3R 15870249..15870343 1051..1145 100 -> Plus
arm_3R 15868576..15868598 17..39 100 -> Plus
arm_3R 15868657..15868768 40..151 100 -> Plus
arm_3R 15868825..15868941 152..268 100 -> Plus
arm_3R 15869006..15869154 269..417 100 -> Plus
arm_3R 15870402..15870488 1146..1232 100 -> Plus
arm_3R 15870703..15870896 1233..1426 100 -> Plus

BO10658.pep Sequence

Translation from 16 to 1720

> BO10658.pep
MAEPGEQRKFVLGRCCIFHWRGKASIIIPLITLPILIYGFQTDMAEFKCL
WLIVTMALLWITETLPIYVTALFPLVFCPLLGLVNASIVCKQYFTDTIVV
FLGGLIVALGIEYSNLHTRIALRVIRIVGGSPRRLFVGLMSVSTFMGLWI
SNSAGTAMMCPIVKALVNELDTNKIFPVYMTQEEEPVEEGEPPHPSKITV
AFYAGIAYASSIGGLGTLIGTGTNLVFRGIYTERFPTSTVEITFANFMFY
SIPLMVIVNVTLVIIAFLITHMGLFRPNSKTGKIIAEANTNRKLMEDVLR
QRHIDLGPMSCHEIQMAIAFAFMIVLLITRKPGFVPGWSDLINRKVVGSA
SGLSFIVLLIFALPTQYTFFKYCCGKGPFTAQAIDAILSWEYVLRNIPWG
LLFLLGGGFALAVASRETGLNIMISKAMQVLIGLPNIVVQSITFVLANFF
SAFNANVVVANIVLPILCEMSLALELHPLILTLPACLGISMVYFLPVSTP
PNAIVTQYAHIKTKYFACCGIVPTIIGISVALVNTNTWGLIIFPESKSFP
DWAKEIKNQTKIASFLDH

BO10658.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
Indy-2-PB 562 CG33933-PB 1..562 1..562 2897 100 Plus
Indy-2-PA 562 CG33933-PA 1..562 1..562 2897 100 Plus
CG33934-PE 556 CG33934-PE 16..555 14..553 1643 55 Plus
CG33934-PD 555 CG33934-PD 16..554 14..553 1625 54.8 Plus
CG33934-PC 555 CG33934-PC 16..554 14..553 1625 54.8 Plus