Clone BO10659 Report

Search the DGRC for BO10659

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:106
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptTreh-RA
Protein status:BO10659.pep: validated full length
Sequenced Size:1714

Clone Sequence Records

BO10659.3prime Sequence

891 bp (872 high quality bases) assembled on 2006-04-19

> BO10659.3prime
ATGGTCTAGAAAGCTTGCCTGCCGCTTTTCACCTGCTAGGCAGCCACAAC
CGGATCCAATGGAAATGTCGCGCCCGTGCTTGCTCAGCCACTCGATGATC
ACACCGTTGGACCAACCGAATCCAGTCTGTACCTCGTACTCGCCACCGCC
GCCTCCAACTCCGAACTCATCGGCGTTGTACTTCTCGTACATGTGCCTGT
CCTTGCTAAACGCCGCAAAGTTTGTCTTCACCCACCTGGTGGCCCACTTC
AGTGACATATTCTTGGCCTCGGGAGTGTTCAGGTTGTTTAGGCCCTCGAC
CAGGATGTACTGCATCGGTGCCCACACATTGGGGGCATCCCACTGTTCTC
CGGTGTAGCTCAGCGTGTTGGGAACTCCGCCAGGGAAGCTGTCCAGCTTG
TTCCTCTCAATGTAGGCCATAACCGAAGCCGATATCTTTTCGGACTCCGA
AATGTTGAAGGCCTTCACCCACAGTGGAGATAGATTGGTGGGCGTGTAGT
AATCGCGAGGCTTCTGGTTAATCATATCGTAGTCCAACCAGACACCGGCC
TCCTCGTTCCACAAAACTTCTTGGATACCCAGAAGGAGTTTCTCGGCCTT
GGTCTCGTATTCGGTGACCTTTTTGGTGTTGCCCGCTTTGGAATGGAACT
CGGCAATCAACTTGGCGTTCCAGTAGAGATAGGCATTCAGGTCGACGGGC
ACAATGGAGGTGGTGCTCAGAGCGCTCCGGTTGCCATCATTGGTTCCAGT
CGGTGAGATGAACCAGCGCGAGCTAAAGTCCATGCCCGATTCGGCGCCTG
CCTTGAGTTCACTGTAATGCAGTTCCTTGGCCTCATCCGTGGGGAACTCC
CTCGCGGTCTCACATCCTCTCGGTAGGATTCTGGTCGCGGT

BO10659.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9364-PE 1683 Treh-RE 849..1680 850..19 4160 100 Minus
CG9364-PD 1683 Treh-RD 849..1680 850..19 4160 100 Minus
CG9364-PA 1683 Treh-RA 849..1680 850..19 4160 100 Minus
CG9364-PB 1548 Treh-RB 714..1545 850..19 4160 100 Minus
CG9364-PC 1791 Treh-RC 957..1788 850..19 4160 100 Minus
CG9364-PF 1791 Treh-RF 957..1788 850..19 4160 100 Minus
CG9364-PE 1683 Treh-RE 807..837 891..861 155 100 Minus
CG9364-PD 1683 Treh-RD 807..837 891..861 155 100 Minus
CG9364-PA 1683 Treh-RA 807..837 891..861 155 100 Minus
CG9364-PB 1548 Treh-RB 672..702 891..861 155 100 Minus
CG9364-PC 1791 Treh-RC 915..945 891..861 155 100 Minus
CG9364-PF 1791 Treh-RF 915..945 891..861 155 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
Treh-RG 2991 CG9364-RG 1290..2163 891..19 4300 99.7 Minus
Treh-RF 2822 CG9364-RF 1121..1994 891..19 4300 99.7 Minus
Treh-RC 2928 CG9364-RC 1227..2100 891..19 4300 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21086014..21086725 891..181 3450 99.3 Minus
2R 25286936 2R 21086788..21086951 182..19 820 100 Minus
Blast to na_te.dros performed on 2015-02-03 16:29:10 has no hits.

BO10659.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:28 Download gff for BO10659.3prime
Subject Subject Range Query Range Percent Splice Strand
Treh-PA 807..1683 18..891 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:08 Download gff for BO10659.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9364-PC 915..1791 18..891 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:27:17 Download gff for BO10659.3prime
Subject Subject Range Query Range Percent Splice Strand
Treh-RC 1227..2100 19..891 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:54:36 Download gff for BO10659.3prime
Subject Subject Range Query Range Percent Splice Strand
Treh-RC 1227..2100 19..891 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:54:36 Download gff for BO10659.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21086014..21086725 181..891 99 -> Minus
2R 21086790..21086951 19..180 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:27:17 Download gff for BO10659.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16973519..16974230 181..891 99 -> Minus
arm_2R 16974295..16974456 19..180 100   Minus

BO10659.5prime Sequence

911 bp (830 high quality bases) assembled on 2006-04-19

> BO10659.5prime
GAAGTTATCAGTCGACATGGCCTCTCCAGCGAATCCATCGAGCAATCACA
AAATGAACGGAAATGGTAAAATCTACTGCGAGGGCAATCTGCTGCACACC
ATCCAAACGGCAGTGCCCAAACTATTTGCGGATTCGAAAACGTTTGTGGA
CATGAAGCTGAACAATTCGCCCGACAAGACCCTCGAGGACTTTAATGCCA
TGATGGAGGCCAAGAATCAGACGCCAAGCAGTGAGGATCTCAAGCAGTTT
GTCGATAAGTACTTCAGTGCACCGGGCACCGAGCTTGAGAAATGGACGCC
CACCGACTGGAAGGAGAATCCCAGTTTCCTCGACCTGATCTCCGACCCAG
ATCTGAAGCAATGGGGCGTCGAGCTGAATAGCATTTGGAAGGACTTGGGA
CGCAAAATGAAGGACGAGGTGTCAAAGAATCCCGAATACTACTCAATCAT
TCCCGTGCCAAATCCAGTGATCGTGCCCGGCGGTCGTTTCATTGAGTTCT
ACTACTGGGACTCCTACTGGATCATCCGTGGACTTCTCTACAGCCAGATG
TTTGACACCGCGCGCGGCATGATTGAGAACTTCTTTTCCATTGTCAATCG
GTTCGGTTTTATTCCAAACGGCGGTCGAGTCTACTACCACGGTCGCTCCC
AGCCGCCACTTCTAACCGGTATGGTCAAGTCGTACGTGGACTTCACCAAC
GATGACAAGTTCGCCATCGATGCCCTGGACACGCTGGAGCACGAGTTCGA
GTTCTTTGTGAACAACCACAATGTCACGGTGAAGAATCACAGCCTGTGTG
TGTACCGCGATTCGTCGTCCGGACCGCGACCAGAATCCTACCGAGAGGAT
GTGGAGACCGGCGAGGAGTTCCCCACGATGAGGCCAAGGACTGCATTACA
GTGAACTCAGG

BO10659.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9364-PE 1683 Treh-RE 1..861 17..877 4305 100 Plus
CG9364-PD 1683 Treh-RD 1..861 17..877 4305 100 Plus
CG9364-PA 1683 Treh-RA 1..861 17..877 4305 100 Plus
CG9364-PC 1791 Treh-RC 158..969 66..877 4060 100 Plus
CG9364-PF 1791 Treh-RF 158..969 66..877 4060 100 Plus
CG9364-PB 1548 Treh-RB 1..726 152..877 3630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
Treh-RG 2991 CG9364-RG 484..1378 17..909 4425 99.8 Plus
Treh-RA 2758 CG9364-RA 251..1145 17..909 4425 99.8 Plus
Treh-RD 2992 CG9364-RD 485..1379 17..909 4425 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21085448..21086102 257..909 3175 99.7 Plus
2R 25286936 2R 21085197..21085387 66..256 955 100 Plus
2R 25286936 2R 21077090..21077139 17..66 250 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:38:30 has no hits.

BO10659.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:29 Download gff for BO10659.5prime
Subject Subject Range Query Range Percent Splice Strand
Treh-PE 1..897 17..911 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:10 Download gff for BO10659.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9364-PA 1..897 17..911 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:40:00 Download gff for BO10659.5prime
Subject Subject Range Query Range Percent Splice Strand
Treh-RD 478..1381 8..911 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:18:14 Download gff for BO10659.5prime
Subject Subject Range Query Range Percent Splice Strand
Treh-RD 478..1381 8..911 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:18:14 Download gff for BO10659.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21077083..21077139 8..66 93 -> Plus
2R 21085198..21085387 67..256 100 -> Plus
2R 21085448..21086104 257..911 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:40:00 Download gff for BO10659.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16964588..16964644 8..66 93 -> Plus
arm_2R 16972703..16972892 67..256 100 -> Plus
arm_2R 16972953..16973609 257..911 99   Plus

BO10659.complete Sequence

1714 bp (1714 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631831

> BO10659.complete
GAAGTTATCAGTCGACATGGCCTCTCCAGCGAATCCATCGAGCAATCACA
AAATGAACGGAAATGGTAAAATCTACTGCGAGGGCAATCTGCTGCACACC
ATCCAAACGGCAGTGCCCAAACTATTTGCGGATTCGAAAACGTTTGTGGA
CATGAAGCTGAACAATTCGCCCGACAAGACCCTCGAGGACTTTAATGCCA
TGATGGAGGCCAAGAATCAGACGCCAAGCAGTGAGGATCTCAAGCAGTTT
GTCGATAAGTACTTCAGTGCACCGGGCACCGAGCTTGAGAAATGGACGCC
CACCGACTGGAAGGAGAATCCCAGTTTCCTCGACCTGATCTCCGACCCAG
ATCTGAAGCAATGGGGCGTCGAGCTGAATAGCATTTGGAAGGACTTGGGA
CGCAAAATGAAGGACGAGGTGTCAAAGAATCCCGAATACTACTCAATCAT
TCCCGTGCCAAATCCAGTGATCGTGCCCGGCGGTCGTTTCATTGAGTTCT
ACTACTGGGACTCCTACTGGATCATCCGTGGACTTCTCTACAGCCAGATG
TTTGACACCGCGCGCGGCATGATTGAGAACTTCTTTTCCATTGTCAATCG
GTTCGGTTTTATTCCAAACGGCGGTCGAGTCTACTACCACGGTCGCTCCC
AGCCGCCACTTCTAACCGGTATGGTCAAGTCGTACGTGGACTTCACCAAC
GATGACAAGTTCGCCATCGATGCCCTGGACACGCTGGAGCACGAGTTCGA
GTTCTTTGTGAACAACCACAATGTCACGGTGAAGAATCACAGCCTGTGTG
TGTACCGCGATTCGTCGTCCGGACCGCGACCAGAATCCTACCGAGAGGAT
GTGGAGACCGGCGAGGAGTTCCCCACGGATGAGGCCAAGGAACTGCATTA
CAGTGAACTCAAGGCAGGCGCCGAATCGGGCATGGACTTTAGCTCGCGCT
GGTTCATCTCACCGACTGGAACCAATGATGGCAACCGGAGCGCTCTGAGC
ACCACCTCCATTGTGCCCGTCGACCTGAATGCCTATCTCTACTGGAACGC
CAAGTTGATTGCCGAGTTCCATTCCAAAGCGGGCAACACCAAAAAGGTCA
CCGAATACGAGACCAAGGCCGAGAAACTCCTTCTGGGTATCCAAGAAGTT
TTGTGGAACGAGGAGGCCGGTGTCTGGTTGGACTACGATATGATTAACCA
GAAGCCTCGCGATTACTACACGCCCACCAATCTATCTCCACTGTGGGTGA
AGGCCTTCAACATTTCGGAGTCCGAAAAGATATCGGCTTCGGTTATGGCC
TACATTGAGAGGAACAAGCTGGACAGCTTCCCTGGCGGAGTTCCCAACAC
GCTGAGCTACACCGGAGAACAGTGGGATGCCCCCAATGTGTGGGCACCGA
TGCAGTACATCCTGGTCGAGGGCCTAAACAACCTGAACACTCCCGAGGCC
AAGAATATGTCACTGAAGTGGGCCACCAGGTGGGTGAAGACAAACTTTGC
GGCGTTTAGCAAGGACAGGCACATGTACGAGAAGTACAACGCCGATGAGT
TCGGAGTTGGAGGCGGCGGTGGCGAGTACGAGGTACAGACTGGATTCGGT
TGGTCCAACGGTGTGATCATCGAGTGGCTGAGCAAGCACGGGCGCGACAT
TTCCATTGGATCCGGTTGTGGCTGCCTAGCAGGTGAAAAGCGGCAGGCAA
GCTTTCTAGACCAT

BO10659.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
Treh-RG 1683 CG9364-PG 1..1680 17..1696 8400 100 Plus
Treh-RA 1683 CG9364-PA 1..1680 17..1696 8400 100 Plus
Treh-RD 1683 CG9364-PD 1..1680 17..1696 8400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
Treh-RG 2991 CG9364-RG 484..2163 17..1696 8400 100 Plus
Treh-RA 2758 CG9364-RA 251..1930 17..1696 8400 100 Plus
Treh-RD 2992 CG9364-RD 485..2164 17..1696 8400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21085448..21086725 257..1534 6390 100 Plus
2R 25286936 2R 21085197..21085387 66..256 955 100 Plus
2R 25286936 2R 21086788..21086951 1533..1696 820 100 Plus
2R 25286936 2R 21077090..21077139 17..66 250 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:13:20 has no hits.

BO10659.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:20 Download gff for BO10659.complete
Subject Subject Range Query Range Percent Splice Strand
Treh-RA 1..1683 17..1697 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:40 Download gff for BO10659.complete
Subject Subject Range Query Range Percent Splice Strand
Treh-RA 489..2175 8..1696 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:15 Download gff for BO10659.complete
Subject Subject Range Query Range Percent Splice Strand
Treh-RD 485..2164 17..1698 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:20 Download gff for BO10659.complete
Subject Subject Range Query Range Percent Splice Strand
Treh-RA 489..2175 8..1696 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:10 Download gff for BO10659.complete
Subject Subject Range Query Range Percent Splice Strand
Treh-RD 485..2164 17..1698 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:10 Download gff for BO10659.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21077090..21077139 17..66 100 -> Plus
2R 21085198..21085387 67..256 100 -> Plus
2R 21085448..21086725 257..1534 100 -> Plus
2R 21086790..21086951 1535..1698 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:15 Download gff for BO10659.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16974295..16974456 1535..1698 98   Plus
arm_2R 16964595..16964644 17..66 100 -> Plus
arm_2R 16972703..16972892 67..256 100 -> Plus
arm_2R 16972953..16974230 257..1534 100 -> Plus

BO10659.pep Sequence

Translation from 16 to 1714

> BO10659.pep
MASPANPSSNHKMNGNGKIYCEGNLLHTIQTAVPKLFADSKTFVDMKLNN
SPDKTLEDFNAMMEAKNQTPSSEDLKQFVDKYFSAPGTELEKWTPTDWKE
NPSFLDLISDPDLKQWGVELNSIWKDLGRKMKDEVSKNPEYYSIIPVPNP
VIVPGGRFIEFYYWDSYWIIRGLLYSQMFDTARGMIENFFSIVNRFGFIP
NGGRVYYHGRSQPPLLTGMVKSYVDFTNDDKFAIDALDTLEHEFEFFVNN
HNVTVKNHSLCVYRDSSSGPRPESYREDVETGEEFPTDEAKELHYSELKA
GAESGMDFSSRWFISPTGTNDGNRSALSTTSIVPVDLNAYLYWNAKLIAE
FHSKAGNTKKVTEYETKAEKLLLGIQEVLWNEEAGVWLDYDMINQKPRDY
YTPTNLSPLWVKAFNISESEKISASVMAYIERNKLDSFPGGVPNTLSYTG
EQWDAPNVWAPMQYILVEGLNNLNTPEAKNMSLKWATRWVKTNFAAFSKD
RHMYEKYNADEFGVGGGGGEYEVQTGFGWSNGVIIEWLSKHGRDISIGSG
CGCLAGEKRQASFLDH

BO10659.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
Treh-PG 560 CG9364-PG 1..560 1..560 3029 100 Plus
Treh-PA 560 CG9364-PA 1..560 1..560 3029 100 Plus
Treh-PD 560 CG9364-PD 1..560 1..560 3029 100 Plus
Treh-PE 560 CG9364-PE 1..560 1..560 3029 100 Plus
Treh-PF 596 CG9364-PF 54..596 18..560 2936 100 Plus