Clone Sequence Records
BO10659.3prime Sequence
891 bp (872 high quality bases) assembled on 2006-04-19
> BO10659.3prime
ATGGTCTAGAAAGCTTGCCTGCCGCTTTTCACCTGCTAGGCAGCCACAAC
CGGATCCAATGGAAATGTCGCGCCCGTGCTTGCTCAGCCACTCGATGATC
ACACCGTTGGACCAACCGAATCCAGTCTGTACCTCGTACTCGCCACCGCC
GCCTCCAACTCCGAACTCATCGGCGTTGTACTTCTCGTACATGTGCCTGT
CCTTGCTAAACGCCGCAAAGTTTGTCTTCACCCACCTGGTGGCCCACTTC
AGTGACATATTCTTGGCCTCGGGAGTGTTCAGGTTGTTTAGGCCCTCGAC
CAGGATGTACTGCATCGGTGCCCACACATTGGGGGCATCCCACTGTTCTC
CGGTGTAGCTCAGCGTGTTGGGAACTCCGCCAGGGAAGCTGTCCAGCTTG
TTCCTCTCAATGTAGGCCATAACCGAAGCCGATATCTTTTCGGACTCCGA
AATGTTGAAGGCCTTCACCCACAGTGGAGATAGATTGGTGGGCGTGTAGT
AATCGCGAGGCTTCTGGTTAATCATATCGTAGTCCAACCAGACACCGGCC
TCCTCGTTCCACAAAACTTCTTGGATACCCAGAAGGAGTTTCTCGGCCTT
GGTCTCGTATTCGGTGACCTTTTTGGTGTTGCCCGCTTTGGAATGGAACT
CGGCAATCAACTTGGCGTTCCAGTAGAGATAGGCATTCAGGTCGACGGGC
ACAATGGAGGTGGTGCTCAGAGCGCTCCGGTTGCCATCATTGGTTCCAGT
CGGTGAGATGAACCAGCGCGAGCTAAAGTCCATGCCCGATTCGGCGCCTG
CCTTGAGTTCACTGTAATGCAGTTCCTTGGCCTCATCCGTGGGGAACTCC
CTCGCGGTCTCACATCCTCTCGGTAGGATTCTGGTCGCGGT
BO10659.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9364-PE | 1683 | Treh-RE | 849..1680 | 850..19 | 4160 | 100 | Minus |
CG9364-PD | 1683 | Treh-RD | 849..1680 | 850..19 | 4160 | 100 | Minus |
CG9364-PA | 1683 | Treh-RA | 849..1680 | 850..19 | 4160 | 100 | Minus |
CG9364-PB | 1548 | Treh-RB | 714..1545 | 850..19 | 4160 | 100 | Minus |
CG9364-PC | 1791 | Treh-RC | 957..1788 | 850..19 | 4160 | 100 | Minus |
CG9364-PF | 1791 | Treh-RF | 957..1788 | 850..19 | 4160 | 100 | Minus |
CG9364-PE | 1683 | Treh-RE | 807..837 | 891..861 | 155 | 100 | Minus |
CG9364-PD | 1683 | Treh-RD | 807..837 | 891..861 | 155 | 100 | Minus |
CG9364-PA | 1683 | Treh-RA | 807..837 | 891..861 | 155 | 100 | Minus |
CG9364-PB | 1548 | Treh-RB | 672..702 | 891..861 | 155 | 100 | Minus |
CG9364-PC | 1791 | Treh-RC | 915..945 | 891..861 | 155 | 100 | Minus |
CG9364-PF | 1791 | Treh-RF | 915..945 | 891..861 | 155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:29:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Treh-RG | 2991 | CG9364-RG | 1290..2163 | 891..19 | 4300 | 99.7 | Minus |
Treh-RF | 2822 | CG9364-RF | 1121..1994 | 891..19 | 4300 | 99.7 | Minus |
Treh-RC | 2928 | CG9364-RC | 1227..2100 | 891..19 | 4300 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:29:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21086014..21086725 | 891..181 | 3450 | 99.3 | Minus |
2R | 25286936 | 2R | 21086788..21086951 | 182..19 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 16:29:10 has no hits.
BO10659.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:28 Download gff for
BO10659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Treh-PA | 807..1683 | 18..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:08 Download gff for
BO10659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9364-PC | 915..1791 | 18..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:27:17 Download gff for
BO10659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Treh-RC | 1227..2100 | 19..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:54:36 Download gff for
BO10659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Treh-RC | 1227..2100 | 19..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:54:36 Download gff for
BO10659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21086014..21086725 | 181..891 | 99 | -> | Minus |
2R | 21086790..21086951 | 19..180 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:27:17 Download gff for
BO10659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16973519..16974230 | 181..891 | 99 | -> | Minus |
arm_2R | 16974295..16974456 | 19..180 | 100 | | Minus |
BO10659.5prime Sequence
911 bp (830 high quality bases) assembled on 2006-04-19
> BO10659.5prime
GAAGTTATCAGTCGACATGGCCTCTCCAGCGAATCCATCGAGCAATCACA
AAATGAACGGAAATGGTAAAATCTACTGCGAGGGCAATCTGCTGCACACC
ATCCAAACGGCAGTGCCCAAACTATTTGCGGATTCGAAAACGTTTGTGGA
CATGAAGCTGAACAATTCGCCCGACAAGACCCTCGAGGACTTTAATGCCA
TGATGGAGGCCAAGAATCAGACGCCAAGCAGTGAGGATCTCAAGCAGTTT
GTCGATAAGTACTTCAGTGCACCGGGCACCGAGCTTGAGAAATGGACGCC
CACCGACTGGAAGGAGAATCCCAGTTTCCTCGACCTGATCTCCGACCCAG
ATCTGAAGCAATGGGGCGTCGAGCTGAATAGCATTTGGAAGGACTTGGGA
CGCAAAATGAAGGACGAGGTGTCAAAGAATCCCGAATACTACTCAATCAT
TCCCGTGCCAAATCCAGTGATCGTGCCCGGCGGTCGTTTCATTGAGTTCT
ACTACTGGGACTCCTACTGGATCATCCGTGGACTTCTCTACAGCCAGATG
TTTGACACCGCGCGCGGCATGATTGAGAACTTCTTTTCCATTGTCAATCG
GTTCGGTTTTATTCCAAACGGCGGTCGAGTCTACTACCACGGTCGCTCCC
AGCCGCCACTTCTAACCGGTATGGTCAAGTCGTACGTGGACTTCACCAAC
GATGACAAGTTCGCCATCGATGCCCTGGACACGCTGGAGCACGAGTTCGA
GTTCTTTGTGAACAACCACAATGTCACGGTGAAGAATCACAGCCTGTGTG
TGTACCGCGATTCGTCGTCCGGACCGCGACCAGAATCCTACCGAGAGGAT
GTGGAGACCGGCGAGGAGTTCCCCACGATGAGGCCAAGGACTGCATTACA
GTGAACTCAGG
BO10659.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9364-PE | 1683 | Treh-RE | 1..861 | 17..877 | 4305 | 100 | Plus |
CG9364-PD | 1683 | Treh-RD | 1..861 | 17..877 | 4305 | 100 | Plus |
CG9364-PA | 1683 | Treh-RA | 1..861 | 17..877 | 4305 | 100 | Plus |
CG9364-PC | 1791 | Treh-RC | 158..969 | 66..877 | 4060 | 100 | Plus |
CG9364-PF | 1791 | Treh-RF | 158..969 | 66..877 | 4060 | 100 | Plus |
CG9364-PB | 1548 | Treh-RB | 1..726 | 152..877 | 3630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:38:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Treh-RG | 2991 | CG9364-RG | 484..1378 | 17..909 | 4425 | 99.8 | Plus |
Treh-RA | 2758 | CG9364-RA | 251..1145 | 17..909 | 4425 | 99.8 | Plus |
Treh-RD | 2992 | CG9364-RD | 485..1379 | 17..909 | 4425 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:38:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21085448..21086102 | 257..909 | 3175 | 99.7 | Plus |
2R | 25286936 | 2R | 21085197..21085387 | 66..256 | 955 | 100 | Plus |
2R | 25286936 | 2R | 21077090..21077139 | 17..66 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:38:30 has no hits.
BO10659.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:29 Download gff for
BO10659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Treh-PE | 1..897 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:10 Download gff for
BO10659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9364-PA | 1..897 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:40:00 Download gff for
BO10659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Treh-RD | 478..1381 | 8..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:18:14 Download gff for
BO10659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Treh-RD | 478..1381 | 8..911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:18:14 Download gff for
BO10659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21077083..21077139 | 8..66 | 93 | -> | Plus |
2R | 21085198..21085387 | 67..256 | 100 | -> | Plus |
2R | 21085448..21086104 | 257..911 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:40:00 Download gff for
BO10659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16964588..16964644 | 8..66 | 93 | -> | Plus |
arm_2R | 16972703..16972892 | 67..256 | 100 | -> | Plus |
arm_2R | 16972953..16973609 | 257..911 | 99 | | Plus |
BO10659.complete Sequence
1714 bp (1714 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631831
> BO10659.complete
GAAGTTATCAGTCGACATGGCCTCTCCAGCGAATCCATCGAGCAATCACA
AAATGAACGGAAATGGTAAAATCTACTGCGAGGGCAATCTGCTGCACACC
ATCCAAACGGCAGTGCCCAAACTATTTGCGGATTCGAAAACGTTTGTGGA
CATGAAGCTGAACAATTCGCCCGACAAGACCCTCGAGGACTTTAATGCCA
TGATGGAGGCCAAGAATCAGACGCCAAGCAGTGAGGATCTCAAGCAGTTT
GTCGATAAGTACTTCAGTGCACCGGGCACCGAGCTTGAGAAATGGACGCC
CACCGACTGGAAGGAGAATCCCAGTTTCCTCGACCTGATCTCCGACCCAG
ATCTGAAGCAATGGGGCGTCGAGCTGAATAGCATTTGGAAGGACTTGGGA
CGCAAAATGAAGGACGAGGTGTCAAAGAATCCCGAATACTACTCAATCAT
TCCCGTGCCAAATCCAGTGATCGTGCCCGGCGGTCGTTTCATTGAGTTCT
ACTACTGGGACTCCTACTGGATCATCCGTGGACTTCTCTACAGCCAGATG
TTTGACACCGCGCGCGGCATGATTGAGAACTTCTTTTCCATTGTCAATCG
GTTCGGTTTTATTCCAAACGGCGGTCGAGTCTACTACCACGGTCGCTCCC
AGCCGCCACTTCTAACCGGTATGGTCAAGTCGTACGTGGACTTCACCAAC
GATGACAAGTTCGCCATCGATGCCCTGGACACGCTGGAGCACGAGTTCGA
GTTCTTTGTGAACAACCACAATGTCACGGTGAAGAATCACAGCCTGTGTG
TGTACCGCGATTCGTCGTCCGGACCGCGACCAGAATCCTACCGAGAGGAT
GTGGAGACCGGCGAGGAGTTCCCCACGGATGAGGCCAAGGAACTGCATTA
CAGTGAACTCAAGGCAGGCGCCGAATCGGGCATGGACTTTAGCTCGCGCT
GGTTCATCTCACCGACTGGAACCAATGATGGCAACCGGAGCGCTCTGAGC
ACCACCTCCATTGTGCCCGTCGACCTGAATGCCTATCTCTACTGGAACGC
CAAGTTGATTGCCGAGTTCCATTCCAAAGCGGGCAACACCAAAAAGGTCA
CCGAATACGAGACCAAGGCCGAGAAACTCCTTCTGGGTATCCAAGAAGTT
TTGTGGAACGAGGAGGCCGGTGTCTGGTTGGACTACGATATGATTAACCA
GAAGCCTCGCGATTACTACACGCCCACCAATCTATCTCCACTGTGGGTGA
AGGCCTTCAACATTTCGGAGTCCGAAAAGATATCGGCTTCGGTTATGGCC
TACATTGAGAGGAACAAGCTGGACAGCTTCCCTGGCGGAGTTCCCAACAC
GCTGAGCTACACCGGAGAACAGTGGGATGCCCCCAATGTGTGGGCACCGA
TGCAGTACATCCTGGTCGAGGGCCTAAACAACCTGAACACTCCCGAGGCC
AAGAATATGTCACTGAAGTGGGCCACCAGGTGGGTGAAGACAAACTTTGC
GGCGTTTAGCAAGGACAGGCACATGTACGAGAAGTACAACGCCGATGAGT
TCGGAGTTGGAGGCGGCGGTGGCGAGTACGAGGTACAGACTGGATTCGGT
TGGTCCAACGGTGTGATCATCGAGTGGCTGAGCAAGCACGGGCGCGACAT
TTCCATTGGATCCGGTTGTGGCTGCCTAGCAGGTGAAAAGCGGCAGGCAA
GCTTTCTAGACCAT
BO10659.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Treh-RG | 1683 | CG9364-PG | 1..1680 | 17..1696 | 8400 | 100 | Plus |
Treh-RA | 1683 | CG9364-PA | 1..1680 | 17..1696 | 8400 | 100 | Plus |
Treh-RD | 1683 | CG9364-PD | 1..1680 | 17..1696 | 8400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:13:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Treh-RG | 2991 | CG9364-RG | 484..2163 | 17..1696 | 8400 | 100 | Plus |
Treh-RA | 2758 | CG9364-RA | 251..1930 | 17..1696 | 8400 | 100 | Plus |
Treh-RD | 2992 | CG9364-RD | 485..2164 | 17..1696 | 8400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:13:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21085448..21086725 | 257..1534 | 6390 | 100 | Plus |
2R | 25286936 | 2R | 21085197..21085387 | 66..256 | 955 | 100 | Plus |
2R | 25286936 | 2R | 21086788..21086951 | 1533..1696 | 820 | 100 | Plus |
2R | 25286936 | 2R | 21077090..21077139 | 17..66 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:13:20 has no hits.
BO10659.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:20 Download gff for
BO10659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Treh-RA | 1..1683 | 17..1697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:40 Download gff for
BO10659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Treh-RA | 489..2175 | 8..1696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:15 Download gff for
BO10659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Treh-RD | 485..2164 | 17..1698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:20 Download gff for
BO10659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Treh-RA | 489..2175 | 8..1696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:10 Download gff for
BO10659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Treh-RD | 485..2164 | 17..1698 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:10 Download gff for
BO10659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21077090..21077139 | 17..66 | 100 | -> | Plus |
2R | 21085198..21085387 | 67..256 | 100 | -> | Plus |
2R | 21085448..21086725 | 257..1534 | 100 | -> | Plus |
2R | 21086790..21086951 | 1535..1698 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:15 Download gff for
BO10659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16974295..16974456 | 1535..1698 | 98 | | Plus |
arm_2R | 16964595..16964644 | 17..66 | 100 | -> | Plus |
arm_2R | 16972703..16972892 | 67..256 | 100 | -> | Plus |
arm_2R | 16972953..16974230 | 257..1534 | 100 | -> | Plus |
BO10659.pep Sequence
Translation from 16 to 1714
> BO10659.pep
MASPANPSSNHKMNGNGKIYCEGNLLHTIQTAVPKLFADSKTFVDMKLNN
SPDKTLEDFNAMMEAKNQTPSSEDLKQFVDKYFSAPGTELEKWTPTDWKE
NPSFLDLISDPDLKQWGVELNSIWKDLGRKMKDEVSKNPEYYSIIPVPNP
VIVPGGRFIEFYYWDSYWIIRGLLYSQMFDTARGMIENFFSIVNRFGFIP
NGGRVYYHGRSQPPLLTGMVKSYVDFTNDDKFAIDALDTLEHEFEFFVNN
HNVTVKNHSLCVYRDSSSGPRPESYREDVETGEEFPTDEAKELHYSELKA
GAESGMDFSSRWFISPTGTNDGNRSALSTTSIVPVDLNAYLYWNAKLIAE
FHSKAGNTKKVTEYETKAEKLLLGIQEVLWNEEAGVWLDYDMINQKPRDY
YTPTNLSPLWVKAFNISESEKISASVMAYIERNKLDSFPGGVPNTLSYTG
EQWDAPNVWAPMQYILVEGLNNLNTPEAKNMSLKWATRWVKTNFAAFSKD
RHMYEKYNADEFGVGGGGGEYEVQTGFGWSNGVIIEWLSKHGRDISIGSG
CGCLAGEKRQASFLDH
BO10659.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Treh-PG | 560 | CG9364-PG | 1..560 | 1..560 | 3029 | 100 | Plus |
Treh-PA | 560 | CG9364-PA | 1..560 | 1..560 | 3029 | 100 | Plus |
Treh-PD | 560 | CG9364-PD | 1..560 | 1..560 | 3029 | 100 | Plus |
Treh-PE | 560 | CG9364-PE | 1..560 | 1..560 | 3029 | 100 | Plus |
Treh-PF | 596 | CG9364-PF | 54..596 | 18..560 | 2936 | 100 | Plus |