Clone BO10662 Report

Search the DGRC for BO10662

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:106
Well:62
Vector:pDNR-Dual
Associated Gene/Transcriptmew-RA
Protein status:BO10662.pep: validated not full length
Sequenced Size:3181

Clone Sequence Records

BO10662.3prime Sequence

916 bp (819 high quality bases) assembled on 2006-04-19

> BO10662.3prime
ATGGTCTAGAAAGCTTGCGAAAACGTGATGCGTATTCTTTGATGGCGCCA
GGAAGGGCTTCTCCTCGTTCATTTTCTCCAGATTGCCGCTTAACGTCGGA
TCGGTGGGTCGGATGCGCTTAAAGAAGCCTACCTTCCACAGCACATAGGT
GACCAGCGCAAGGAGGAGCAGGCCACCAACGATGCCCAGGATGATAATCA
GCCACGGTATCGATGTGTCGCGCTGTTGGTTCCTTAACTCCGGATAGGCC
CGCGTCTCCACCTCTATGTTATTGTGATCCATCACCTCGACGCCATAGCT
CTCGGGTATTTGAGCCGTGGCTGTCGAGAAAATCCTGACCCTTTCCACCC
GAGGATACTCACTGACCAGCGTCGAGTTCCACAGGCGCGCCTTGACCACC
ACCTGGGCCTCGGACAAAGCGGGCATGTTTAGGATGTCACACTCGATGCG
CACGCAGTTGGTCGCGCCCTTATTGCAGTCCAGCTCGACGATGTCCTGCT
TCTTGCCATTCGCCGCATTGCTACTCTCGGGATCGTACATTAACCTCTCC
AGGCGCGTCACCCGTTCTAGGAAACTGCGACGGACACGATTGCGGTTCGA
TTGAGTGTCATCCGAATGATCATCCCGGTGGCTGCTGGAGTAGTAGCTTC
TCTGCGAGTGGATCAAGCTCTTGTTGAACGAATGACGCGACTGCGAGGGG
AACATTCTCATCTGGGCGGGAGCACTCAAGTAGGCTGGATTTTCCCTAGA
ACCGCTGGCCAAATTCAGCGGATTGACATATTCTTTGGCCACATGGCATT
CGCCCTGGCTAACTTCCACAGTGGGTACTTGCTCCAGATAGAGTAGATAC
TGAACCGGTCGACCGCTCTGTGGATCACTGTACAGTGAGTATGGCCAATG
GATGACCATTTGTACC

BO10662.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1771-PA 3150 mew-RA 2250..3147 916..19 4490 100 Minus
CG1771-PB 3441 mew-RB 2541..3438 916..19 4490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
mew-RD 4350 CG1771-RD 2989..3886 916..19 4490 100 Minus
mew-RC 4281 CG1771-RC 2920..3817 916..19 4490 100 Minus
mew-RE 3863 CG1771-RE 2502..3399 916..19 4490 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13215916..13216573 259..916 3290 100 Plus
X 23542271 X 13215620..13215864 19..263 1225 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:57:57 has no hits.

BO10662.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:32 Download gff for BO10662.3prime
Subject Subject Range Query Range Percent Splice Strand
mew-PA 2250..3150 15..916 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:14 Download gff for BO10662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1771-PB 2541..3441 15..916 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:54:09 Download gff for BO10662.3prime
Subject Subject Range Query Range Percent Splice Strand
mew-RE 2502..3402 15..916 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:29 Download gff for BO10662.3prime
Subject Subject Range Query Range Percent Splice Strand
mew-RE 2502..3402 15..916 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:29 Download gff for BO10662.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13215617..13215862 15..261 99 <- Plus
X 13215919..13216573 262..916 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:54:09 Download gff for BO10662.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13109650..13109895 15..261 99 <- Plus
arm_X 13109952..13110606 262..916 100   Plus

BO10662.5prime Sequence

871 bp (854 high quality bases) assembled on 2006-04-19

> BO10662.5prime
GAAGTTATCAGTCGACATGACACAGCGTTTCGATGACTGCGAACAAGTGA
TCACCGATGGCAGGCGAAACTTCGACAGCGAAATCCTTTCACCGCCCGGC
AATGACGAAATCAAGGAGGATCAATGGATGGGCGTTACGGTGCGTTCGAA
TCCCCTACAGGCCAACGGATCCGGCGGAAAGGTAATCGTCTGCGCCCATC
GCTATATGTACATCGTCCGAGAGAATCGTTATGGACAGGGTCTCTGCTAT
CTCCTAACGAACGATCTGCAATTCGAAGAGGTCCACGAGCCCTGCAAAGG
ACGACCTGTGCAAAGGCAACACGAAGATTATGGACTGTGCCAGGCGGGCA
CATCGGCTGCCCTACTGGACGATGACACCATGGTGTTGGGTTCCCCTGGA
CCGTACACATGGCGCGGATCCATTTGGGTGACTCAGGTGGGCGGGGAGTA
CCTGCAGCGCGACAAGACGACCTACTACAGTGATCATTCGGACTTGAATT
CGCCGGTGGACAAGTACAGCTATCTTGGTATGTCGGTGACCGGTGGCAGA
TTCTTTGGTCACATGTCATATGCGGCTGGAGCTCCACGATCCGAGGGTCA
TGGACAGGTGGTGATTTTCGACAAGTCCACCGATAATCCAATACCGGTGC
ACTCGATCCTGGATGGTGAGCAATTCGGTTCGAGTTTTGGCTATGAACTG
GCAACCGCCGATATAAACGGAGATCACAGGCCGGATTTAATAGTGGCAGC
TCCTTTGTACTTCACAAAAACGGAAGGTGGAGCTGTGTATGTGTACCAGA
ATATCCAGGATACGTTGCCCATGAAGTACACACTCAAGTTGACGGGACCT
CTGGAGAGTCGTTTCGGTCTG

BO10662.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1771-PA 3150 mew-RA 1..855 17..871 4275 100 Plus
CG1771-PB 3441 mew-RB 292..1146 17..871 4275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:15:55
Subject Length Description Subject Range Query Range Score Percent Strand
mew-RE 3863 CG1771-RE 253..1107 17..871 4275 100 Plus
mew-RF 4254 CG1771-RF 644..1498 17..871 4275 100 Plus
mew-RB 5001 CG1771-RB 644..1498 17..871 4275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13218109..13218666 871..314 2790 100 Minus
X 23542271 X 13219747..13219883 316..180 685 100 Minus
X 23542271 X 13220030..13220146 185..69 585 100 Minus
X 23542271 X 13224984..13225035 68..17 260 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:15:52 has no hits.

BO10662.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:33 Download gff for BO10662.5prime
Subject Subject Range Query Range Percent Splice Strand
mew-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:15 Download gff for BO10662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1771-PB 287..1146 11..871 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:42:07 Download gff for BO10662.5prime
Subject Subject Range Query Range Percent Splice Strand
mew-RB 639..1498 11..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:50:58 Download gff for BO10662.5prime
Subject Subject Range Query Range Percent Splice Strand
mew-RB 639..1498 11..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:50:58 Download gff for BO10662.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13218109..13218664 316..871 100 <- Minus
X 13219748..13219881 182..315 100 <- Minus
X 13220034..13220146 69..181 100 <- Minus
X 13224984..13225040 11..68 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:42:07 Download gff for BO10662.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13112142..13112697 316..871 100 <- Minus
arm_X 13113781..13113914 182..315 100 <- Minus
arm_X 13114067..13114179 69..181 100 <- Minus
arm_X 13119017..13119073 11..68 96   Minus

BO10662.complete Sequence

3181 bp (3181 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631832

> BO10662.complete
GAAGTTATCAGTCGACATGACACAGCGTTTCGATGACTGCGAACAAGTGA
TCACCGATGGCAGGCGAAACTTCGACAGCGAAATCCTTTCACCGCCCGGC
AATGACGAAATCAAGGAGGATCAATGGATGGGCGTTACGGTGCGTTCGAA
TCCCCTACAGGCCAACGGATCCGGCGGAAAGGTAATCGTCTGCGCCCATC
GCTATATGTACATCGTCCGAGAGAATCGTTATGGACAGGGTCTCTGCTAT
CTCCTAACGAACGATCTGCAATTCGAAGAGGTCCACGAGCCCTGCAAAGG
ACGACCTGTGCAAAGGCAACACGAAGATTATGGACTGTGCCAGGCGGGCA
CATCGGCTGCCCTACTGGACGATGACACCATGGTGTTGGGTTCCCCTGGA
CCGTACACATGGCGCGGATCCATTTGGGTGACTCAGGTGGGCGGGGAGTA
CCTGCAGCGCGACAAGACGACCTACTACAGTGATCATTCGGACTTGAATT
CGCCGGTGGACAAGTACAGCTATCTTGGTATGTCGGTGACCGGTGGCAGA
TTCTTTGGTCACATGTCATATGCGGCTGGAGCTCCACGATCCGAGGGTCA
TGGACAGGTGGTGATTTTCGACAAGTCCACCGATAATCCAATACCGGTGC
ACTCGATCCTGGATGGTGAGCAATTCGGTTCGAGTTTTGGCTATGAACTG
GCAACCGCCGATATAAACGGAGATCACAGGCCGGATTTAATAGTGGCAGC
TCCTTTGTACTTCACAAAAACGGAAGGTGGAGCTGTGTATGTGTACCAGA
ATATCCAGGATACGTTGCCCATGAAGTACACACTCAAGTTGACGGGACCT
CTGGAGAGTCGTTTCGGTCTGGCGTTGGCCAATATCGGAGATCTGAACAA
GGATAACTGCGAGGATCTGGCCGTGGGAGCACCATACGAGGGCAACGGCG
TAGTCTACATCTACTTGGGCTCGAGTCAGGGCCTGAATTCCAAGCCCGCC
CAGAAGATCCAGGCCTCGGAACTGGGTGGAACCATACCCAATGGTCAACC
GATTCGTACCTTTGGCATCTCTATATCCGGCAACACGGACTTGGATGATA
ACTCCTATCCGGATGTGGTAATCGGAGCATTCAACTCCTCGGCAGCCGTA
ATCCTGCTGGCCAGACCTATCATCAGCATTCAGACGAGTGTACAGCGCAA
GGAGCTGCATAACATGGATCCCAATACGCCCGGCTGTTTGGACGATCCGG
CCAGTAATCTAACATGTTTCACGTTCAGAGCATGTTGCAGCATTGAACCG
TACGATGAGAAGAACAAGGAACTCCGGTTGGCTTATAGCGTCGAAGCGGA
AACCTTCGATCACCTAAAGAAATTCTCTCGCGTCTTCTTCTTCGATCGGG
AAAATAAGCGGACGAATGTGCTCAGTCGCGTGGTGAGAGTGCATACGAAT
GGAAGGACAGAATGCCAGGCAGTCACGGGCTACATCAAGGCCAATACCCG
GGATATCCAGACTCCCGTGCGTTTCCGCTTGAAGTACTCGCTGGTGGAAC
CCCCATTGGCGGATTCTGCTTTGGTACGCCTCAATCCGATATTGGATCAG
ACCCAGGCGCATGTCGATTTCGAGGGCACCTTCCAGAAAGACTGTGGCGA
TGACGATCTCTGTGAGAGCAATCTGATTATCCGGGTGGAGCCGAACATCA
CTGAGTCCTCAGGCAACGAATACACACTGATTCTGGATGAAACGGAACTG
GAGGTCCGCATCAATGTTAGCAATCTGGCGGATTCTGCTTACGAAGCTCA
ACTATTCATCGCCCATCAGGCGGGTGTTTCATATGTGGCAACCAAGAAGC
CGACGAATGCCACGTGCAATAGCTACAATACCACCCTGGTTGCCTGCAGT
CTTGGTAATCCCATGCTGCGCGACACCACCACATTTGTGACCATCCGATT
CCAGCCCAAAGGATTGGAGCCAAGTGAGAAGATCATGCTATTCCACATAT
TCGCAAATACCACCTCCAAGCTGGTGGGACCCGAACGTCCCGAGCGGGAT
CTTCGCGTGAATGTGGTGCGTCGGGCGAAGCTCAACTTCCGAGGTTGGGC
CATACCCGAGCAGAGTTTCTACAGTGGATCGAGTGTGGCTAATTCGGTTG
CAAATACTGCCGCCACCGATATAGAAGGACATGGTCCGATGGGTATGGAC
GATGTGGGCTCCCAAGTTCATCACATGTTCACCATTTTCAATGAGGGACC
ATCCACGGCGCCGAAGGTACAAATGGTCATCCATTGGCCATACTCACTGT
ACAGTGATCCACAGAGCGGTCGACCGGTTCAGTATCTACTCTATCTGGAG
CAAGTACCCACTGTGGAAGTTAGCCAGGGCGAATGCCATGTGGCCAAAGA
ATATGTCAATCCGCTGAATTTGGCCAGCGGTTCTAGGGAAAATCCAGCCT
ACTTGAGTGCTCCCGCCCAGATGAGAATGTTCCCCTCGCAGTCGCGTCAT
TCGTTCAACAAGAGCTTGATCCACTCGCAGAGAAGCTACTACTCCAGCAG
CCACCGGGATGATCATTCGGATGACACTCAATCGAACCGCAATCGTGTCC
GTCGCAGTTTCCTAGAACGGGTGACGCGCCTGGAGAGGTTAATGTACGAT
CCCGAGAGTAGCAATGCGGCGAATGGCAAGAAGCAGGACATCGTCGAGCT
GGACTGCAATAAGGGCGCGACCAACTGCGTGCGCATCGAGTGTGACATCC
TAAACATGCCCGCTTTGTCCGAGGCCCAGGTGGTGGTCAAGGCGCGCCTG
TGGAACTCGACGCTGGTCAGTGAGTATCCTCGGGTGGAAAGGGTCAGGAT
TTTCTCGACAGCCACGGCTCAAATACCCGAGAGCTATGGCGTCGAGGTGA
TGGATCACAATAACATAGAGGTGGAGACGCGGGCCTATCCGGAGTTAAGG
AACCAACAGCGCGACACATCGATACCGTGGCTGATTATCATCCTGGGCAT
CGTTGGTGGCCTGCTCCTCCTTGCGCTGGTCACCTATGTGCTGTGGAAGG
TAGGCTTCTTTAAGCGCATCCGACCCACCGATCCGACGTTAAGCGGCAAT
CTGGAGAAAATGAACGAGGAGAAGCCCTTCCTGGCGCCATCAAAGAATAC
GCATCACGTTTTCGCAAGCTTTCTAGACCAT

BO10662.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
mew-RE 3441 CG1771-PE 1..3147 17..3163 15735 100 Plus
mew-RF 3732 CG1771-PF 292..3438 17..3163 15735 100 Plus
mew-RB 3441 CG1771-PB 292..3438 17..3163 15735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
mew-RE 3863 CG1771-RE 253..3399 17..3163 15735 100 Plus
mew-RF 4254 CG1771-RF 644..3790 17..3163 15735 100 Plus
mew-RB 5001 CG1771-RB 644..3790 17..3163 15735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:05:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13217267..13218666 1713..314 7000 100 Minus
X 23542271 X 13215916..13216987 2923..1852 5360 100 Minus
X 23542271 X 13215620..13215864 3163..2919 1225 100 Minus
X 23542271 X 13217061..13217202 1852..1711 710 100 Minus
X 23542271 X 13219747..13219883 316..180 685 100 Minus
X 23542271 X 13220030..13220146 185..69 585 100 Minus
X 23542271 X 13224984..13225035 68..17 260 100 Minus
Blast to na_te.dros performed on 2014-11-27 17:05:50 has no hits.

BO10662.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:21 Download gff for BO10662.complete
Subject Subject Range Query Range Percent Splice Strand
mew-RB 287..3441 11..3167 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:42 Download gff for BO10662.complete
Subject Subject Range Query Range Percent Splice Strand
mew-RB 627..3781 11..3167 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:04 Download gff for BO10662.complete
Subject Subject Range Query Range Percent Splice Strand
mew-RB 644..3790 17..3165 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:21 Download gff for BO10662.complete
Subject Subject Range Query Range Percent Splice Strand
mew-RB 627..3781 11..3167 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:37 Download gff for BO10662.complete
Subject Subject Range Query Range Percent Splice Strand
mew-RB 644..3790 17..3165 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:37 Download gff for BO10662.complete
Subject Subject Range Query Range Percent Splice Strand
X 13215618..13215862 2921..3165 99 <- Minus
X 13215919..13216986 1853..2920 100 <- Minus
X 13217061..13217200 1713..1852 100 <- Minus
X 13217268..13218664 316..1712 100 <- Minus
X 13219748..13219881 182..315 100 <- Minus
X 13220034..13220146 69..181 100 <- Minus
X 13224984..13225035 17..68 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:04 Download gff for BO10662.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13111301..13112697 316..1712 100 <- Minus
arm_X 13113781..13113914 182..315 100 <- Minus
arm_X 13109651..13109895 2921..3165 99 <- Minus
arm_X 13109952..13111019 1853..2920 100 <- Minus
arm_X 13111094..13111233 1713..1852 100 <- Minus
arm_X 13114067..13114179 69..181 100 <- Minus
arm_X 13119017..13119068 17..68 100   Minus

BO10662.pep Sequence

Translation from 16 to 3181

> BO10662.pep
MTQRFDDCEQVITDGRRNFDSEILSPPGNDEIKEDQWMGVTVRSNPLQAN
GSGGKVIVCAHRYMYIVRENRYGQGLCYLLTNDLQFEEVHEPCKGRPVQR
QHEDYGLCQAGTSAALLDDDTMVLGSPGPYTWRGSIWVTQVGGEYLQRDK
TTYYSDHSDLNSPVDKYSYLGMSVTGGRFFGHMSYAAGAPRSEGHGQVVI
FDKSTDNPIPVHSILDGEQFGSSFGYELATADINGDHRPDLIVAAPLYFT
KTEGGAVYVYQNIQDTLPMKYTLKLTGPLESRFGLALANIGDLNKDNCED
LAVGAPYEGNGVVYIYLGSSQGLNSKPAQKIQASELGGTIPNGQPIRTFG
ISISGNTDLDDNSYPDVVIGAFNSSAAVILLARPIISIQTSVQRKELHNM
DPNTPGCLDDPASNLTCFTFRACCSIEPYDEKNKELRLAYSVEAETFDHL
KKFSRVFFFDRENKRTNVLSRVVRVHTNGRTECQAVTGYIKANTRDIQTP
VRFRLKYSLVEPPLADSALVRLNPILDQTQAHVDFEGTFQKDCGDDDLCE
SNLIIRVEPNITESSGNEYTLILDETELEVRINVSNLADSAYEAQLFIAH
QAGVSYVATKKPTNATCNSYNTTLVACSLGNPMLRDTTTFVTIRFQPKGL
EPSEKIMLFHIFANTTSKLVGPERPERDLRVNVVRRAKLNFRGWAIPEQS
FYSGSSVANSVANTAATDIEGHGPMGMDDVGSQVHHMFTIFNEGPSTAPK
VQMVIHWPYSLYSDPQSGRPVQYLLYLEQVPTVEVSQGECHVAKEYVNPL
NLASGSRENPAYLSAPAQMRMFPSQSRHSFNKSLIHSQRSYYSSSHRDDH
SDDTQSNRNRVRRSFLERVTRLERLMYDPESSNAANGKKQDIVELDCNKG
ATNCVRIECDILNMPALSEAQVVVKARLWNSTLVSEYPRVERVRIFSTAT
AQIPESYGVEVMDHNNIEVETRAYPELRNQQRDTSIPWLIIILGIVGGLL
LLALVTYVLWKVGFFKRIRPTDPTLSGNLEKMNEEKPFLAPSKNTHHVFA
SFLDH

BO10662.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
mew-PE 1146 CG1771-PE 1..1049 1..1049 5516 100 Plus
mew-PF 1243 CG1771-PF 98..1146 1..1049 5516 100 Plus
mew-PB 1146 CG1771-PB 98..1146 1..1049 5516 100 Plus
mew-PA 1049 CG1771-PA 1..1049 1..1049 5516 100 Plus
mew-PD 1058 CG1771-PD 1..1058 1..1049 5491 99.1 Plus