Clone Sequence Records
BO10664.3prime Sequence
830 bp (741 high quality bases) assembled on 2006-04-19
> BO10664.3prime
ATGGTCTAGAAAGCTTGCTTGTACAATAAAATATGATTGAGATCTCACCA
TTTCCTTCCGCAGCGTCGCAATCTGGGCATCCAGAGTGCTGCCCGCCTCG
ACCGCCTGGGGGTTTCCTTTGGCGGATAAGCTGGGGGACTTGGCCTCGGA
TTTGGCCACCAGCATTGGTGGTATGGATGTGTTTCCGTTCGGCGAGGAGG
GCAGTGACTTATCGGTGGCATGCTCCTTGGTATCCTGTGTCTCCACAGCA
AGATTGTCGTTTGGTTTTCGGCTGCCATCGCTGCTGTTATTGTTTCCTTC
CACATCACTCAGGAGTCCCGAATCGGAGCACAGTAACTTGTTGAAGCCGA
TGAGAGATTTCGGCAGCGGGGGCAGCTCGCAAGCCGAGTTTCCACGCTTT
CCGTTGCGAGAACGCTTCTCGCTCTCGGCCTCCTTGACGCTGTCCCAGCT
GTCGCCCACTCCCGAGGACATGTCGTCCAGCCGCTCCTCGTCCTCCATGC
CCGAGTCCTCCAGGCTGATGTGGCAGCTAGTCAGAGTAACTGCCGTGCCG
TTGTCGCCCACCTCGATCCAATCCGAGGTGCGGATGCGCTGGGATCGCTC
GGTTCCGTAGGGCGAGGAGTCTGTGGAGCAGCCCGAGGGGCAGCGCTTCC
TCGAGGACGAGCCCTCCTTGCCAATGTTCTCCTTCAGCGATTTATTGACT
GCGTAGGTGAGGGTGTCCTCCTCGTCGACGTCACCATCGGCATCCCTCAC
GTTGTCCGCATCCACATCCTCGGTGTCGGGATCATTCTATAGAGTTGTAG
CGCCTGCGAGATGCCACGCTTTTGGGCGTG
BO10664.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31038-PB | 1818 | CG31038-RB | 1049..1815 | 785..19 | 3760 | 99.6 | Minus |
| CG31038-PD | 1818 | CG31038-RD | 1049..1815 | 785..19 | 3760 | 99.6 | Minus |
| CG31038-PF | 2193 | CG31038-RF | 1049..1785 | 785..49 | 3610 | 99.5 | Minus |
| CG31038-PA | 2193 | CG31038-RA | 1049..1785 | 785..49 | 3610 | 99.5 | Minus |
| CG31038-PE | 2193 | CG31038-RE | 1049..1785 | 785..49 | 3610 | 99.5 | Minus |
| CG31038-PC | 1326 | CG31038-RC | 573..918 | 394..49 | 1730 | 100 | Minus |
| CG31038-PB | 1818 | CG31038-RB | 1005..1049 | 830..786 | 225 | 100 | Minus |
| CG31038-PD | 1818 | CG31038-RD | 1005..1049 | 830..786 | 225 | 100 | Minus |
| CG31038-PF | 2193 | CG31038-RF | 1005..1049 | 830..786 | 225 | 100 | Minus |
| CG31038-PA | 2193 | CG31038-RA | 1005..1049 | 830..786 | 225 | 100 | Minus |
| CG31038-PE | 2193 | CG31038-RE | 1005..1049 | 830..786 | 225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31038-RD | 4246 | CG31038-RD | 2318..3128 | 830..19 | 3990 | 99.5 | Minus |
| CG31038-RB | 3498 | CG31038-RB | 1570..2380 | 830..19 | 3990 | 99.5 | Minus |
| CG31038-RE | 3335 | CG31038-RE | 1507..2287 | 830..49 | 3840 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:38:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29879376..29879810 | 830..395 | 2085 | 99.1 | Minus |
| 3R | 32079331 | 3R | 29897299..29897675 | 395..19 | 1885 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:38:32 has no hits.
BO10664.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:36 Download gff for
BO10664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31038-PD | 1005..1818 | 18..830 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:20 Download gff for
BO10664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31038-PD | 1005..1818 | 18..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:27:40 Download gff for
BO10664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31038-RB | 1570..2385 | 11..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:33 Download gff for
BO10664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31038-RB | 1570..2385 | 11..830 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:33 Download gff for
BO10664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29879376..29879810 | 395..830 | 99 | -> | Minus |
| 3R | 29897300..29897680 | 11..394 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:27:40 Download gff for
BO10664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25705098..25705532 | 395..830 | 99 | -> | Minus |
| arm_3R | 25723022..25723402 | 11..394 | 98 | | Minus |
BO10664.5prime Sequence
870 bp (828 high quality bases) assembled on 2006-04-19
> BO10664.5prime
GAAGTTATCAGTCGACATGGCCACCACAGCCGCCGGATCAGCAGCCACCA
CCACCAACACGATGGTGGTGAAGCGGCCAGGACCACCAGTGCCGCCCAGG
CCCAAAGCAGCAGCTCAGCTGGCCAATGGAGCAGGAGCCCCTCCGATCAT
TCAGAAGAAGCCCACCTTCGTGAGCCAGCTGAGTGCAGTGGGTCGTACCT
TGGTCTACAAGTCGCCAACGGTCAATCTGCCCAAGAAACAGGCCCAGACC
CAGACGCCCACCACGGCGGTGCCAACGCCGCCGGTGAAGCCCCTGAAGCT
GCGCAAGGCACCGGATGTGCCCACGGCCAAGCCCAGGGATTCAATGACCT
CGGTGGTCACGGTCAACCGGCATAACTCGATAAGCGTGATCGGGAGCACG
CCACAGACCACACCCCGCAAGGACACCCGCTTGAGCCTGGGAAAGGTGGA
CTTCGAGAGGGCGGGCCTCCAGCCGGCCAGTCAGCCACTTCCCAGGCCAC
GGAAAATTGTTCAAGTGCCCGTGGCCACTCTAGATGTGGAAGACATACCA
GTGGTGGCTCCCAGCCCATCATCAAATGGACTCTTCAGGCGATCAAAGAC
CACCCTGGATGGCAGCCAGAAGGATTCGGCATCCTCCCCGCACAATGGAG
GAGGATTCCTGTCCGGACGGACCGTGGAGATCAAGAATAATCTGAAGAAC
GCCGCCGAGCGTTTGTTCTCGGAGATAATCATCAACCAGAGCCAGAAACA
GGCAGCCACCGACACCACCATCATAACCAAGCACGAGGCCCTGAAGCAGG
AGTCCGATGTCCTGGCCATCCAGTCATCGGGCAACTGCATGAAGATCAAT
GTTAACGGCGGCCAGACGAG
BO10664.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31038-PF | 2193 | CG31038-RF | 1..854 | 17..870 | 4245 | 99.8 | Plus |
| CG31038-PA | 2193 | CG31038-RA | 1..854 | 17..870 | 4245 | 99.8 | Plus |
| CG31038-PB | 1818 | CG31038-RB | 1..854 | 17..870 | 4245 | 99.8 | Plus |
| CG31038-PD | 1818 | CG31038-RD | 1..854 | 17..870 | 4245 | 99.8 | Plus |
| CG31038-PE | 2193 | CG31038-RE | 1..854 | 17..870 | 4245 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:24:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31038-RE | 3335 | CG31038-RE | 503..1356 | 17..870 | 4255 | 99.9 | Plus |
| CG31038-RD | 4246 | CG31038-RD | 1314..2167 | 17..870 | 4255 | 99.9 | Plus |
| CG31038-RB | 3498 | CG31038-RB | 566..1419 | 17..870 | 4255 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:24:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29878372..29879225 | 17..870 | 4255 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:24:11 has no hits.
BO10664.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:37 Download gff for
BO10664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31038-PE | 1..854 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:22 Download gff for
BO10664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31038-PE | 1..854 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:14:51 Download gff for
BO10664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31038-RB | 561..1419 | 9..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:37:24 Download gff for
BO10664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31038-RB | 561..1419 | 9..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:37:24 Download gff for
BO10664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29878367..29879225 | 9..870 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:14:51 Download gff for
BO10664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25704089..25704947 | 9..870 | 99 | | Plus |
BO10664.complete Sequence
1849 bp assembled on 2008-01-16
GenBank Submission: FJ631834
> BO10664.complete
GAAGTTATCAGTCGACATGGCCACCACAGCCGCCGGATCAGCAGCCACCA
CCACCAACACGATGGTGGTGAAGCGGCCAGGACCACCAGTGCCGCCCAGG
CCCAAAGCAGCAGCTCAGCTGGCCAATGGAGCAGGAGCCCCTCCGATCAT
TCAGAAGAAGCCCACCTTCGTGAGCCAGCTGAGTGCAGTGGGTCGTACCT
TGGTCTACAAGTCGCCAACGGTCAATCTGCCCAAGAAACAGGCCCAGACC
CAGACGCCCACCACGGCGGTGCCAACGCCGCCGGTGAAGCCCCTGAAGCT
GCGCAAGGCACCGGATGTGCCCACGGCCAAGCCCAGGGATTCAATGACCT
CGGTGGTCACGGTCAACCGGCATAACTCGATAAGCGTGATCGGGAGCACG
CCACAGACCACACCCCGCAAGGACACCCGCTTGAGCCTGGGAAAGGTGGA
CTTCGAGAGGGCGGGCCTCCAGCCGGCCAGTCAGCCACTTCCCAGGCCAC
GGAAAATTGTTCAAGTGCCCGTGGCCACTCTAGATGTGGAAGACATACCA
GTGGTGGCTCCCAGCCCATCATCAAATGGACTCTTCAGGCGATCAAAGAC
CACCCTGGATGGCAGCCAGAAGGATTCGGCATCCTCCCCGCACAATGGAG
GAGGATTCCTGTCCGGACGGACCGTGGAGATCAAGAATAATCTGAAGAAC
GCCGCCGAGCGTTTGTTCTCGGAGATAATCATCAACCAGAGCCAGAAACA
GGCAGCCACCGACACCACCATCATAACCAAGCACGAGGCCCTGAAGCAGG
AGTCCGATGTCCTGGCCATCCAGTCATCGGGCAACTGCATGAGGATCAAT
GTTAACGGCGGCCAGACGAGCACCATGAAGAGCTCGATCAGCGTGGGCAA
CACGCCGCAAAAGAAGCAAGCCTTCCACGAGATGCTCATCTCGGAGCTGG
CTGCCATGCGGAACAAGTCCTGCTCCCTGGAGCAGCTACCCACCGCCAAG
TCGCCGCCACCCACCACTTCCACGCCCAAAAGCGTGGCATCTCGCAGGCG
CTACAACTCTATAGATGATGCCGACACCGAGGATGTGGATGCGGACAACG
TGGAGGATGCCGATGGTGACGTCGACGAGGAGGACACCCTCACCTACGCA
GTCAATAAATCGCTGAAGGAGAACATTGGCAAGGAGGGCTCGTCCTCGAG
GAAGCGCTGCCCCTCGGGCTGCTCCACAGACTCCTCGCCCTACGGAACCG
AGCGATCCCAGCGCATCCGCACCTCGGATTGGATCGAGGTGGGCGACAAC
GGCACGGCAGTTACTCTGACTAGCTGCCACATCAGCCTGGAGGACTCGGG
CATGGAGGACGAGGAGCGGCTGGACGACATGTCCTCGGGAGTGGGCGACA
GCTGGGACAGCGTCAAGGAGGCCGAGAGCGAGAAGCGTTCTCGCAACGGA
AAGCGTGGAAACTCGGCTTGCGAGCTGCCCCCGCTGCCGAAATCTCTCAT
CGGCTTCAACAAGTTACTGTGCTCCGATTCGGGACTCCTGAGTGATGTGG
AAGGAAACAATAACAGCAGCGATGGCAGCCGAAAACCAAACGACAATCTT
GCTGTGGAGACACAGGATACCAAGGAGCATGCCACCGATAAGTCACTGCC
CTCCTCGCCGAACGGAAACACATCCATACCACCAATGCTGGTGGCCAAAT
CCGAGGCCAAGTCCCCCAGCTTATCCGCCAAAGGAAACCCCCAGGCGGTC
GAGGCGGGCAGCACTCTGGATGCCCAGATTGCGACGCTGCGGAAGGAAAT
GGTGAGATCTCAATCATATTTTATTGTACAAGCAAGCTTTCTAGACCAT
BO10664.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:45:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31038-RD | 1818 | CG31038-PD | 1..1815 | 17..1831 | 9075 | 100 | Plus |
| CG31038-RB | 1818 | CG31038-PB | 1..1815 | 17..1831 | 9075 | 100 | Plus |
| CG31038-RE | 2193 | CG31038-PE | 1..1785 | 17..1801 | 8925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:45:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31038-RD | 4246 | CG31038-RD | 1314..3128 | 17..1831 | 9075 | 100 | Plus |
| CG31038-RB | 3498 | CG31038-RB | 566..2380 | 17..1831 | 9075 | 100 | Plus |
| CG31038-RE | 3335 | CG31038-RE | 503..2287 | 17..1801 | 8925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:45:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29878372..29879810 | 17..1455 | 7195 | 100 | Plus |
| 3R | 32079331 | 3R | 29897299..29897675 | 1455..1831 | 1885 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:45:14 has no hits.
BO10664.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:22 Download gff for
BO10664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31038-RD | 1..1818 | 17..1832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:35:49 Download gff for
BO10664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31038-RD | 1290..3104 | 17..1833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:29 Download gff for
BO10664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31038-RB | 566..2380 | 17..1833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:56:22 Download gff for
BO10664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31038-RD | 1285..3109 | 9..1839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:17:37 Download gff for
BO10664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31038-RB | 566..2380 | 17..1833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:17:37 Download gff for
BO10664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29878372..29879810 | 17..1455 | 100 | -> | Plus |
| 3R | 29897300..29897675 | 1456..1833 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:29 Download gff for
BO10664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25704094..25705532 | 17..1455 | 100 | -> | Plus |
| arm_3R | 25723022..25723397 | 1456..1833 | 99 | | Plus |
BO10664.pep Sequence
Translation from 16 to 1849
> BO10664.pep
MATTAAGSAATTTNTMVVKRPGPPVPPRPKAAAQLANGAGAPPIIQKKPT
FVSQLSAVGRTLVYKSPTVNLPKKQAQTQTPTTAVPTPPVKPLKLRKAPD
VPTAKPRDSMTSVVTVNRHNSISVIGSTPQTTPRKDTRLSLGKVDFERAG
LQPASQPLPRPRKIVQVPVATLDVEDIPVVAPSPSSNGLFRRSKTTLDGS
QKDSASSPHNGGGFLSGRTVEIKNNLKNAAERLFSEIIINQSQKQAATDT
TIITKHEALKQESDVLAIQSSGNCMRINVNGGQTSTMKSSISVGNTPQKK
QAFHEMLISELAAMRNKSCSLEQLPTAKSPPPTTSTPKSVASRRRYNSID
DADTEDVDADNVEDADGDVDEEDTLTYAVNKSLKENIGKEGSSSRKRCPS
GCSTDSSPYGTERSQRIRTSDWIEVGDNGTAVTLTSCHISLEDSGMEDEE
RLDDMSSGVGDSWDSVKEAESEKRSRNGKRGNSACELPPLPKSLIGFNKL
LCSDSGLLSDVEGNNNSSDGSRKPNDNLAVETQDTKEHATDKSLPSSPNG
NTSIPPMLVAKSEAKSPSLSAKGNPQAVEAGSTLDAQIATLRKEMVRSQS
YFIVQASFLDH
BO10664.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31038-PD | 605 | CG31038-PD | 1..605 | 1..605 | 3075 | 100 | Plus |
| CG31038-PB | 605 | CG31038-PB | 1..605 | 1..605 | 3075 | 100 | Plus |
| CG31038-PE | 730 | CG31038-PE | 1..595 | 1..595 | 3027 | 100 | Plus |
| CG31038-PA | 730 | CG31038-PA | 1..595 | 1..595 | 3027 | 100 | Plus |
| CG31038-PG | 412 | CG31038-PG | 161..277 | 479..595 | 588 | 99.1 | Plus |
