Clone Sequence Records
BO10667.3prime Sequence
894 bp (794 high quality bases) assembled on 2006-04-19
> BO10667.3prime
ATGGTCTAGAAAGCTTGCGACTGCCGCTGTCGGCCCAGGAGGAGTTGAGA
TACTCGTCGTCATCGTCTTGCTCAAGTTTCCTTGCACTGAGTTGGACGTG
GAGATAGCTCCGTTCTCCAGCGAATCCCTCGATAGCTCGTCGGCCATCTG
GACTTTCAGCTGGTGACCGAACGAGTTGATCTCCGAGTTGGGCGTCATCT
GCGAGCCCGCCGGACTCTGCGCGATGTACGGACCCGGCGTGGTGACGGAG
CCACCCTGCGATATGGAGGCGGTCATGCCGGGACCGCCGTTGGGCAGGAC
ACCCTCCAGACAACTGTCGTTGGTGGTTGAGTCCATGTTAATGATTTGGC
TACCGGCCACATTGTCCGCCAGGACTGCACCATCGCTGTCGTCCACGGCA
TCGATATCATCGATGTCCATGTCTTCGGCGTTCTTGTCCAACGGCGCCGT
CTCCTCATCCTCGTTGTATATCTTGAAGTAGGCATACGTCAGATAAATCA
CCGAGATGATGAACGAGGGTATTGGAATGGCCATCGAGTAGACCAAGTTT
AGGGTGTTCTGCCAGTAGTCCAGGTCGCTGATGACCAGACTTGGGTCCAC
CTTGGAGTAGTAGCAGGGGAACTTCATGCCGATCTTGGTGTACCTCTTTA
GCCAGATGGTACAGTTGAGCATTGGCGGGTAGCCACAGCCCTTTACATTC
GGAAAGAGCCTGGCTCCCACATAGTAGTACATGGAGCGGTTCCCCATCAG
GCCCTCGTTCAGCTCGGAGATCTCGTCGAACGGCCTCCGCTCGTCCGAAA
TGAGGGTACCCGAAGCGCTCAGACCGCGCGTATCCTCCGAATCCTCAATG
AGGTAGCCATGGGAGCCGTCGGCATCCCCAAAATTGAGCTGTTC
BO10667.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1232-PA | 1359 | tipE-RA | 481..1356 | 894..19 | 4355 | 99.8 | Minus |
CG1232-PB | 1359 | tipE-RB | 481..1356 | 894..19 | 4355 | 99.8 | Minus |
CG18675-PA | 876 | CG18675-RA | 762..823 | 80..19 | 310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tipE-RB | 3938 | CG1232-RB | 1527..2402 | 894..19 | 4365 | 99.9 | Minus |
tipE-RA | 3396 | CG1232-RA | 1673..2548 | 894..19 | 4365 | 99.9 | Minus |
CG18675-RA | 1608 | CG18675-RA | 831..892 | 80..19 | 310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4191072..4191886 | 894..80 | 4060 | 99.9 | Minus |
3L | 28110227 | 3L | 4192191..4192252 | 80..19 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:26:45 has no hits.
BO10667.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:43 Download gff for
BO10667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tipE-PB | 481..1359 | 16..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:29 Download gff for
BO10667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1232-PB | 481..1359 | 16..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:01:03 Download gff for
BO10667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tipE-RA | 1673..2552 | 15..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:22:08 Download gff for
BO10667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tipE-RA | 1673..2552 | 15..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:22:08 Download gff for
BO10667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4191072..4191886 | 80..894 | 99 | -> | Minus |
3L | 4192192..4192256 | 15..79 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:01:03 Download gff for
BO10667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4191072..4191886 | 80..894 | 99 | -> | Minus |
arm_3L | 4192192..4192256 | 15..79 | 96 | | Minus |
BO10667.5prime Sequence
830 bp (794 high quality bases) assembled on 2006-04-19
> BO10667.5prime
GAAGTTATCAGTCGACATGGGAGACGAGCAGGACAAACGCACCGGCAAGG
AGAAGCTGCTCTTCTACACCACCGCCTTCTTCATCCTGCTGGGCACCTTC
AGCCTGTTCGCCTTCCTCTTCCTGGTGCCCTTCGTCATCGAGCCCGCCTT
CACCACGATCTTCATGCAGTTCGAGGAGGTTCCGGCGCTCTGCGAAACGT
ACGACACGGAGATCTACTACGGGGCCAAGAACTGTTCGTGGTCGTCCTGC
CGCGAGGGCTGCACCAAGGACATCTATACGTGCACCCAGATTCGGGTGAA
CTACCGTCTCAATCTATATAACTTCACCGATGAGTTCAACTTCACGGAGT
ACCACATCAATCTCAAGGAGGCGGAGCGCATCCTGCCGCCCGTCAAGCGA
ACGGATCGCTATGAGAGAGCTCTGAGGAGCGACTACGAGTACGATAATCT
GGGTGGTGGCAGCGGCTTGGACATCGACTTAGGCGCCGGCCGGATGGAAC
AGCTCAATTTTGGGGATGCCGACGGCTCCAATGGCTACCTCATTGAGGAT
TCGGAGGATACGCGCGGTCTGAGCGCTTCGGGTACCCTCATTTCGGACGA
GCGGAGGCCGTTCGACGAGATCTCCGAGCTGAACGAGGGCCTGATGGGGA
ACCGCTCCATGTACTACTATGTGGGAGCCAGGCTCTTTCCGAATGTAAAG
GGCTGTGGCTACCCGCCAATGCTCAACTGTACCATCTGGCTAAAGAGGTA
CACCAAGATCGGCATGAAGTTCCCCTGCTACTACTCCAAGGTGGACCCAA
GTCTGGTCATCAGCGACCTGGACTACTGGC
BO10667.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1232-PA | 1359 | tipE-RA | 1..814 | 17..830 | 4045 | 99.8 | Plus |
CG1232-PB | 1359 | tipE-RB | 1..814 | 17..830 | 4045 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:16:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tipE-RB | 3938 | CG1232-RB | 1045..1860 | 15..830 | 4065 | 99.9 | Plus |
tipE-RA | 3396 | CG1232-RA | 1191..2006 | 15..830 | 4065 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:16:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4190590..4191405 | 15..830 | 4065 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:16:11 has no hits.
BO10667.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:44 Download gff for
BO10667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tipE-PB | 1..814 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:30 Download gff for
BO10667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1232-PB | 1..814 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:42:11 Download gff for
BO10667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tipE-RA | 1191..2006 | 15..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:51:51 Download gff for
BO10667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tipE-RA | 1191..2006 | 15..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:51:51 Download gff for
BO10667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4190590..4191405 | 15..830 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:42:11 Download gff for
BO10667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4190590..4191405 | 15..830 | 99 | | Plus |
BO10667.complete Sequence
1390 bp assembled on 2008-11-10
GenBank Submission: KX795267
> BO10667.complete
GAAGTTATCAGTCGACATGGGAGACGAGCAGGACAAACGCACCGGCAAGG
AGAAGCTGCTCTTCTACACCACCGCCTTCTTCATCCTGCTGGGCACCTTC
AGCCTGTTCGCCTTCCTCTTCCTGGTGCCCTTCGTCATCGAGCCCGCCTT
CACCACGATCTTCATGCAGTTCGAGGAGGTTCCGGCGCTCTGCGAAACGT
ACGACACGGAGATCTACTACGGGGCCAAGAACTGTTCGTGGTCGTCCTGC
CGCGAGGGCTGCACCAAGGACATCTATACGTGCACCCAGATTCGGGTGAA
CTACCGTCTCAATCTATATAACTTCACCGATGAGTTCAACTTCACGGAGT
ACCACATCAATCTCAAGGAGGCGGAGCGCATCCTGCCGCCCGTCAAGCGA
ACGGATCGCTATGAGAGAGCTCTGAGGAGCGACTACGAGTACGATAATCT
GGGTGGTGGCACCGGCTTGGACATCGACTTAGGCGCCGGCCGGATGGAAC
AGCTCAATTTTGGGGATGCCGACGGCTCCAATGGCTACCTCATTGAGGAT
TCGGAGGATACGCGCGGTCTGAGCGCTTCGGGTACCCTCATTTCGGACGA
GCGGAGGCCGTTCGACGAGATCTCCGAGCTGAACGAGGGCCTGATGGGGA
ACCGCTCCATGTACTACTATGTGGGAGCCAGGCTCTTTCCGAATGTAAAG
GGCTGTGGCTACCCGCCAATGCTCAACTGTACCATCTGGCTAAAGAGGTA
CACCAAGATCGGCATGAAGTTCCCCTGCTACTACTCCAAGGTGGACCCAA
GTCTGGTCATCAGCGACCTGGACTACTGGCAGAACACCCTAAACTTGGTC
TACTCGATGGCCATTCCAATACCCTCGTTCATCATCTCGGTGATTTATCT
GACGTATGCCTACTTCAAGATATACAACGAGGATGAGGAGACGGCGCCGT
TGGACAAGAACGCCGAAGACATGGACATCGATGATATCGATGCCGTGGAC
GACAGCGATGGTGCAGTCCTGGCGGACAATGTGGCCGGTAGCCAAATCAT
TAACATGGACTCAACCACCAACGACAGTTGTCTGGAGGGTGTCCTGCCCA
ACGGCGGTCCCGGCATGACCGCCTCCATATCGCAGGGTGGCTCCGTCACC
ACGCCGGGTCCGTACATCGCGCAGAGTCCGGCGGGCTCGCAGATGACGCC
CAACTCGGAGATCAACTCGTTCGGTCACCAGCTGAAAGTCCAGATGGCCG
ACGAGCTATCGAGGGATTCGCTGGAGAACGGAGCTATCTCCACGTCCAAC
TCAGTGCAAGGAAACTTGAGCAAGACGATGACGACGAGTATCTCAACTCC
TCCTGGGCCGACAGCGGCAGTCGCAAGCTTTCTAGACCAT
BO10667.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:40:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tipE-RB | 1359 | CG1232-PB | 1..1356 | 17..1372 | 6780 | 100 | Plus |
tipE-RA | 1359 | CG1232-PA | 1..1356 | 17..1372 | 6780 | 100 | Plus |
CG18675-RA | 876 | CG18675-PA | 762..823 | 1311..1372 | 310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:40:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tipE-RB | 3938 | CG1232-RB | 1045..2402 | 15..1372 | 6790 | 100 | Plus |
tipE-RA | 3396 | CG1232-RA | 1191..2548 | 15..1372 | 6790 | 100 | Plus |
CG18675-RA | 1608 | CG18675-RA | 831..892 | 1311..1372 | 310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:40:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4190590..4191886 | 15..1311 | 6485 | 100 | Plus |
3L | 28110227 | 3L | 4192191..4192252 | 1311..1372 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:40:27 has no hits.
BO10667.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:48 Download gff for
BO10667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tipE-RB | 1014..2375 | 15..1376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:48 Download gff for
BO10667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tipE-RA | 1193..2548 | 17..1374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:27 Download gff for
BO10667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tipE-RB | 1016..2371 | 17..1374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:54 Download gff for
BO10667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tipE-RA | 1193..2548 | 17..1374 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:54 Download gff for
BO10667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4192192..4192252 | 1312..1374 | 96 | | Plus |
3L | 4190592..4191886 | 17..1311 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:48 Download gff for
BO10667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4190592..4191886 | 17..1311 | 100 | -> | Plus |
arm_3L | 4192192..4192252 | 1312..1374 | 96 | | Plus |
BO10667.pep Sequence
Translation from 16 to 1390
> BO10667.pep
MGDEQDKRTGKEKLLFYTTAFFILLGTFSLFAFLFLVPFVIEPAFTTIFM
QFEEVPALCETYDTEIYYGAKNCSWSSCREGCTKDIYTCTQIRVNYRLNL
YNFTDEFNFTEYHINLKEAERILPPVKRTDRYERALRSDYEYDNLGGGTG
LDIDLGAGRMEQLNFGDADGSNGYLIEDSEDTRGLSASGTLISDERRPFD
EISELNEGLMGNRSMYYYVGARLFPNVKGCGYPPMLNCTIWLKRYTKIGM
KFPCYYSKVDPSLVISDLDYWQNTLNLVYSMAIPIPSFIISVIYLTYAYF
KIYNEDEETAPLDKNAEDMDIDDIDAVDDSDGAVLADNVAGSQIINMDST
TNDSCLEGVLPNGGPGMTASISQGGSVTTPGPYIAQSPAGSQMTPNSEIN
SFGHQLKVQMADELSRDSLENGAISTSNSVQGNLSKTMTTSISTPPGPTA
AVASFLDH
BO10667.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:24:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tipE-PB | 452 | CG1232-PB | 1..452 | 1..452 | 2385 | 100 | Plus |
tipE-PA | 452 | CG1232-PA | 1..452 | 1..452 | 2385 | 100 | Plus |
Teh2-PA | 309 | CG15004-PA | 73..166 | 3..96 | 224 | 45.7 | Plus |
Teh2-PB | 313 | CG15004-PB | 73..166 | 3..96 | 224 | 45.7 | Plus |
Teh1-PA | 279 | CG12806-PA | 37..143 | 8..110 | 206 | 42.1 | Plus |
Teh2-PA | 309 | CG15004-PA | 196..271 | 226..299 | 163 | 42.1 | Plus |
Teh2-PB | 313 | CG15004-PB | 196..271 | 226..299 | 163 | 42.1 | Plus |