Clone BO10667 Report

Search the DGRC for BO10667

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:106
Well:67
Vector:pDNR-Dual
Associated Gene/TranscripttipE-RA
Protein status:BO10667.pep: Imported from assembly
Sequenced Size:1390

Clone Sequence Records

BO10667.3prime Sequence

894 bp (794 high quality bases) assembled on 2006-04-19

> BO10667.3prime
ATGGTCTAGAAAGCTTGCGACTGCCGCTGTCGGCCCAGGAGGAGTTGAGA
TACTCGTCGTCATCGTCTTGCTCAAGTTTCCTTGCACTGAGTTGGACGTG
GAGATAGCTCCGTTCTCCAGCGAATCCCTCGATAGCTCGTCGGCCATCTG
GACTTTCAGCTGGTGACCGAACGAGTTGATCTCCGAGTTGGGCGTCATCT
GCGAGCCCGCCGGACTCTGCGCGATGTACGGACCCGGCGTGGTGACGGAG
CCACCCTGCGATATGGAGGCGGTCATGCCGGGACCGCCGTTGGGCAGGAC
ACCCTCCAGACAACTGTCGTTGGTGGTTGAGTCCATGTTAATGATTTGGC
TACCGGCCACATTGTCCGCCAGGACTGCACCATCGCTGTCGTCCACGGCA
TCGATATCATCGATGTCCATGTCTTCGGCGTTCTTGTCCAACGGCGCCGT
CTCCTCATCCTCGTTGTATATCTTGAAGTAGGCATACGTCAGATAAATCA
CCGAGATGATGAACGAGGGTATTGGAATGGCCATCGAGTAGACCAAGTTT
AGGGTGTTCTGCCAGTAGTCCAGGTCGCTGATGACCAGACTTGGGTCCAC
CTTGGAGTAGTAGCAGGGGAACTTCATGCCGATCTTGGTGTACCTCTTTA
GCCAGATGGTACAGTTGAGCATTGGCGGGTAGCCACAGCCCTTTACATTC
GGAAAGAGCCTGGCTCCCACATAGTAGTACATGGAGCGGTTCCCCATCAG
GCCCTCGTTCAGCTCGGAGATCTCGTCGAACGGCCTCCGCTCGTCCGAAA
TGAGGGTACCCGAAGCGCTCAGACCGCGCGTATCCTCCGAATCCTCAATG
AGGTAGCCATGGGAGCCGTCGGCATCCCCAAAATTGAGCTGTTC

BO10667.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG1232-PA 1359 tipE-RA 481..1356 894..19 4355 99.8 Minus
CG1232-PB 1359 tipE-RB 481..1356 894..19 4355 99.8 Minus
CG18675-PA 876 CG18675-RA 762..823 80..19 310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
tipE-RB 3938 CG1232-RB 1527..2402 894..19 4365 99.9 Minus
tipE-RA 3396 CG1232-RA 1673..2548 894..19 4365 99.9 Minus
CG18675-RA 1608 CG18675-RA 831..892 80..19 310 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4191072..4191886 894..80 4060 99.9 Minus
3L 28110227 3L 4192191..4192252 80..19 310 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:26:45 has no hits.

BO10667.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:43 Download gff for BO10667.3prime
Subject Subject Range Query Range Percent Splice Strand
tipE-PB 481..1359 16..894 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:29 Download gff for BO10667.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1232-PB 481..1359 16..894 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:01:03 Download gff for BO10667.3prime
Subject Subject Range Query Range Percent Splice Strand
tipE-RA 1673..2552 15..894 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:22:08 Download gff for BO10667.3prime
Subject Subject Range Query Range Percent Splice Strand
tipE-RA 1673..2552 15..894 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:22:08 Download gff for BO10667.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4191072..4191886 80..894 99 -> Minus
3L 4192192..4192256 15..79 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:01:03 Download gff for BO10667.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4191072..4191886 80..894 99 -> Minus
arm_3L 4192192..4192256 15..79 96   Minus

BO10667.5prime Sequence

830 bp (794 high quality bases) assembled on 2006-04-19

> BO10667.5prime
GAAGTTATCAGTCGACATGGGAGACGAGCAGGACAAACGCACCGGCAAGG
AGAAGCTGCTCTTCTACACCACCGCCTTCTTCATCCTGCTGGGCACCTTC
AGCCTGTTCGCCTTCCTCTTCCTGGTGCCCTTCGTCATCGAGCCCGCCTT
CACCACGATCTTCATGCAGTTCGAGGAGGTTCCGGCGCTCTGCGAAACGT
ACGACACGGAGATCTACTACGGGGCCAAGAACTGTTCGTGGTCGTCCTGC
CGCGAGGGCTGCACCAAGGACATCTATACGTGCACCCAGATTCGGGTGAA
CTACCGTCTCAATCTATATAACTTCACCGATGAGTTCAACTTCACGGAGT
ACCACATCAATCTCAAGGAGGCGGAGCGCATCCTGCCGCCCGTCAAGCGA
ACGGATCGCTATGAGAGAGCTCTGAGGAGCGACTACGAGTACGATAATCT
GGGTGGTGGCAGCGGCTTGGACATCGACTTAGGCGCCGGCCGGATGGAAC
AGCTCAATTTTGGGGATGCCGACGGCTCCAATGGCTACCTCATTGAGGAT
TCGGAGGATACGCGCGGTCTGAGCGCTTCGGGTACCCTCATTTCGGACGA
GCGGAGGCCGTTCGACGAGATCTCCGAGCTGAACGAGGGCCTGATGGGGA
ACCGCTCCATGTACTACTATGTGGGAGCCAGGCTCTTTCCGAATGTAAAG
GGCTGTGGCTACCCGCCAATGCTCAACTGTACCATCTGGCTAAAGAGGTA
CACCAAGATCGGCATGAAGTTCCCCTGCTACTACTCCAAGGTGGACCCAA
GTCTGGTCATCAGCGACCTGGACTACTGGC

BO10667.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1232-PA 1359 tipE-RA 1..814 17..830 4045 99.8 Plus
CG1232-PB 1359 tipE-RB 1..814 17..830 4045 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
tipE-RB 3938 CG1232-RB 1045..1860 15..830 4065 99.9 Plus
tipE-RA 3396 CG1232-RA 1191..2006 15..830 4065 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4190590..4191405 15..830 4065 99.9 Plus
Blast to na_te.dros performed on 2015-02-12 19:16:11 has no hits.

BO10667.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:44 Download gff for BO10667.5prime
Subject Subject Range Query Range Percent Splice Strand
tipE-PB 1..814 17..830 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:30 Download gff for BO10667.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1232-PB 1..814 17..830 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:42:11 Download gff for BO10667.5prime
Subject Subject Range Query Range Percent Splice Strand
tipE-RA 1191..2006 15..830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:51:51 Download gff for BO10667.5prime
Subject Subject Range Query Range Percent Splice Strand
tipE-RA 1191..2006 15..830 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:51:51 Download gff for BO10667.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4190590..4191405 15..830 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:42:11 Download gff for BO10667.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4190590..4191405 15..830 99   Plus

BO10667.complete Sequence

1390 bp assembled on 2008-11-10

GenBank Submission: KX795267

> BO10667.complete
GAAGTTATCAGTCGACATGGGAGACGAGCAGGACAAACGCACCGGCAAGG
AGAAGCTGCTCTTCTACACCACCGCCTTCTTCATCCTGCTGGGCACCTTC
AGCCTGTTCGCCTTCCTCTTCCTGGTGCCCTTCGTCATCGAGCCCGCCTT
CACCACGATCTTCATGCAGTTCGAGGAGGTTCCGGCGCTCTGCGAAACGT
ACGACACGGAGATCTACTACGGGGCCAAGAACTGTTCGTGGTCGTCCTGC
CGCGAGGGCTGCACCAAGGACATCTATACGTGCACCCAGATTCGGGTGAA
CTACCGTCTCAATCTATATAACTTCACCGATGAGTTCAACTTCACGGAGT
ACCACATCAATCTCAAGGAGGCGGAGCGCATCCTGCCGCCCGTCAAGCGA
ACGGATCGCTATGAGAGAGCTCTGAGGAGCGACTACGAGTACGATAATCT
GGGTGGTGGCACCGGCTTGGACATCGACTTAGGCGCCGGCCGGATGGAAC
AGCTCAATTTTGGGGATGCCGACGGCTCCAATGGCTACCTCATTGAGGAT
TCGGAGGATACGCGCGGTCTGAGCGCTTCGGGTACCCTCATTTCGGACGA
GCGGAGGCCGTTCGACGAGATCTCCGAGCTGAACGAGGGCCTGATGGGGA
ACCGCTCCATGTACTACTATGTGGGAGCCAGGCTCTTTCCGAATGTAAAG
GGCTGTGGCTACCCGCCAATGCTCAACTGTACCATCTGGCTAAAGAGGTA
CACCAAGATCGGCATGAAGTTCCCCTGCTACTACTCCAAGGTGGACCCAA
GTCTGGTCATCAGCGACCTGGACTACTGGCAGAACACCCTAAACTTGGTC
TACTCGATGGCCATTCCAATACCCTCGTTCATCATCTCGGTGATTTATCT
GACGTATGCCTACTTCAAGATATACAACGAGGATGAGGAGACGGCGCCGT
TGGACAAGAACGCCGAAGACATGGACATCGATGATATCGATGCCGTGGAC
GACAGCGATGGTGCAGTCCTGGCGGACAATGTGGCCGGTAGCCAAATCAT
TAACATGGACTCAACCACCAACGACAGTTGTCTGGAGGGTGTCCTGCCCA
ACGGCGGTCCCGGCATGACCGCCTCCATATCGCAGGGTGGCTCCGTCACC
ACGCCGGGTCCGTACATCGCGCAGAGTCCGGCGGGCTCGCAGATGACGCC
CAACTCGGAGATCAACTCGTTCGGTCACCAGCTGAAAGTCCAGATGGCCG
ACGAGCTATCGAGGGATTCGCTGGAGAACGGAGCTATCTCCACGTCCAAC
TCAGTGCAAGGAAACTTGAGCAAGACGATGACGACGAGTATCTCAACTCC
TCCTGGGCCGACAGCGGCAGTCGCAAGCTTTCTAGACCAT

BO10667.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
tipE-RB 1359 CG1232-PB 1..1356 17..1372 6780 100 Plus
tipE-RA 1359 CG1232-PA 1..1356 17..1372 6780 100 Plus
CG18675-RA 876 CG18675-PA 762..823 1311..1372 310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
tipE-RB 3938 CG1232-RB 1045..2402 15..1372 6790 100 Plus
tipE-RA 3396 CG1232-RA 1191..2548 15..1372 6790 100 Plus
CG18675-RA 1608 CG18675-RA 831..892 1311..1372 310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4190590..4191886 15..1311 6485 100 Plus
3L 28110227 3L 4192191..4192252 1311..1372 310 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:40:27 has no hits.

BO10667.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:48 Download gff for BO10667.complete
Subject Subject Range Query Range Percent Splice Strand
tipE-RB 1014..2375 15..1376 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:48 Download gff for BO10667.complete
Subject Subject Range Query Range Percent Splice Strand
tipE-RA 1193..2548 17..1374 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:27 Download gff for BO10667.complete
Subject Subject Range Query Range Percent Splice Strand
tipE-RB 1016..2371 17..1374 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:54 Download gff for BO10667.complete
Subject Subject Range Query Range Percent Splice Strand
tipE-RA 1193..2548 17..1374 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:54 Download gff for BO10667.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4192192..4192252 1312..1374 96   Plus
3L 4190592..4191886 17..1311 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:48 Download gff for BO10667.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4190592..4191886 17..1311 100 -> Plus
arm_3L 4192192..4192252 1312..1374 96   Plus

BO10667.pep Sequence

Translation from 16 to 1390

> BO10667.pep
MGDEQDKRTGKEKLLFYTTAFFILLGTFSLFAFLFLVPFVIEPAFTTIFM
QFEEVPALCETYDTEIYYGAKNCSWSSCREGCTKDIYTCTQIRVNYRLNL
YNFTDEFNFTEYHINLKEAERILPPVKRTDRYERALRSDYEYDNLGGGTG
LDIDLGAGRMEQLNFGDADGSNGYLIEDSEDTRGLSASGTLISDERRPFD
EISELNEGLMGNRSMYYYVGARLFPNVKGCGYPPMLNCTIWLKRYTKIGM
KFPCYYSKVDPSLVISDLDYWQNTLNLVYSMAIPIPSFIISVIYLTYAYF
KIYNEDEETAPLDKNAEDMDIDDIDAVDDSDGAVLADNVAGSQIINMDST
TNDSCLEGVLPNGGPGMTASISQGGSVTTPGPYIAQSPAGSQMTPNSEIN
SFGHQLKVQMADELSRDSLENGAISTSNSVQGNLSKTMTTSISTPPGPTA
AVASFLDH

BO10667.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
tipE-PB 452 CG1232-PB 1..452 1..452 2385 100 Plus
tipE-PA 452 CG1232-PA 1..452 1..452 2385 100 Plus
Teh2-PA 309 CG15004-PA 73..166 3..96 224 45.7 Plus
Teh2-PB 313 CG15004-PB 73..166 3..96 224 45.7 Plus
Teh1-PA 279 CG12806-PA 37..143 8..110 206 42.1 Plus
Teh2-PA 309 CG15004-PA 196..271 226..299 163 42.1 Plus
Teh2-PB 313 CG15004-PB 196..271 226..299 163 42.1 Plus