Clone BO10669 Report

Search the DGRC for BO10669

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:106
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG11353-RA
Protein status:BO10669.pep:
Sequenced Size:2296

Clone Sequence Records

BO10669.3prime Sequence

902 bp (813 high quality bases) assembled on 2006-04-19

> BO10669.3prime
ATGGTCTAGAAAGCTTGCAATCGATTTTGGCTTGCTCTGCCGTCGATTTA
GCAAACTTGAAAGATTGCTGAAGGGCAGCTCAAAGGCCAGCGAAAAGAGG
ATGGAAGCCAGGTAGACTATGACAGCAAAGCCGCAGGTCACCACGCACAG
CATGAAAGGATCCGCATGTGTGCTCGCGTTGGTTAAACTGTAGAATAACG
CTATGACCAGCGGATTGAGAAGGTAAATGGCGTAGGACAGTCGACTGACA
TGTTGGAAGCCCTTGGCCTCCAGCAGGCGTGACCACCACACCCCCCGGCC
ATCGCAGCTGCGCGCTATCATCCAGCATACACTAAGCGAAAAGAACAGGC
GACCCATCACAAAAAGCGTGATGGCCATCAGAGGTCCAAGATCCCGTTTG
ACAGTCGAATAAATGCAGGCGAAGAAGACGAATAAGGCGAAGTGCCAGCA
TGCCCGTTCCTTTTGCTCGCTGATCTCCAACTGGACTCGATTCTCTTGCA
ATAGCCAAGCCGTTACAGCTCCCAGGATATATGGAAGGACCCTTACGAAG
GGCGATGTATAGATCTCTGTTCCAGTGGCAAAGGCCGCGTCGAAGGACAA
TTGGAACTTGATGCTCAGTCCGATGCCGTAGGACCAAGCGATGGTGGCCA
CAAAAGAAGATACCACTAGAGACTTTACCACCTTGGGATATTTCACATAG
AGGAACAGCAGAGCGTTGGCCAGGATAAAGAACTGCATTTCGCAGGCCAA
GGACCAACTCCAATTGGCGCACATGTCCCGATGGTCGAAGAGGTTTTGAA
TGAACAAAAGATTGCGCCACCAGTGACGTGTACACATCTCATCGAATCGC
TCGTTGATGTGGTAAACTGAGACATCTCCCATATAGGCGTATACCAAGTC
CA

BO10669.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11353-PA 2265 CG11353-RA 1379..2262 902..19 4395 99.8 Minus
CG11353-PB 2265 CG11353-RB 1379..2262 902..19 4395 99.8 Minus
CG30471-PA 2202 CG30471-RA 2127..2174 97..50 140 91.6 Minus
CG30471-PA 2202 CG30471-RA 1936..1962 288..262 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11353-RB 3115 CG11353-RB 1957..2840 902..19 4405 99.9 Minus
CG11353-RA 2910 CG11353-RA 1752..2635 902..19 4405 99.9 Minus
CG30471-RB 2435 CG30471-RB 1420..1607 902..715 400 80.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:24:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4538251..4538794 691..148 2720 100 Minus
3L 28110227 3L 4537970..4538180 902..692 1040 99.5 Minus
3L 28110227 3L 4538866..4538995 148..19 650 100 Minus
2R 25286936 2R 15536650..15536837 902..715 400 80.9 Minus
2R 25286936 2R 15537536..15537622 136..50 210 82.8 Minus
2R 25286936 2R 15537328..15537410 288..206 190 81.9 Minus
Blast to na_te.dros performed on 2015-02-03 16:24:59 has no hits.

BO10669.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:47 Download gff for BO10669.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11353-PA 1380..2265 15..901 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:36 Download gff for BO10669.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11353-PB 1380..2265 15..901 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:26:37 Download gff for BO10669.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11353-RA 1753..2647 6..901 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:53:52 Download gff for BO10669.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11353-RA 1753..2647 6..901 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:53:52 Download gff for BO10669.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4537971..4538180 692..901 99 -> Minus
3L 4538251..4538794 148..691 100 -> Minus
3L 4538867..4539007 6..147 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:26:37 Download gff for BO10669.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4537971..4538180 692..901 99 -> Minus
arm_3L 4538251..4538794 148..691 100 -> Minus
arm_3L 4538867..4539007 6..147 96   Minus

BO10669.5prime Sequence

814 bp (739 high quality bases) assembled on 2006-04-19

> BO10669.5prime
GAAGTTATCAGTCGACATGGAGATCAGGCGCACCTCTCGACCATATCTTT
GGTACACACCAGTGCTGATGCTGCTCGGCCTTTGGCTGGGTTCGGTTTTG
GCCAAGGGCGCTAGCAATCAGTCGGCCACTACCAACTCACACGCCTGGCA
GCGATATCACAGTCAGGCACTCAATGCGTCGCCAGCGCTGCCCGATGAAT
TGGAAATATTGGATGCCCCCTCTACGATTGAGATACATTCGCCTCATGAA
ACCCATTTGACACGCACCTCCGTCATTTTCGGACTGACCAAAGTGGCCAA
CGAGAGCAGCGTCAGCCAAAAGTGCCACGCGCAGCTGCGACAAATGCAGC
GCGGCATACTCGGCAAACAGCCATGGGCCATGAAGGTTCTGGATGCTTCG
GGAACAAAGCCCTCCGGCTTTGTATATGGTCAAAACTACTGGCTGGGAAG
TCGCGAAGCTTGTCGCGGCGTCCAAAGACCCGTGGGCATAACCCTATCAA
AGAACTTCGATCGTGTTATGCACTATGGAATTATCACCCAGCAGGCGCCC
TTCGACATGGACTATCGGGTTTTATACCTACGTCACAATTCTCCGTGGCA
AGTGGAGATTAAGCTGATGTCTGAGCAGATTATACACATTGGCCTGTGCC
TGCCAAGTGCCTGCAGTTCGGTTGAAGTTCAGAGTCTGGCCCAGGACTAT
GTGGCTGGCGGAATGTTCACTGAAAACGAGATATTCGACATAAAGCCGGA
AGTGGTTTACATGAAGGATCTGCAGCTGAAAGATGAATTCTTCGAGAGGG
CCAGCTTTCGTCTC

BO10669.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11353-PA 2265 CG11353-RA 1..798 17..814 3965 99.8 Plus
CG11353-PB 2265 CG11353-RB 1..798 17..814 3965 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11353-RB 3115 CG11353-RB 578..1376 16..814 3980 99.9 Plus
CG11353-RA 2910 CG11353-RA 373..1171 16..814 3980 99.9 Plus
CG30471-RB 2435 CG30471-RB 285..819 245..779 560 74.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4536889..4537317 386..814 2130 99.8 Plus
3L 28110227 3L 4535993..4536363 16..386 1855 100 Plus
2R 25286936 2R 15535596..15535983 392..779 365 72.9 Plus
2R 25286936 2R 15535384..15535525 245..386 200 76.1 Plus
Blast to na_te.dros performed on 2015-02-13 00:47:21 has no hits.

BO10669.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:48 Download gff for BO10669.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11353-PA 1..798 17..814 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:37 Download gff for BO10669.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11353-PB 1..798 17..814 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:02:38 Download gff for BO10669.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11353-RA 369..1171 8..814 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:48:47 Download gff for BO10669.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11353-RA 369..1171 8..814 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:48:47 Download gff for BO10669.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4535989..4536363 8..386 98 -> Plus
3L 4536890..4537317 387..814 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:02:38 Download gff for BO10669.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4535989..4536363 8..386 98 -> Plus
arm_3L 4536890..4537317 387..814 99   Plus

BO10669.complete Sequence

2296 bp assembled on 2008-01-16

GenBank Submission: FJ631836

> BO10669.complete
GAAGTTATCAGTCGACATGGAGATCAGGCGCACCTCTCGACCATATCTTT
GGTACACACCAGTGCTGATGCTGCTCGGCCTTTGGCTGGGTTCGGTTTTG
GCCAAGGGCGCTAGCAATCAGTCGGCCACTACCAACTCACACGCCTGGCA
GCGATATCACAGTCAGGCACTCAATGCGTCGCCAGCGCTGCCCGATGAAT
TGGAAATATTGGATGCCCCCTCTACGATTGAGATACATTCGCCTCATGAA
ACCCATTTGACACGCACCTCCGTCATTTTCGGACTGACCAAAGTGGCCAA
CGAGAGCAGCGTCAGCCAAAAGTGCCACGCGCAGCTGCGACAAATGCAGC
GCGGCATACTCGGCAAACAGCCATGGGCCATGAAGGTTCTGGATGCTTCG
GGAACAAAGCCCTCCGGCTTTGTATATGGTCAAAACTACTGGCTGGGAAG
TCGCGAAGCTTGTCGCGGCGTCCAAAGACCCGTGGGCATAACCCTATCAA
AGAACTTCGATCGTGTTATGCACTATGGAATTATCACCCAGCAGGCGCCC
TTCGACATGGACTATCGGGTTTTATACCTACGTCACAATTCTCCGTGGCA
AGTGGAGATTAAGCTGATGTCTGAGCAGATTATACACATTGGCCTGTGCC
TGCCAAGTGCCTGCAGTTCGGTTGAAGTTCAGAGTCTGGCCCAGGACTAT
GTGGCTGGCGGAATGTTCACTGAAAACGAGATATTCGACATAAAGCCGGA
AGTGGTTTACATGAAGGATCTGCAGCTGAAGGATGAATTCTTCGAGAGGG
CCAGCTTTCGTCTCTTGGTGGCCTGTGTTCTGCTCACTGTCACTCTGATG
TTTTGTGCTCAACAACTGCATGCGACTAGTAAAATGCCATCTATTTCTGT
GGATCCTCTGGATCGTGACTTGGCACCCGCGGAATCGGAAATATGGCGTG
GACTTAACTCCCTGCTCCAAATAGAGAGACTGCAGCGATATGTAACTTGC
TGGGATGTTCCCGGCAATTGGGCCAAAATTTTTGCGATTAGGGAGAATAC
TGCGAATGAAATTCCCTTGATGAATGGCCTGCGATCTGTATGCGCTATCT
GGATCATGGTCTTCCATGTGGTATGGTTCATGTACTTTACTGTCCACAAT
AAGACGGTGCTGATTTCGTATGCCGAACAGGCCTTCTTCCAATATGTCTC
GTCGGCTCCTCTGCTCGTGGATGTCTTCTTTACCATCAGTGGCTTCCTGC
AAACATTTAACTTCCTCAGGAACTCCCGGCAGTTGGAGGCAGTACGGCAA
AATAGCTTCAGCGAAAATCTAAAACTCTTTGGCAAACTGCTCTTCCATCG
TTATTTGCGTCTTGGACCTCTTTACCTGGTGGTCATGGCCACCGTGGACT
TGGTATACGCCTATATTGGAGATGTCTCAGTTTACCACATCAACGAGCGA
TTCGATGAGATGTGTACACGTCACTGGTGGCGCAATCTTTTGTTCATTCA
AAACCTCTTCGACCATCGGGACATGTGCGCCAATTGGAGTTGGTCCTTGG
CCTGCGAAATGCAGTTCTTTATCCTGGCCAACGCTCTGCTGTTCCTCTAT
GTGAAATATCCCAAGGTGGTAAAGTCTCTAGTGGTATCTTCTTTTGTGGC
CACCATCGCTTGGTCCTACGGCATCGGACTGAGCATCAAGTTCCAATTGT
CCTTCGACGCGGCCTTTGCCACTGGAACAGAGATCTATACATCGCCCTTC
GTAAGGGTCCTTCCATATATCCTGGGAGCTGTAACGGCTTGGCTATTGCA
AGAGAATCGAGTCCAGTTGGAGATCAGCGAGCAAAAGGAACGGGCATGCT
GGCACTTCGCCTTATTCGTCTTCTTCGCCTGCATTTATTCGACTGTCAAA
CGGGATCTTGGACCTCTGATGGCCATCACGCTTTTTGTGATGGGTCGCCT
GTTCTTTTCGCTTAGTGTATGCTGGATGATAGCGCGCAGCTGCGATGGCC
GGGGGGTGTGGTGGTCACGCCTGCTGGAGGCCAAGGGCTTCCAACATGTC
AGTCGACTGTCCTACGCCATTTACCTTCTCAATCCGCTGGTCATAGCGTT
ATTCTACAGTTTAACCAACGCGAGCACACATGCGGATCCTTTCATGCTGT
GCGTGGTGACCTGCGGCTTTGCTGTCATAGTCTACCTGGCTTCCATCCTC
TTTTCGCTGGCCTTTGAGCTGCCCTTCAGCAATCTTTCAAGTTTGCTAAA
TCGACGGCAGAGCAAGCCAAAATCGATTGCAAGCTTTCTAGACCAT

BO10669.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG11353-RB 2265 CG11353-PB 1..2262 17..2278 11310 100 Plus
CG11353-RA 2265 CG11353-PA 1..2262 17..2278 11310 100 Plus
CG30471-RB 2208 CG30471-PB 991..1512 1061..1582 975 79.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG11353-RB 3115 CG11353-RB 578..2840 16..2278 11315 100 Plus
CG11353-RA 2910 CG11353-RA 373..2635 16..2278 11315 100 Plus
CG30471-RB 2435 CG30471-RB 1086..1607 1061..1582 975 79.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4536889..4537742 386..1239 4270 100 Plus
3L 28110227 3L 4538251..4538794 1606..2149 2720 100 Plus
3L 28110227 3L 4535993..4536363 16..386 1855 100 Plus
3L 28110227 3L 4537813..4538180 1238..1605 1840 100 Plus
3L 28110227 3L 4538866..4538995 2149..2278 650 100 Plus
2R 25286936 2R 15536492..15536837 1237..1582 545 77.2 Plus
2R 25286936 2R 15536250..15536428 1061..1239 445 83.2 Plus
2R 25286936 2R 15535596..15535983 392..779 365 72.9 Plus
2R 25286936 2R 15537536..15537622 2161..2247 210 82.8 Plus
2R 25286936 2R 15535384..15535525 245..386 200 76.1 Plus
Blast to na_te.dros performed on 2014-11-27 15:45:07 has no hits.

BO10669.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:25 Download gff for BO10669.complete
Subject Subject Range Query Range Percent Splice Strand
CG11353-RB 1..2265 17..2282 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:24 Download gff for BO10669.complete
Subject Subject Range Query Range Percent Splice Strand
CG11353-RB 570..2831 17..2280 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:43 Download gff for BO10669.complete
Subject Subject Range Query Range Percent Splice Strand
CG11353-RA 374..2635 17..2280 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:56:25 Download gff for BO10669.complete
Subject Subject Range Query Range Percent Splice Strand
CG11353-RB 565..2843 8..2291 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:40 Download gff for BO10669.complete
Subject Subject Range Query Range Percent Splice Strand
CG11353-RA 374..2635 17..2280 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:40 Download gff for BO10669.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4535994..4536363 17..386 100 -> Plus
3L 4536890..4537742 387..1239 100 -> Plus
3L 4537815..4538180 1240..1605 100 -> Plus
3L 4538251..4538794 1606..2149 100 -> Plus
3L 4538867..4538995 2150..2280 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:43 Download gff for BO10669.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4535994..4536363 17..386 100 -> Plus
arm_3L 4536890..4537742 387..1239 100 -> Plus
arm_3L 4537815..4538180 1240..1605 100 -> Plus
arm_3L 4538251..4538794 1606..2149 100 -> Plus
arm_3L 4538867..4538995 2150..2280 98   Plus

BO10669.pep Sequence

Translation from 16 to 2296

> BO10669.pep
MEIRRTSRPYLWYTPVLMLLGLWLGSVLAKGASNQSATTNSHAWQRYHSQ
ALNASPALPDELEILDAPSTIEIHSPHETHLTRTSVIFGLTKVANESSVS
QKCHAQLRQMQRGILGKQPWAMKVLDASGTKPSGFVYGQNYWLGSREACR
GVQRPVGITLSKNFDRVMHYGIITQQAPFDMDYRVLYLRHNSPWQVEIKL
MSEQIIHIGLCLPSACSSVEVQSLAQDYVAGGMFTENEIFDIKPEVVYMK
DLQLKDEFFERASFRLLVACVLLTVTLMFCAQQLHATSKMPSISVDPLDR
DLAPAESEIWRGLNSLLQIERLQRYVTCWDVPGNWAKIFAIRENTANEIP
LMNGLRSVCAIWIMVFHVVWFMYFTVHNKTVLISYAEQAFFQYVSSAPLL
VDVFFTISGFLQTFNFLRNSRQLEAVRQNSFSENLKLFGKLLFHRYLRLG
PLYLVVMATVDLVYAYIGDVSVYHINERFDEMCTRHWWRNLLFIQNLFDH
RDMCANWSWSLACEMQFFILANALLFLYVKYPKVVKSLVVSSFVATIAWS
YGIGLSIKFQLSFDAAFATGTEIYTSPFVRVLPYILGAVTAWLLQENRVQ
LEISEQKERACWHFALFVFFACIYSTVKRDLGPLMAITLFVMGRLFFSLS
VCWMIARSCDGRGVWWSRLLEAKGFQHVSRLSYAIYLLNPLVIALFYSLT
NASTHADPFMLCVVTCGFAVIVYLASILFSLAFELPFSNLSSLLNRRQSK
PKSIASFLDH

BO10669.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11353-PB 754 CG11353-PB 1..754 1..754 3952 100 Plus
CG11353-PA 754 CG11353-PA 1..754 1..754 3952 100 Plus
CG30471-PB 735 CG30471-PB 7..734 16..753 2599 65.3 Plus
CG12990-PA 663 CG12990-PA 37..657 96..751 748 29.3 Plus
CG32645-PB 853 CG32645-PB 442..850 346..750 459 26 Plus