Clone Sequence Records
BO10669.3prime Sequence
902 bp (813 high quality bases) assembled on 2006-04-19
> BO10669.3prime
ATGGTCTAGAAAGCTTGCAATCGATTTTGGCTTGCTCTGCCGTCGATTTA
GCAAACTTGAAAGATTGCTGAAGGGCAGCTCAAAGGCCAGCGAAAAGAGG
ATGGAAGCCAGGTAGACTATGACAGCAAAGCCGCAGGTCACCACGCACAG
CATGAAAGGATCCGCATGTGTGCTCGCGTTGGTTAAACTGTAGAATAACG
CTATGACCAGCGGATTGAGAAGGTAAATGGCGTAGGACAGTCGACTGACA
TGTTGGAAGCCCTTGGCCTCCAGCAGGCGTGACCACCACACCCCCCGGCC
ATCGCAGCTGCGCGCTATCATCCAGCATACACTAAGCGAAAAGAACAGGC
GACCCATCACAAAAAGCGTGATGGCCATCAGAGGTCCAAGATCCCGTTTG
ACAGTCGAATAAATGCAGGCGAAGAAGACGAATAAGGCGAAGTGCCAGCA
TGCCCGTTCCTTTTGCTCGCTGATCTCCAACTGGACTCGATTCTCTTGCA
ATAGCCAAGCCGTTACAGCTCCCAGGATATATGGAAGGACCCTTACGAAG
GGCGATGTATAGATCTCTGTTCCAGTGGCAAAGGCCGCGTCGAAGGACAA
TTGGAACTTGATGCTCAGTCCGATGCCGTAGGACCAAGCGATGGTGGCCA
CAAAAGAAGATACCACTAGAGACTTTACCACCTTGGGATATTTCACATAG
AGGAACAGCAGAGCGTTGGCCAGGATAAAGAACTGCATTTCGCAGGCCAA
GGACCAACTCCAATTGGCGCACATGTCCCGATGGTCGAAGAGGTTTTGAA
TGAACAAAAGATTGCGCCACCAGTGACGTGTACACATCTCATCGAATCGC
TCGTTGATGTGGTAAACTGAGACATCTCCCATATAGGCGTATACCAAGTC
CA
BO10669.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11353-PA | 2265 | CG11353-RA | 1379..2262 | 902..19 | 4395 | 99.8 | Minus |
CG11353-PB | 2265 | CG11353-RB | 1379..2262 | 902..19 | 4395 | 99.8 | Minus |
CG30471-PA | 2202 | CG30471-RA | 2127..2174 | 97..50 | 140 | 91.6 | Minus |
CG30471-PA | 2202 | CG30471-RA | 1936..1962 | 288..262 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:25:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11353-RB | 3115 | CG11353-RB | 1957..2840 | 902..19 | 4405 | 99.9 | Minus |
CG11353-RA | 2910 | CG11353-RA | 1752..2635 | 902..19 | 4405 | 99.9 | Minus |
CG30471-RB | 2435 | CG30471-RB | 1420..1607 | 902..715 | 400 | 80.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:24:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4538251..4538794 | 691..148 | 2720 | 100 | Minus |
3L | 28110227 | 3L | 4537970..4538180 | 902..692 | 1040 | 99.5 | Minus |
3L | 28110227 | 3L | 4538866..4538995 | 148..19 | 650 | 100 | Minus |
2R | 25286936 | 2R | 15536650..15536837 | 902..715 | 400 | 80.9 | Minus |
2R | 25286936 | 2R | 15537536..15537622 | 136..50 | 210 | 82.8 | Minus |
2R | 25286936 | 2R | 15537328..15537410 | 288..206 | 190 | 81.9 | Minus |
Blast to na_te.dros performed on 2015-02-03 16:24:59 has no hits.
BO10669.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:47 Download gff for
BO10669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11353-PA | 1380..2265 | 15..901 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:36 Download gff for
BO10669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11353-PB | 1380..2265 | 15..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:26:37 Download gff for
BO10669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11353-RA | 1753..2647 | 6..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:53:52 Download gff for
BO10669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11353-RA | 1753..2647 | 6..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:53:52 Download gff for
BO10669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4537971..4538180 | 692..901 | 99 | -> | Minus |
3L | 4538251..4538794 | 148..691 | 100 | -> | Minus |
3L | 4538867..4539007 | 6..147 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:26:37 Download gff for
BO10669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4537971..4538180 | 692..901 | 99 | -> | Minus |
arm_3L | 4538251..4538794 | 148..691 | 100 | -> | Minus |
arm_3L | 4538867..4539007 | 6..147 | 96 | | Minus |
BO10669.5prime Sequence
814 bp (739 high quality bases) assembled on 2006-04-19
> BO10669.5prime
GAAGTTATCAGTCGACATGGAGATCAGGCGCACCTCTCGACCATATCTTT
GGTACACACCAGTGCTGATGCTGCTCGGCCTTTGGCTGGGTTCGGTTTTG
GCCAAGGGCGCTAGCAATCAGTCGGCCACTACCAACTCACACGCCTGGCA
GCGATATCACAGTCAGGCACTCAATGCGTCGCCAGCGCTGCCCGATGAAT
TGGAAATATTGGATGCCCCCTCTACGATTGAGATACATTCGCCTCATGAA
ACCCATTTGACACGCACCTCCGTCATTTTCGGACTGACCAAAGTGGCCAA
CGAGAGCAGCGTCAGCCAAAAGTGCCACGCGCAGCTGCGACAAATGCAGC
GCGGCATACTCGGCAAACAGCCATGGGCCATGAAGGTTCTGGATGCTTCG
GGAACAAAGCCCTCCGGCTTTGTATATGGTCAAAACTACTGGCTGGGAAG
TCGCGAAGCTTGTCGCGGCGTCCAAAGACCCGTGGGCATAACCCTATCAA
AGAACTTCGATCGTGTTATGCACTATGGAATTATCACCCAGCAGGCGCCC
TTCGACATGGACTATCGGGTTTTATACCTACGTCACAATTCTCCGTGGCA
AGTGGAGATTAAGCTGATGTCTGAGCAGATTATACACATTGGCCTGTGCC
TGCCAAGTGCCTGCAGTTCGGTTGAAGTTCAGAGTCTGGCCCAGGACTAT
GTGGCTGGCGGAATGTTCACTGAAAACGAGATATTCGACATAAAGCCGGA
AGTGGTTTACATGAAGGATCTGCAGCTGAAAGATGAATTCTTCGAGAGGG
CCAGCTTTCGTCTC
BO10669.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11353-PA | 2265 | CG11353-RA | 1..798 | 17..814 | 3965 | 99.8 | Plus |
CG11353-PB | 2265 | CG11353-RB | 1..798 | 17..814 | 3965 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:47:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11353-RB | 3115 | CG11353-RB | 578..1376 | 16..814 | 3980 | 99.9 | Plus |
CG11353-RA | 2910 | CG11353-RA | 373..1171 | 16..814 | 3980 | 99.9 | Plus |
CG30471-RB | 2435 | CG30471-RB | 285..819 | 245..779 | 560 | 74.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:47:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4536889..4537317 | 386..814 | 2130 | 99.8 | Plus |
3L | 28110227 | 3L | 4535993..4536363 | 16..386 | 1855 | 100 | Plus |
2R | 25286936 | 2R | 15535596..15535983 | 392..779 | 365 | 72.9 | Plus |
2R | 25286936 | 2R | 15535384..15535525 | 245..386 | 200 | 76.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:47:21 has no hits.
BO10669.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:48 Download gff for
BO10669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11353-PA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:37 Download gff for
BO10669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11353-PB | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:02:38 Download gff for
BO10669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11353-RA | 369..1171 | 8..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:48:47 Download gff for
BO10669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11353-RA | 369..1171 | 8..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:48:47 Download gff for
BO10669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4535989..4536363 | 8..386 | 98 | -> | Plus |
3L | 4536890..4537317 | 387..814 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:02:38 Download gff for
BO10669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4535989..4536363 | 8..386 | 98 | -> | Plus |
arm_3L | 4536890..4537317 | 387..814 | 99 | | Plus |
BO10669.complete Sequence
2296 bp assembled on 2008-01-16
GenBank Submission: FJ631836
> BO10669.complete
GAAGTTATCAGTCGACATGGAGATCAGGCGCACCTCTCGACCATATCTTT
GGTACACACCAGTGCTGATGCTGCTCGGCCTTTGGCTGGGTTCGGTTTTG
GCCAAGGGCGCTAGCAATCAGTCGGCCACTACCAACTCACACGCCTGGCA
GCGATATCACAGTCAGGCACTCAATGCGTCGCCAGCGCTGCCCGATGAAT
TGGAAATATTGGATGCCCCCTCTACGATTGAGATACATTCGCCTCATGAA
ACCCATTTGACACGCACCTCCGTCATTTTCGGACTGACCAAAGTGGCCAA
CGAGAGCAGCGTCAGCCAAAAGTGCCACGCGCAGCTGCGACAAATGCAGC
GCGGCATACTCGGCAAACAGCCATGGGCCATGAAGGTTCTGGATGCTTCG
GGAACAAAGCCCTCCGGCTTTGTATATGGTCAAAACTACTGGCTGGGAAG
TCGCGAAGCTTGTCGCGGCGTCCAAAGACCCGTGGGCATAACCCTATCAA
AGAACTTCGATCGTGTTATGCACTATGGAATTATCACCCAGCAGGCGCCC
TTCGACATGGACTATCGGGTTTTATACCTACGTCACAATTCTCCGTGGCA
AGTGGAGATTAAGCTGATGTCTGAGCAGATTATACACATTGGCCTGTGCC
TGCCAAGTGCCTGCAGTTCGGTTGAAGTTCAGAGTCTGGCCCAGGACTAT
GTGGCTGGCGGAATGTTCACTGAAAACGAGATATTCGACATAAAGCCGGA
AGTGGTTTACATGAAGGATCTGCAGCTGAAGGATGAATTCTTCGAGAGGG
CCAGCTTTCGTCTCTTGGTGGCCTGTGTTCTGCTCACTGTCACTCTGATG
TTTTGTGCTCAACAACTGCATGCGACTAGTAAAATGCCATCTATTTCTGT
GGATCCTCTGGATCGTGACTTGGCACCCGCGGAATCGGAAATATGGCGTG
GACTTAACTCCCTGCTCCAAATAGAGAGACTGCAGCGATATGTAACTTGC
TGGGATGTTCCCGGCAATTGGGCCAAAATTTTTGCGATTAGGGAGAATAC
TGCGAATGAAATTCCCTTGATGAATGGCCTGCGATCTGTATGCGCTATCT
GGATCATGGTCTTCCATGTGGTATGGTTCATGTACTTTACTGTCCACAAT
AAGACGGTGCTGATTTCGTATGCCGAACAGGCCTTCTTCCAATATGTCTC
GTCGGCTCCTCTGCTCGTGGATGTCTTCTTTACCATCAGTGGCTTCCTGC
AAACATTTAACTTCCTCAGGAACTCCCGGCAGTTGGAGGCAGTACGGCAA
AATAGCTTCAGCGAAAATCTAAAACTCTTTGGCAAACTGCTCTTCCATCG
TTATTTGCGTCTTGGACCTCTTTACCTGGTGGTCATGGCCACCGTGGACT
TGGTATACGCCTATATTGGAGATGTCTCAGTTTACCACATCAACGAGCGA
TTCGATGAGATGTGTACACGTCACTGGTGGCGCAATCTTTTGTTCATTCA
AAACCTCTTCGACCATCGGGACATGTGCGCCAATTGGAGTTGGTCCTTGG
CCTGCGAAATGCAGTTCTTTATCCTGGCCAACGCTCTGCTGTTCCTCTAT
GTGAAATATCCCAAGGTGGTAAAGTCTCTAGTGGTATCTTCTTTTGTGGC
CACCATCGCTTGGTCCTACGGCATCGGACTGAGCATCAAGTTCCAATTGT
CCTTCGACGCGGCCTTTGCCACTGGAACAGAGATCTATACATCGCCCTTC
GTAAGGGTCCTTCCATATATCCTGGGAGCTGTAACGGCTTGGCTATTGCA
AGAGAATCGAGTCCAGTTGGAGATCAGCGAGCAAAAGGAACGGGCATGCT
GGCACTTCGCCTTATTCGTCTTCTTCGCCTGCATTTATTCGACTGTCAAA
CGGGATCTTGGACCTCTGATGGCCATCACGCTTTTTGTGATGGGTCGCCT
GTTCTTTTCGCTTAGTGTATGCTGGATGATAGCGCGCAGCTGCGATGGCC
GGGGGGTGTGGTGGTCACGCCTGCTGGAGGCCAAGGGCTTCCAACATGTC
AGTCGACTGTCCTACGCCATTTACCTTCTCAATCCGCTGGTCATAGCGTT
ATTCTACAGTTTAACCAACGCGAGCACACATGCGGATCCTTTCATGCTGT
GCGTGGTGACCTGCGGCTTTGCTGTCATAGTCTACCTGGCTTCCATCCTC
TTTTCGCTGGCCTTTGAGCTGCCCTTCAGCAATCTTTCAAGTTTGCTAAA
TCGACGGCAGAGCAAGCCAAAATCGATTGCAAGCTTTCTAGACCAT
BO10669.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:45:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11353-RB | 2265 | CG11353-PB | 1..2262 | 17..2278 | 11310 | 100 | Plus |
CG11353-RA | 2265 | CG11353-PA | 1..2262 | 17..2278 | 11310 | 100 | Plus |
CG30471-RB | 2208 | CG30471-PB | 991..1512 | 1061..1582 | 975 | 79.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:45:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11353-RB | 3115 | CG11353-RB | 578..2840 | 16..2278 | 11315 | 100 | Plus |
CG11353-RA | 2910 | CG11353-RA | 373..2635 | 16..2278 | 11315 | 100 | Plus |
CG30471-RB | 2435 | CG30471-RB | 1086..1607 | 1061..1582 | 975 | 79.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:45:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4536889..4537742 | 386..1239 | 4270 | 100 | Plus |
3L | 28110227 | 3L | 4538251..4538794 | 1606..2149 | 2720 | 100 | Plus |
3L | 28110227 | 3L | 4535993..4536363 | 16..386 | 1855 | 100 | Plus |
3L | 28110227 | 3L | 4537813..4538180 | 1238..1605 | 1840 | 100 | Plus |
3L | 28110227 | 3L | 4538866..4538995 | 2149..2278 | 650 | 100 | Plus |
2R | 25286936 | 2R | 15536492..15536837 | 1237..1582 | 545 | 77.2 | Plus |
2R | 25286936 | 2R | 15536250..15536428 | 1061..1239 | 445 | 83.2 | Plus |
2R | 25286936 | 2R | 15535596..15535983 | 392..779 | 365 | 72.9 | Plus |
2R | 25286936 | 2R | 15537536..15537622 | 2161..2247 | 210 | 82.8 | Plus |
2R | 25286936 | 2R | 15535384..15535525 | 245..386 | 200 | 76.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:45:07 has no hits.
BO10669.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:25 Download gff for
BO10669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11353-RB | 1..2265 | 17..2282 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:24 Download gff for
BO10669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11353-RB | 570..2831 | 17..2280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:43 Download gff for
BO10669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11353-RA | 374..2635 | 17..2280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:56:25 Download gff for
BO10669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11353-RB | 565..2843 | 8..2291 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:40 Download gff for
BO10669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11353-RA | 374..2635 | 17..2280 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:40 Download gff for
BO10669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4535994..4536363 | 17..386 | 100 | -> | Plus |
3L | 4536890..4537742 | 387..1239 | 100 | -> | Plus |
3L | 4537815..4538180 | 1240..1605 | 100 | -> | Plus |
3L | 4538251..4538794 | 1606..2149 | 100 | -> | Plus |
3L | 4538867..4538995 | 2150..2280 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:43 Download gff for
BO10669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4535994..4536363 | 17..386 | 100 | -> | Plus |
arm_3L | 4536890..4537742 | 387..1239 | 100 | -> | Plus |
arm_3L | 4537815..4538180 | 1240..1605 | 100 | -> | Plus |
arm_3L | 4538251..4538794 | 1606..2149 | 100 | -> | Plus |
arm_3L | 4538867..4538995 | 2150..2280 | 98 | | Plus |
BO10669.pep Sequence
Translation from 16 to 2296
> BO10669.pep
MEIRRTSRPYLWYTPVLMLLGLWLGSVLAKGASNQSATTNSHAWQRYHSQ
ALNASPALPDELEILDAPSTIEIHSPHETHLTRTSVIFGLTKVANESSVS
QKCHAQLRQMQRGILGKQPWAMKVLDASGTKPSGFVYGQNYWLGSREACR
GVQRPVGITLSKNFDRVMHYGIITQQAPFDMDYRVLYLRHNSPWQVEIKL
MSEQIIHIGLCLPSACSSVEVQSLAQDYVAGGMFTENEIFDIKPEVVYMK
DLQLKDEFFERASFRLLVACVLLTVTLMFCAQQLHATSKMPSISVDPLDR
DLAPAESEIWRGLNSLLQIERLQRYVTCWDVPGNWAKIFAIRENTANEIP
LMNGLRSVCAIWIMVFHVVWFMYFTVHNKTVLISYAEQAFFQYVSSAPLL
VDVFFTISGFLQTFNFLRNSRQLEAVRQNSFSENLKLFGKLLFHRYLRLG
PLYLVVMATVDLVYAYIGDVSVYHINERFDEMCTRHWWRNLLFIQNLFDH
RDMCANWSWSLACEMQFFILANALLFLYVKYPKVVKSLVVSSFVATIAWS
YGIGLSIKFQLSFDAAFATGTEIYTSPFVRVLPYILGAVTAWLLQENRVQ
LEISEQKERACWHFALFVFFACIYSTVKRDLGPLMAITLFVMGRLFFSLS
VCWMIARSCDGRGVWWSRLLEAKGFQHVSRLSYAIYLLNPLVIALFYSLT
NASTHADPFMLCVVTCGFAVIVYLASILFSLAFELPFSNLSSLLNRRQSK
PKSIASFLDH
BO10669.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11353-PB | 754 | CG11353-PB | 1..754 | 1..754 | 3952 | 100 | Plus |
CG11353-PA | 754 | CG11353-PA | 1..754 | 1..754 | 3952 | 100 | Plus |
CG30471-PB | 735 | CG30471-PB | 7..734 | 16..753 | 2599 | 65.3 | Plus |
CG12990-PA | 663 | CG12990-PA | 37..657 | 96..751 | 748 | 29.3 | Plus |
CG32645-PB | 853 | CG32645-PB | 442..850 | 346..750 | 459 | 26 | Plus |