Clone Sequence Records
BO10670.3prime Sequence
835 bp (793 high quality bases) assembled on 2006-04-19
> BO10670.3prime
ATGGTCTAGAAAGCTTGCGATTCCCGAATTATAGTACGAGTAAACACTGC
TGGGCTGCCGGGTTAAGGCCCGCTTAGCAGCACTGGCCGCCGCTGCCGCT
CCGGCTGCCTCCTGCTGAAAGGCGTTCTCGTACGAGCGCTTCATCGATTG
ACTCAGCGAGGAGTTGCTGGCGGAAGGCGATGCGGCTGCTGCCGCTCCAG
CAACTGCTGCTCCTGGCGCCACTCCAACGCCCGATGCCGCCCCCGCTGCT
GACATATAGCTGAGCGGAAAGGGCGGCAGGTAGGCGGCCGAAGGCCTCTG
CATGAGCACGAATTGCGGCTGACCTTGTTGCAACATGGCACTGGCATAGA
GTTGCTGTTGTTGCTGCTGCTGTTGCAGGTACAGCGGATGCTGTTGCAGC
ATTGCACTGGCATAGAGCTGTTGCTGCTGCTGTTGTTGCTGCTGCTGTTC
AGCGGCCAAGGCAGCAGCTGCAGCCTGCTGTCGCACCAACAAACTTTGCT
GGGCTATGAACTGAGCCTGTTGTTGGGCCAGCAGGGCGGGTGTGGAAGCT
GCTGCAGCAGCCGCAGATCCTGGCGGCGGCAGCGAGAAAGGATTGAGGGC
GTAACCCTGAGGTGCCAAGGCCACCGCGGCATTTTGCAACGAAGCAGCGG
AATGAGCAGCTGCAGCTGCCGACTGCTGACCAGCTGACATGAAGGAGGCC
AAACCGGATGCGGAAGCGGCAGCCGAAAGTCCCGGCAACATAGCCGATGA
GGCGGACAATCCGTGGTGGGCGGCGGCGGCTGCCGCATGGGCGTGGCCCG
TGGCGTGCGCATGCGCATGAGAGTGCGGGTGAGTG
BO10670.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8205-PE | 2904 | fus-RE | 2085..2901 | 835..19 | 4085 | 100 | Minus |
| CG8205-PB | 1902 | fus-RB | 1083..1899 | 835..19 | 4085 | 100 | Minus |
| CG8205-PF | 2904 | fus-RF | 2085..2901 | 835..19 | 4085 | 100 | Minus |
| CG8205-PD | 2904 | fus-RD | 2085..2901 | 835..19 | 4085 | 100 | Minus |
| CG9930-PA | 1575 | E5-RA | 636..662 | 376..350 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:47:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fus-RD | 5256 | CG8205-RD | 2431..3247 | 835..19 | 4085 | 100 | Minus |
| fus-RF | 5243 | CG8205-RF | 2418..3234 | 835..19 | 4085 | 100 | Minus |
| fus-RB | 4375 | CG8205-RB | 1550..2366 | 835..19 | 4085 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:47:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15662025..15662841 | 19..835 | 4085 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 18:47:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6911 | 484..294 | 266 | 64.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2275..2461 | 501..314 | 264 | 64.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6855 | 448..314 | 258 | 70 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6929 | 554..345 | 253 | 61.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6829 | 449..352 | 251 | 76.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6881 | 484..351 | 247 | 68.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6896 | 484..351 | 243 | 68.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2403 | 447..351 | 241 | 74.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2490 | 534..351 | 237 | 61.8 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1065..1157 | 449..351 | 229 | 73.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2885 | 449..325 | 186 | 66.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2628..2838 | 572..357 | 184 | 57.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2540 | 558..325 | 183 | 59.8 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1145 | 440..351 | 181 | 70 | Minus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 513..637 | 473..356 | 175 | 64.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6690..6797 | 466..351 | 174 | 65.5 | Minus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 484..588 | 440..337 | 170 | 67.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2587..2882 | 440..148 | 167 | 56.5 | Minus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 602..760 | 323..484 | 163 | 63.3 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3228..3315 | 444..351 | 159 | 67 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2724..2851 | 446..314 | 157 | 64 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..6820 | 414..313 | 153 | 65.7 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 96..195 | 469..362 | 149 | 67.6 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9126..9225 | 469..362 | 149 | 67.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2376 | 400..351 | 142 | 76 | Minus |
| BS | 5142 | BS BS 5142bp | 2012..2119 | 444..346 | 142 | 64.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1610 | 441..342 | 141 | 67.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2367 | 396..351 | 140 | 78.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2254..2352 | 449..351 | 135 | 62.4 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 862..1012 | 507..350 | 135 | 58.1 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 124..173 | 400..351 | 133 | 74 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9154..9203 | 400..351 | 133 | 74 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1530..1578 | 399..351 | 128 | 73.5 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1088 | 384..351 | 125 | 85.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6947 | 375..148 | 123 | 55.2 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1103 | 399..351 | 119 | 71.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2655 | 399..351 | 117 | 74.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5614..5677 | 414..350 | 116 | 68.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6456..6553 | 449..355 | 115 | 61 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6761 | 405..351 | 113 | 67.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2331 | 376..351 | 112 | 92.3 | Minus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7956..7982 | 380..354 | 108 | 88.9 | Minus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9400..9426 | 380..354 | 108 | 88.9 | Minus |
BO10670.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:49 Download gff for
BO10670.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-PF | 2085..2904 | 18..835 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:38 Download gff for
BO10670.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8205-PD | 2085..2904 | 18..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:14:40 Download gff for
BO10670.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-RB | 1550..2366 | 19..835 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:26:37 Download gff for
BO10670.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-RB | 1550..2366 | 19..835 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:37 Download gff for
BO10670.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15662025..15662841 | 19..835 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:14:40 Download gff for
BO10670.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11549530..11550346 | 19..835 | 100 | | Plus |
BO10670.5prime Sequence
903 bp (861 high quality bases) assembled on 2006-04-19
> BO10670.5prime
GAAGTTATCAGTCGACATGGCGCTTAAGCGGCACAAGCACCACATCGGCA
CCCGCTACATCGAGGTGTACCGGGCATCGGGGGAGGATTTTCTGGCCATT
GCCGGCGGAGCCTCCAATGAGGCGCAAGCCTTCCTTTCGAAGGGCGCCCA
GGTGATCATTCGCATGCGGGGATTACCATACGACGCCACCGCCAAGCAAG
TGCTGGACTTCTTCACCACTGGGGATACTCCGCCCTGCCATGTTCTTGAC
GGGAATGAGGGCGTGCTGTTCGTTAAGAAGCCGGATGGACGGGCCACGGG
TGATGCCTTCGTGCTATTCGCAAACGAGACGGATGCGCCCAAGGCGCTGG
GCCGGCACCGTGAATCCATTGGGCAGCGGTACATTGAGCTATTCCGTTCC
ACGACCGCCGAGGTGCAGCAGGTGCTCAACCGGTCGATGGACCCCAAGAA
CTATGAGTCGGGCGGTGGGCACAGCCAGCCGCCGTTGATTGCCCAACTGC
CCACGATGCAGCTGCCGCTGCTGCCGCAGGTGGGTGCCCACAGCCTCAGC
CACAGCCTCGGAGCCAGCCCCGCTAACCTGTGCCCCCCCGTGCCACCTCC
CGCTCTCCCTCTCCCCACACAGCACCTCATCACCTCGGGCACCACCAAGA
ACTGCATCCGACTGCGCGGACTGCCCTACGAGGCGATGGTCGAGCACATT
CTGCATTTCCTCGATGACTTTGCAAAGCACATCATTTATCAAGGTGTCCA
TATGGTTATCAATGCACAGGGCCAGCCAAGCGGTGAGGCCTTTATCCAGA
TGGACTTGGAGGAGTCAGCGCGTCTGTGTGCTCAGCGCAGGCACAACCAT
TATATGATGTTCGGGCAGAAGTATCGGTACATCGAGGTGTTCCAGTGTTC
CGG
BO10670.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:07:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8205-PE | 2904 | fus-RE | 999..1889 | 13..903 | 4405 | 99.7 | Plus |
| CG8205-PF | 2904 | fus-RF | 999..1889 | 13..903 | 4405 | 99.7 | Plus |
| CG8205-PD | 2904 | fus-RD | 999..1889 | 13..903 | 4405 | 99.7 | Plus |
| CG8205-PC | 2676 | fus-RC | 999..1889 | 13..903 | 4405 | 99.7 | Plus |
| CG8205-PB | 1902 | fus-RB | 1..887 | 17..903 | 4385 | 99.7 | Plus |
| CG8205-PA | 1674 | fus-RA | 1..887 | 17..903 | 4385 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:29:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fus-RC | 3671 | CG8205-RC | 1345..2235 | 13..903 | 4425 | 99.8 | Plus |
| fus-RD | 5256 | CG8205-RD | 1345..2235 | 13..903 | 4425 | 99.8 | Plus |
| fus-RF | 5243 | CG8205-RF | 1332..2222 | 13..903 | 4425 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:29:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15663231..15663799 | 770..202 | 2845 | 100 | Minus |
| 2R | 25286936 | 2R | 15663919..15664108 | 202..13 | 950 | 100 | Minus |
| 2R | 25286936 | 2R | 15663037..15663172 | 903..768 | 650 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:29:10 has no hits.
BO10670.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:50 Download gff for
BO10670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-PF | 990..1889 | 1..903 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:40 Download gff for
BO10670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8205-PC | 990..1889 | 1..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:45:51 Download gff for
BO10670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-RF | 1323..2222 | 1..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:10 Download gff for
BO10670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-RF | 1323..2222 | 1..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:10 Download gff for
BO10670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15663037..15663170 | 770..903 | 98 | <- | Minus |
| 2R | 15663232..15663798 | 203..769 | 100 | <- | Minus |
| 2R | 15663919..15664116 | 1..202 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:45:51 Download gff for
BO10670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11550542..11550675 | 770..903 | 98 | <- | Minus |
| arm_2R | 11550737..11551303 | 203..769 | 100 | <- | Minus |
| arm_2R | 11551424..11551621 | 1..202 | 97 | | Minus |
BO10670.complete Sequence
1933 bp (1933 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631837
> BO10670.complete
GAAGTTATCAGTCGACATGGCGCTTAAGCGGCACAAGCACCACATCGGCA
CCCGCTACATCGAGGTGTACCGGGCATCGGGGGAGGATTTTCTGGCCATT
GCCGGCGGAGCCTCCAATGAGGCGCAAGCCTTCCTTTCGAAGGGCGCCCA
GGTGATCATTCGCATGCGGGGATTACCATACGACGCCACCGCCAAGCAAG
TGCTGGACTTCTTCACCACTGGGGATACTCCGCCCTGCCATGTTCTTGAC
GGGAATGAGGGCGTGCTGTTCGTTAAGAAGCCGGATGGACGGGCCACGGG
TGATGCCTTCGTGCTATTCGCAAACGAGACGGATGCGCCCAAGGCGCTGG
GCCGGCACCGTGAATCCATTGGGCAGCGGTACATTGAGCTATTCCGTTCC
ACGACCGCCGAGGTGCAGCAGGTGCTCAACCGGTCGATGGACCCCAAGAA
CTATGAGTCGGGCGGTGGGCACAGCCAGCCGCCGTTGATTGCCCAACTGC
CCACGATGCAGCTGCCGCTGCTGCCGCAGGTGGGTGCCCACAGCCTCAGC
CACAGCCTCGGAGCCAGCCCCGCTAACCTGTGCCCCCCCGTGCCACCTCC
CGCTCTCCCTCTCCCCACACAGCACCTCATCACCTCGGGCACCACCAAGA
ACTGCATCCGACTGCGCGGACTGCCCTACGAGGCGATGGTCGAGCACATT
CTGCATTTCCTCGATGACTTTGCAAAGCACATCATTTATCAAGGTGTCCA
TATGGTTATCAATGCACAGGGCCAGCCAAGCGGTGAGGCCTTTATCCAGA
TGGACTTGGAGGAGTCAGCGCGTCTGTGTGCTCAGCGCAGGCACAACCAT
TATATGATGTTCGGCAAGAAGTATCGGTACATCGAGGTGTTCCAGTGTTC
CGGGGACGACATGAACATGGTCCTCAACGGAGGTCTGGCCTCACCGGTGG
CACAACCACCGCCGCCTCACCTTGGCCACGCTCACAAGCAGCAATCACTG
CTGGCCGCCACTACGGGTATGTTCAGTTCGGCGGGTCAGTCGCCGACGAC
CGTAGCCGCCGGTACCGCTCAGTCGCCGCTGGGCGGCACTCATACACACA
CTCACCCGCACTCTCATGCGCATGCGCACGCCACGGGCCACGCCCATGCG
GCAGCCGCCGCCGCCCACCACGGATTGTCCGCCTCATCGGCTATGTTGCC
GGGACTTTCGGCTGCCGCTTCCGCATCCGGTTTGGCCTCCTTCATGTCAG
CTGGTCAGCAGTCGGCAGCTGCAGCTGCTCATTCCGCTGCTTCGTTGCAA
AATGCCGCGGTGGCCTTGGCACCTCAGGGTTACGCCCTCAATCCTTTCTC
GCTGCCGCCGCCAGGATCTGCGGCTGCTGCAGCAGCTTCCACACCCGCCC
TGCTGGCCCAACAACAGGCTCAGTTCATAGCCCAGCAAAGTTTGTTGGTG
CGACAGCAGGCTGCAGCTGCTGCCTTGGCCGCTGAACAGCAGCAGCAACA
ACAGCAGCAGCAACAGCTCTATGCCAGTGCAATGCTGCAACAGCATCCGC
TGTACCTGCAACAGCAGCAGCAACAACAGCAACTCTATGCCAGTGCCATG
TTGCAACAAGGTCAGCCGCAATTCGTGCTCATGCAGAGGCCTTCGGCCGC
CTACCTGCCGCCCTTTCCGCTCAGCTATATGTCAGCAGCGGGGGCGGCAT
CGGGCGTTGGAGTGGCGCCAGGAGCAGCAGTTGCTGGAGCGGCAGCAGCC
GCATCGCCTTCCGCCAGCAACTCCTCGCTGAGTCAATCGATGAAGCGCTC
GTACGAGAACGCCTTTCAGCAGGAGGCAGCCGGAGCGGCAGCGGCGGCCA
GTGCTGCTAAGCGGGCCTTAACCCGGCAGCCCAGCAGTGTTTACTCGTAC
TATAATTCGGGAATCGCAAGCTTTCTAGACCAT
BO10670.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:48:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fus-RD | 2904 | CG8205-PD | 999..2901 | 13..1915 | 9515 | 100 | Plus |
| fus-RF | 2904 | CG8205-PF | 999..2901 | 13..1915 | 9515 | 100 | Plus |
| fus-RE | 2904 | CG8205-PE | 999..2901 | 13..1915 | 9515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:48:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fus-RD | 5256 | CG8205-RD | 1345..3247 | 13..1915 | 9515 | 100 | Plus |
| fus-RF | 5243 | CG8205-RF | 1332..3234 | 13..1915 | 9515 | 100 | Plus |
| fus-RB | 4375 | CG8205-RB | 464..2366 | 13..1915 | 9515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:48:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15662025..15663172 | 1915..768 | 5740 | 100 | Minus |
| 2R | 25286936 | 2R | 15663231..15663799 | 770..202 | 2845 | 100 | Minus |
| 2R | 25286936 | 2R | 15663919..15664108 | 202..13 | 950 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 19:48:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6911 | 1450..1640 | 266 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2275..2461 | 1433..1620 | 264 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6855 | 1486..1620 | 258 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6929 | 1380..1589 | 253 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6829 | 1485..1582 | 251 | 76.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6881 | 1450..1583 | 247 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6896 | 1450..1583 | 243 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2403 | 1487..1583 | 241 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2490 | 1400..1583 | 237 | 61.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1065..1157 | 1485..1583 | 229 | 73.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2885 | 1485..1609 | 186 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2628..2838 | 1362..1577 | 184 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2540 | 1376..1609 | 183 | 59.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1145 | 1494..1583 | 181 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6690..6797 | 1468..1583 | 174 | 65.5 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 484..588 | 1494..1597 | 170 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2587..2882 | 1494..1786 | 167 | 56.5 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 602..760 | 1611..1450 | 163 | 63.3 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3228..3315 | 1490..1583 | 159 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2724..2851 | 1488..1620 | 157 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..6820 | 1520..1621 | 153 | 65.7 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 96..195 | 1465..1572 | 149 | 67.6 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9126..9225 | 1465..1572 | 149 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2376 | 1534..1583 | 142 | 76 | Plus |
| BS | 5142 | BS BS 5142bp | 2012..2119 | 1490..1588 | 142 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2367 | 1538..1583 | 140 | 78.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2254..2352 | 1485..1583 | 135 | 62.4 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 862..1012 | 1427..1584 | 135 | 58.1 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 124..173 | 1534..1583 | 133 | 74 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9154..9203 | 1534..1583 | 133 | 74 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1530..1578 | 1535..1583 | 128 | 73.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1088 | 1550..1583 | 125 | 85.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6947 | 1559..1786 | 123 | 55.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1103 | 1535..1583 | 119 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5614..5677 | 1520..1584 | 116 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6456..6553 | 1485..1579 | 115 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6761 | 1529..1583 | 113 | 67.3 | Plus |
BO10670.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:06 Download gff for
BO10670.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-RD | 990..2904 | 1..1916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:25 Download gff for
BO10670.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-RF | 1322..3233 | 1..1915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:36 Download gff for
BO10670.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-RB | 468..2366 | 17..1917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:06 Download gff for
BO10670.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-RF | 1322..3233 | 1..1915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:48 Download gff for
BO10670.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-RB | 468..2366 | 17..1917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:48 Download gff for
BO10670.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15662023..15663170 | 770..1917 | 99 | <- | Minus |
| 2R | 15663232..15663798 | 203..769 | 100 | <- | Minus |
| 2R | 15663919..15664104 | 17..202 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:36 Download gff for
BO10670.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11549528..11550675 | 770..1917 | 99 | <- | Minus |
| arm_2R | 11550737..11551303 | 203..769 | 100 | <- | Minus |
| arm_2R | 11551424..11551609 | 17..202 | 100 | | Minus |
BO10670.pep Sequence
Translation from 16 to 1933
> BO10670.pep
MALKRHKHHIGTRYIEVYRASGEDFLAIAGGASNEAQAFLSKGAQVIIRM
RGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVL
FANETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGG
GHSQPPLIAQLPTMQLPLLPQVGAHSLSHSLGASPANLCPPVPPPALPLP
TQHLITSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINA
QGQPSGEAFIQMDLEESARLCAQRRHNHYMMFGKKYRYIEVFQCSGDDMN
MVLNGGLASPVAQPPPPHLGHAHKQQSLLAATTGMFSSAGQSPTTVAAGT
AQSPLGGTHTHTHPHSHAHAHATGHAHAAAAAAHHGLSASSAMLPGLSAA
ASASGLASFMSAGQQSAAAAAHSAASLQNAAVALAPQGYALNPFSLPPPG
SAAAAAASTPALLAQQQAQFIAQQSLLVRQQAAAAALAAEQQQQQQQQQQ
LYASAMLQQHPLYLQQQQQQQQLYASAMLQQGQPQFVLMQRPSAAYLPPF
PLSYMSAAGAASGVGVAPGAAVAGAAAAASPSASNSSLSQSMKRSYENAF
QQEAAGAAAAASAAKRALTRQPSSVYSYYNSGIASFLDH
BO10670.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fus-PD | 967 | CG8205-PD | 335..967 | 1..633 | 3234 | 100 | Plus |
| fus-PF | 967 | CG8205-PF | 335..967 | 1..633 | 3234 | 100 | Plus |
| fus-PB | 633 | CG8205-PB | 1..633 | 1..633 | 3234 | 100 | Plus |
| fus-PE | 967 | CG8205-PE | 335..967 | 1..633 | 3234 | 100 | Plus |
| fus-PA | 557 | CG8205-PA | 1..375 | 1..367 | 1783 | 92 | Plus |
