Clone Sequence Records
BO10675.3prime Sequence
891 bp (858 high quality bases) assembled on 2006-04-19
> BO10675.3prime
ATGGTCTAGAAAGCTTGCGATGAGCTTGTGCCTGCCGAGGGAAGCCGTGT
GCATGGGACTGCAGTTCTCGATGAGCATGGTCTGGCCCTCTCCAGTCGGT
GATTCTCCACCTTTGTTGTTGTTGTTGTTGTTGTGGTGGACCCTCTTCAT
GGGCCGCTTTCGTTCGATATCCGCACAGGGGTGCAGCTCCACGGTCTGCA
GACTTTGGGCTCGTTGCAGCGATAGCCGGAGGGGTTTCTTGGGCGGAGTG
GGTCTAGTGGTACGCGTCTCAGTCGCAGGCTTCGATTCGTTTTCGCTATC
GAAATCCAGGGATTTTACACTCCTCATATCGCTGGGCAGGCGGGCTCGAA
GTGTGTTCGACTCACTTTGTCGGGGCGTGTCTCGGCGACGATCCAGTCCA
TTGTAATGATTCAGGTGCTCTACACTGCGTGCGTGCGTGCTCATGAGATG
TTCGCGATGCAGTTGCTGCTGTTGCTGGAGAGGATCTCTGGGGCGTTCCC
GGTGCTGGCGATCGCGATGGCGCTCCTTATCACGTCGATGGTGCTGCATA
TAGGCAGAATCGCTATTAATCGAGATCTTCGAGGCGGACAGCGATTTGGA
GGGCATGGAGTACATGTGCGACAGACGATCTCTCAAATCGATGTGGGTAT
TCTCCTTGATCAGTGTTTTGGTTACATGTCCGGGAGGGGTTTGTGTCGAG
GCCATGTCGTCACCCATCAGCTCGATGGGTTTGCCCCCCACCAAAGTGGT
AATATAGTTGCCCCGCTGAAAGATCAACGGTTTCTCGGGCGGTGTTGATG
GAGGTGATGATATGCTGATGCTGGTCACATGCTGAGATTGATTGGAGGAT
GTCTGCTGTGGAATTTGCTGTGGATTTTGCTGTGAATTTTG
BO10675.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30023-PA | 1905 | sprt-RA | 1030..1902 | 891..19 | 4315 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:32:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sprt-RA | 2795 | CG30023-RA | 1602..2474 | 891..19 | 4335 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:32:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11385556..11386049 | 398..891 | 2440 | 99.6 | Plus |
| 2R | 25286936 | 2R | 11385064..11385443 | 19..398 | 1900 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 00:32:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2412 | 547..447 | 127 | 58.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6900 | 546..458 | 120 | 62.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2794..2878 | 524..440 | 118 | 62.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2436..2529 | 546..447 | 116 | 62 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6864 | 547..452 | 111 | 57.3 | Minus |
BO10675.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:58 Download gff for
BO10675.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sprt-PA | 1030..1905 | 18..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:49 Download gff for
BO10675.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30023-PA | 1030..1905 | 18..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:52:35 Download gff for
BO10675.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sprt-RA | 1602..2474 | 19..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:05:26 Download gff for
BO10675.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sprt-RA | 1602..2474 | 19..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:05:26 Download gff for
BO10675.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11385064..11385442 | 19..397 | 100 | <- | Plus |
| 2R | 11385556..11386049 | 398..891 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:52:35 Download gff for
BO10675.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7272569..7272947 | 19..397 | 100 | <- | Plus |
| arm_2R | 7273061..7273554 | 398..891 | 99 | | Plus |
BO10675.5prime Sequence
929 bp (813 high quality bases) assembled on 2006-04-19
> BO10675.5prime
GAAGTTATCAGTCGACATGGACACCGGAAGTGTGGTTAGTGAACCGATTT
CCGCGCATCATCGCGCCTTCGCCAAACAGAAGTCCGCCTCCATGACCATT
CTCAATCCGAAGGGTTGTGGCAGTGCCGTCAAGTACAGTCTGCACTCGAC
TGCAGAGACGAACCAGGAGACTGCCAGTACCACGACCACCTCTACCCATT
GTTCCACAACTGGAAGAAGGCGCAAGGGTGGCTCCCTGGGCGGTACTCTC
TCCTCGCGATCGACGCGCAGCGAATCCAAGGAATTGCGATCGGCTCTTCA
GGATCGGGAGGCTGTCATCCAGAATCTGCGTATACAGCTTTGTCTGGGCA
AACTGCCACGTCCCACGGGACCACCGCTGGATGAGTCCGAGAAGCCGGCG
GCTGAGCAAAAACTAAACAGACTGAAGACGGAGGCGGAGAATAAGCGAAT
TAAGATCAAGAACCTGAAGAGTGCCCTGGAGAAGCTGGACATCACAGACA
ACATAGACATCCGCATCCGTCAAGCCGAATTGGAATACGCACTCGGCAGA
GAAGAACTCCAGATGCTCTCGATTGTGGAGGAGGCTCGCGCCTTGCAGGC
ACGTCTGGAAAAGTCCAAGCCCGAGGCGCAGACCCTCTACAACATCATCA
GCTCTGGAGTCTCCCTGAGTCTGCACGCCGTGCATGCCACCTCGGGAAGA
TGGGCAGTTCAACAGAGGACAGACCAGCCGGGTTTCTACGTAGAATGGGC
TTTAGAGGGTGATGGCTTGTACAAGGGCGATCGCATTTTGGAGATCAACG
GACGACTGGTAACCGGAAAATCCAAGGAAGAGCTGCAGAAGCAAGTAGGA
AACTCTGGCAAGTGTCAGATGGGTGTACTCCGCAAGAAGTCCGTACCTAT
ACCACAAAAGCAACTAGACCAGGAGAAGG
BO10675.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30023-PA | 1905 | sprt-RA | 1..913 | 17..929 | 4540 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sprt-RA | 2795 | CG30023-RA | 573..1485 | 17..929 | 4550 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11386166..11386596 | 929..499 | 2140 | 99.8 | Minus |
| 2R | 25286936 | 2R | 11386663..11387067 | 498..94 | 2025 | 100 | Minus |
| 2R | 25286936 | 2R | 11391071..11391148 | 94..17 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:45:20 has no hits.
BO10675.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:45:59 Download gff for
BO10675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sprt-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:50 Download gff for
BO10675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30023-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:26:55 Download gff for
BO10675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sprt-RA | 567..1485 | 12..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:58:55 Download gff for
BO10675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sprt-RA | 567..1485 | 12..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:58:55 Download gff for
BO10675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11386166..11386596 | 499..929 | 99 | <- | Minus |
| 2R | 11386663..11387066 | 95..498 | 100 | <- | Minus |
| 2R | 11391071..11391154 | 12..94 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:26:55 Download gff for
BO10675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7273671..7274101 | 499..929 | 99 | <- | Minus |
| arm_2R | 7274168..7274571 | 95..498 | 100 | <- | Minus |
| arm_2R | 7278576..7278659 | 12..94 | 96 | | Minus |
BO10675.complete Sequence
1936 bp (1936 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631839
> BO10675.complete
GAAGTTATCAGTCGACATGGACACCGGAAGTGTGGTTAGTGAACCGATTT
CCGCGCATCATCGCGCCTTCGCCAAACAGAAGTCCGCCTCCATGACCATT
CTCAATCCGAAGGGTTGTGGCAGTGCCGTCAAGTACAGTCTGCACTCGAC
TGCAGAGACGAACCAGGAGACTGCCAGTACCACGACCACCTCTACCCATT
GTTCCACAACTGGAAGAAGGCGCAAGGGTGGCTCCCTGGGCGGTACTCTC
TCCTCGCGATCGACGCGCAGCGAATCCAAGGAATTGCGATCGGCTCTTCA
GGATCGGGAGGCTGTCATCCAGAATCTGCGTATACAGCTTTGTCTGGGCA
AACTGCCACGTCCCACGGGACCACCGCTGGATGAGTCCGAGAAGCCGGCG
GCTGAGCAAAAACTAAACAGACTGAAGACGGAGGCGGAGAATAAGCGAAT
TAAGATCAAGAACCTGAAGAGTGCCCTGGAGAAGCTGGACATCACAGACA
ACATAGACATCCGCATCCGTCAAGCCGAATTGGAATACGCACTCGGCAGA
GAAGAACTCCAGATGCTCTCGATTGTGGAGGAGGCTCGCGCCTTGCAGGC
ACGTCTGGAAAAGTCCAAGCCCGAGGCGCAGACCCTCTACAACATCATCA
GCTCTGGAGTCTCCCTGAGTCTGCACGCCGTGCATGCCACCTCGGGAAGA
TGGGCAGTTCAACAGAGGACAGACCAGCCGGGTTTCTACGTAGAATGGGC
TTTAGAGGGTGATGGCTTGTACAAGGGCGATCGCATTTTGGAGATCAACG
GACGACTGGTAACCGGAAAATCCAAGGAAGAGCTGCAGAAGCAAGTAGGA
AACTCTGGCAAGTGTCAGATGGTTGTACTCCGCAAGAAGTCCGTACCTAT
ACCACAAAAGCAACTAGACCAGGAGAAGGAGAACAACATGAGGCTGCAGC
ATCGCATATCGTACCTGGAAGAGCAGGTGCGAGAACTGCAGACAGTCAAG
GAGCATCATCCATCGCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAAAA
TCCACAGCAAAATCCACAGCAAAATCCACAGCAGACATCCTCCAATCAAT
CTCAGCATGTGACCAGCATCAGCATATCATCACCTCCATCAACACCGCCC
GAGAAACCGTTGATCTTTCAGCGGGGCAACTATATTACCACTTTGGTGGG
GGGCAAACCCATCGAGCTGATGGGTGACGACATGGCCTCGACACAAACCC
CTCCCGGACATGTAACCAAAACACTGATCAAGGAGAATACCCACATCGAT
TTGAGAGATCGTCTGTCGCACATGTACTCCATGCCCTCCAAATCGCTGTC
CGCCTCGAAGATCTCGATTAATAGCGATTCTGCCTATATGCAGCACCATC
GACGTGATAAGGAGCGCCATCGCGATCGCCAGCACCGGGAACGCCCCAGA
GATCCTCTCCAGCAACAGCAGCAACTGCATCGCGAACATCTCATGAGCAC
GCACGCACGCAGTGTAGAGCACCTGAATCATTACAATGGACTGGATCGTC
GCCGAGACACGCCCCGACAAAGTGAGTCGAACACACTTCGAGCCCGCCTG
CCCAGCGATATGAGGAGTGTAAAATCCCTGGATTTCGATAGCGAAAACGA
ATCGAAGCCTGCGACTGAGACGCGTACCACTAGACCCACTCCGCCCAAGA
AACCCCTCCGGCTATCGCTGCAACGAGCCCAAAGTCTGCAGACCGTGGAG
CTGCACCCCTGTGCGGATATCGAACGAAAGCGGCCCATGAAGAGGGTCCA
CCACAACAACAACAACAACAACAAAGGTGGAGAATCACCGACTGGAGAGG
GCCAGACCATGCTCATCGAGAACTGCAGTCCCATGCACACGGCTTCCCTC
GGCAGGCACAAGCTCATCGCAAGCTTTCTAGACCAT
BO10675.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:35:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sprt-RA | 1905 | CG30023-PA | 1..1902 | 17..1918 | 9510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:35:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sprt-RA | 2795 | CG30023-RA | 573..2474 | 17..1918 | 9510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:35:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11385556..11386596 | 1539..499 | 5205 | 100 | Minus |
| 2R | 25286936 | 2R | 11386663..11387067 | 498..94 | 2025 | 100 | Minus |
| 2R | 25286936 | 2R | 11385064..11385443 | 1918..1539 | 1900 | 100 | Minus |
| 2R | 25286936 | 2R | 11391071..11391148 | 94..17 | 390 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:35:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2412 | 1390..1490 | 127 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2436..2529 | 1391..1490 | 116 | 62 | Plus |
BO10675.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:07 Download gff for
BO10675.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sprt-RA | 1..1905 | 17..1919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:27 Download gff for
BO10675.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sprt-RA | 565..2472 | 12..1918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:27 Download gff for
BO10675.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sprt-RA | 573..2474 | 17..1920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:07 Download gff for
BO10675.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sprt-RA | 565..2472 | 12..1918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:13 Download gff for
BO10675.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sprt-RA | 573..2474 | 17..1920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:13 Download gff for
BO10675.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11385062..11385442 | 1540..1920 | 99 | <- | Minus |
| 2R | 11385556..11386596 | 499..1539 | 100 | <- | Minus |
| 2R | 11386663..11387066 | 95..498 | 100 | <- | Minus |
| 2R | 11391071..11391148 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:27 Download gff for
BO10675.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7272567..7272947 | 1540..1920 | 99 | <- | Minus |
| arm_2R | 7273061..7274101 | 499..1539 | 100 | <- | Minus |
| arm_2R | 7274168..7274571 | 95..498 | 100 | <- | Minus |
| arm_2R | 7278576..7278653 | 17..94 | 100 | | Minus |
BO10675.pep Sequence
Translation from 16 to 1936
> BO10675.pep
MDTGSVVSEPISAHHRAFAKQKSASMTILNPKGCGSAVKYSLHSTAETNQ
ETASTTTTSTHCSTTGRRRKGGSLGGTLSSRSTRSESKELRSALQDREAV
IQNLRIQLCLGKLPRPTGPPLDESEKPAAEQKLNRLKTEAENKRIKIKNL
KSALEKLDITDNIDIRIRQAELEYALGREELQMLSIVEEARALQARLEKS
KPEAQTLYNIISSGVSLSLHAVHATSGRWAVQQRTDQPGFYVEWALEGDG
LYKGDRILEINGRLVTGKSKEELQKQVGNSGKCQMVVLRKKSVPIPQKQL
DQEKENNMRLQHRISYLEEQVRELQTVKEHHPSQQQQQQQQQQQNPQQNP
QQNPQQTSSNQSQHVTSISISSPPSTPPEKPLIFQRGNYITTLVGGKPIE
LMGDDMASTQTPPGHVTKTLIKENTHIDLRDRLSHMYSMPSKSLSASKIS
INSDSAYMQHHRRDKERHRDRQHRERPRDPLQQQQQLHREHLMSTHARSV
EHLNHYNGLDRRRDTPRQSESNTLRARLPSDMRSVKSLDFDSENESKPAT
ETRTTRPTPPKKPLRLSLQRAQSLQTVELHPCADIERKRPMKRVHHNNNN
NNKGGESPTGEGQTMLIENCSPMHTASLGRHKLIASFLDH
BO10675.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:35:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sprt-PA | 634 | CG30023-PA | 1..634 | 1..634 | 3265 | 100 | Plus |
