Clone Sequence Records
BO10676.3prime Sequence
913 bp (826 high quality bases) assembled on 2006-04-19
> BO10676.3prime
ATGGTCTAGAAAGCTTGCCTCCTCATCCGAGTCGCCATCACTGGAGTAAT
GTGTGATTTGAGGGCGACGAATGAAAGGCGCCGTTATCACTTGTGCAATG
CGGCGGTAGTGATTTAGCCACTCTTCCAGCATCTGGGCGACCAGCAAGGG
ACGCTTGCTTAGCTTTTGTTGCGCCACCAGTAGGCCTCCATCAGTTACGC
ACACGTCCAGCCATTGACGCATCATTGACTCCTCGTTGCCAACCTCCGAC
TGTGTAAGGAAATGTATGGGCAAAAGTTTCAGCTCGCAGTCCATTAGCGG
GAGATAGGTTACGTCCTCCACATCGTCACGCCGCCCATCGATGCGAGTGA
ATGGCTCCATCGGCACCAGGGCGCTGAAATGGCCACGTGTGTAGCCCAGT
GCTATCGGTGACTTGGTGCAAAAGTTTTGATCCCAGAACAAAGGCAAGTA
GACACCTTCGAAACGCGCGTATCCAATGTCCTCGCCCCGAAAACTCTTGA
CGTACTTCACGCCGTAAACGATAATCGGCCGACGAAGGATATGCGCCAGC
GCAAAGATGTGCAGTTGCTCCAGGGACGAGCCGGGTTGGCCGGCCAATGA
CAGTAGTGTACTCCAGTCCTCCTCGAACTGAGAGTCCTCCAGCGTAAAGT
GGAGCATCGAAGCCTGCAGCATCTCGTACTCTTTCCAGCGAGTAAAGAAC
ACATGCCCGCACTGGTGCAGTGTGTCGGCGAGTGCCCGCCTAAGGATATT
GTCACGATCGAAGACGCCCCANGTGGCCTGCATGGCCGAGTCCAGCAGGC
AGTCGCCAGCACTGCGGTTCCACAGTACAAACATCCGTGAGCTCAAGCGA
GCAGTGATCTCCAGCGACAAATTCAAGGGCGGCGGCGGCGTCTCCAGCTG
TTTCTGCGCGTCG
BO10676.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9448-PA | 2337 | CG9448-RA | 1440..2334 | 913..19 | 4381 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trbd-RA | 3679 | CG9448-RA | 2030..2924 | 913..19 | 4419 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:36:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9707373..9707619 | 454..700 | 1235 | 100 | Plus |
| 3R | 32079331 | 3R | 9707105..9707320 | 242..457 | 1080 | 100 | Plus |
| 3R | 32079331 | 3R | 9707683..9707897 | 699..913 | 1019 | 98.1 | Plus |
| 3R | 32079331 | 3R | 9706892..9707042 | 95..245 | 755 | 100 | Plus |
| 3R | 32079331 | 3R | 9706751..9706826 | 19..94 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:36:31 has no hits.
BO10676.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:00 Download gff for
BO10676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9448-PA | 1440..2337 | 18..913 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:52 Download gff for
BO10676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9448-PA | 1440..2337 | 18..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:01:26 Download gff for
BO10676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbd-RA | 2030..2924 | 19..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:11:17 Download gff for
BO10676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbd-RA | 2030..2924 | 19..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:11:17 Download gff for
BO10676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9707685..9707897 | 701..913 | 98 | | Plus |
| 3R | 9706751..9706826 | 19..94 | 100 | <- | Plus |
| 3R | 9706892..9707040 | 95..243 | 100 | <- | Plus |
| 3R | 9707107..9707318 | 244..455 | 100 | <- | Plus |
| 3R | 9707375..9707619 | 456..700 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:01:26 Download gff for
BO10676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5532614..5532762 | 95..243 | 100 | <- | Plus |
| arm_3R | 5532473..5532548 | 19..94 | 100 | <- | Plus |
| arm_3R | 5532829..5533040 | 244..455 | 100 | <- | Plus |
| arm_3R | 5533097..5533341 | 456..700 | 100 | <- | Plus |
| arm_3R | 5533407..5533619 | 701..913 | 98 | | Plus |
BO10676.5prime Sequence
937 bp (799 high quality bases) assembled on 2006-04-19
> BO10676.5prime
GAAGTTATCAGTCGACATGTGCGATACCAAAGACGATGCGCAGAAATGGA
AATGTGAAACTTGCACCTACGAGAACTACCCATCCTCGCTGAAATGCACC
ATGTGCCAGGCGTCCAAGCCGCTGCTCAACGAGGACATCTTCCGTCTGAG
TCCAGCCCAGGAGAGCTGCACCGTTGCGGAGGAGGCGGCTGCCGTCGAAG
TAGCCGTAATGTCGCCCACACCTTCGTCCACGTGCTACTCGCTCCAGCCG
CAGAGCCAGGCACGGCAGAGCAACGTGGCGGACAGCGAAAAGTGGCCCTG
CAAGGTGTGCACCTATCTCAATTGGCCGCGGAGCCTGCGCTGCGTTCAGT
GCTGCACGAAGCGCGGTGGCGAGGCGATAGAGCGTGGCAAAAAGGACATG
GATAACGAGGCGGACGGGGATCGTGCAGGAGAGGCGCTGCAAGCCCTTCG
CATCAGCGGCTCGGAGGAGAACCTGGCCAATAAGCCGGTTCAGCTCATCG
GCGCCACGGCCTCCCATCGTTTGAGCCTTAGTCGTGGCATAGACGATGCG
ACCCATCTGAACAATCTCGCCAATGCGTCTCACAACCAGTCGCAGTCCCA
GCACCGGCAGCCTGTCCTACAGCAGCAGATGCAGCTCCAGCTGCAGCCGC
AGCAACAGCGGGAATCCTCATCCTCCGCCGCCGTCCCGCCGCAGCAGCAG
AAGCAGTGCTATGTCTCCAAATGGGCGTGTAACTCTTGCACTTACGAAAA
CTGGCCGAGGAGCATCAAGTGCTCCATGTGCGGCAAGACGAGGGAGCGGG
AGAATAGTGGGTCGCAGAACGACTTGCACGCCTCATCCAGCCTAAACAGT
CAGGAGGAGAATCAGCAACAACTGCAGCAGCCAAACGTGGATACCGTCAG
CGTTCATAACTCGTTCAATAAGAAGCACATTTACCAA
BO10676.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9448-PA | 2337 | CG9448-RA | 1..921 | 17..937 | 4530 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:42:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trbd-RA | 3679 | CG9448-RA | 591..1511 | 17..937 | 4560 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:42:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9708736..9709325 | 733..144 | 2950 | 100 | Minus |
| 3R | 32079331 | 3R | 9708472..9708675 | 937..734 | 975 | 98.5 | Minus |
| 3R | 32079331 | 3R | 9709388..9709515 | 144..17 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:42:04 has no hits.
BO10676.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:01 Download gff for
BO10676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9448-PA | 1..919 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:53 Download gff for
BO10676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9448-PA | 1..919 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:53:20 Download gff for
BO10676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbd-RA | 583..1509 | 9..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:53:18 Download gff for
BO10676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbd-RA | 583..1509 | 9..935 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:53:18 Download gff for
BO10676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9708474..9708675 | 734..935 | 98 | <- | Minus |
| 3R | 9708736..9709324 | 145..733 | 100 | <- | Minus |
| 3R | 9709388..9709523 | 9..144 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:53:20 Download gff for
BO10676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5534196..5534397 | 734..935 | 98 | <- | Minus |
| arm_3R | 5534458..5535046 | 145..733 | 100 | <- | Minus |
| arm_3R | 5535110..5535245 | 9..144 | 97 | | Minus |
BO10676.complete Sequence
2368 bp assembled on 2007-11-30
GenBank Submission: FJ631840
> BO10676.complete
GAAGTTATCAGTCGACATGTGCGATACCAAAGACGATGCGCAGAAATGGA
AATGTGAAACTTGCACCTACGAGAACTACCCATCCTCGCTGAAATGCACC
ATGTGCCAGGCGTCCAAGCCGCTGCTCAACGAGGACATCTTCCGTCTGAG
TCCAGCCCAGGAGAGCTGCACCGTTGCGGAGGAGGCGGCTGCCGTCGAAG
TAGCCGTAATGTCGCCCACACCTTCGTCCACGTGCTACTCGCTCCAGCCG
CAGAGCCAGGCACGGCAGAGCAACGTGGCGGACAGCGAAAAGTGGCCCTG
CAAGGTGTGCACCTATCTCAATTGGCCGCGGAGCCTGCGCTGCGTTCAGT
GCTGCACGAAGCGCGGTGGCGAGGCGATAGAGCGTGGCAAAAAGGACATG
GATAACGAGGCGGACGGGGATCGTGCAGGAGAGGCGCTGCAAGCCCTTCG
CATCAGCGGCTCGGAGGAGAACCTGGCCAATAAGCCGGTTCAGCTCATCG
GCGCCACGGCCTCCCATCGTTTGAGCCTTAGTCGTGGCATAGACGATGCG
ACCCATCTGAACAATCTCGCCAATGCGTCTCACAACCAGTCGCAGTCCCA
GCACCGGCAGCCTGTCCTACAGCAGCAGATGCAGCTCCAGCTGCAGCCGC
AGCAACAGCGGGAATCCTCATCCTCCGCCGCCGTCCCGCCGCAGCAGCAG
AAGCAGTGCTATGTCTCCAAATGGGCGTGTAACTCTTGCACTTACGAAAA
CTGGCCGAGGAGCATCAAGTGCTCCATGTGCGGCAAGACGAGGGAGCGGG
AGATTAGTGGGTCGCAGAACGACTTGCACGCCTCATCCAGCCTAAACAGT
CAGGAGGAGAATCAGCAACAACTGCAGCAGCCAAACGTGGATACCGTCAG
CGTCAATAACTCGTTCAATAAGAAGCACATTTACCAACTGGGTTCTTCGG
AAACCATCAACAACTGTGATACGCTGCAAGAGCGTCAGGAGCGCCGCCAG
CGTCAAATCCGACGACAGGTGGACTGGCAGTGGCTGAATGCGTGCCTGGG
CGTCGTGGAGAACAACTACAGCGCTGTGGAGGCGTACCTCTCCTGCGGTG
GCAATCCAGCCCGTTCGTTGACCAGCACCGAGATTGCCGCCCTCAACCGC
AACTCGGCCTTCGACGTGGGCCACACCCTGATCCACCTGGCCATTCGTTT
TCATCGCGAGGAGATGTTACCGATGCTGCTGGACCAGATCTCCGGTTCGG
GGCCGGGCATCAAGCGTGTGCCGTCCTACGTGGCTCCCGACTTGGCGGCC
GATATCCGGCGCCACTTTGCCAATACCCTGCGCTTGCGCAAGTCCGGTCT
ACCCTGCCACTATGTGCAAAAGCACGCCACCTTCGCCCTCCCCGCCGAGA
TTGAGGAGCTGCCGATACCCATACAGGAGCAGCTCTACGATGAGCTGCTC
GACCGCGACGCGCAGAAACAGCTGGAGACGCCGCCGCCGGCCTTGAATTG
GTCGCTGGAGATCACTGCTCGCCTGAGCTCACGGATGTTTGTACTGTGGA
ACCGCAGTGCTGGCGACTGCCTGCTGGACTCGGCCATGCAGGCCACCTGG
GGCGTCTTCGATCGTGACAATATCCTTAGGCGGGCACTCGCCGACACACT
GCACCAGTGCGGGCATGTGTTCTTTACTCGCTGGAAAGAGTACGAGATGC
TGCAGGCTTCGATGCTCCACTTTACGCTGGAGGACTCTCAGTTCGAGGAG
GACTGGAGTACACTACTGTCATTGGCCGGCCAACCCGGCTCGTCCCTGGA
GCAACTGCACATCTTTGCGCTGGCGCATATCCTTCGTCGGCCGATTATCG
TTTACGGCGTGAAGTACGTCAAGAGTTTTCGGGGCGAGGACATTGGATAC
GCGCGTTTCGAAGGTGTCTACTTGCCTTTGTTCTGGGATCAAAACTTTTG
CACCAAGTCACCGATAGCACTGGGCTACACACGTGGCCATTTCAGCGCCC
TGGTGCCGATGGAGCCATTCACTCGCATCGATGGGCGGCGTGACGATGTG
GAGGACGTAACCTATCTCCCGCTAATGGACTGCGAGCTGAAACTTTTGCC
CATACATTTCCTTACACAGTCGGAGGTTGGCAACGAGGAGTCAATGATGC
GTCAATGGCTGGACGTGTGCGTAACTGATGGAGGCCTACTGGTGGCGCAA
CAAAAGCTAAGCAAGCGTCCCTTGCTGGTCGCCCAGATGCTGGAAGAGTG
GCTAAATCACTACCGCCGCATTGCACAAGTGATAACGGCGCCTTTCATTC
GTCGCCCTCAAATCACACATTACTCCAGTGATGGCGACTCGGATGAGGAG
GCAAGCTTTCTAGACCAT
BO10676.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:31:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trbd-RA | 2337 | CG9448-PA | 1..2334 | 17..2350 | 11670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:31:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trbd-RA | 3679 | CG9448-RA | 591..2924 | 17..2350 | 11670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:31:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9707683..9708412 | 1670..941 | 3650 | 100 | Minus |
| 3R | 32079331 | 3R | 9708736..9709325 | 733..144 | 2950 | 100 | Minus |
| 3R | 32079331 | 3R | 9707373..9707619 | 1915..1669 | 1235 | 100 | Minus |
| 3R | 32079331 | 3R | 9707105..9707320 | 2127..1912 | 1080 | 100 | Minus |
| 3R | 32079331 | 3R | 9708466..9708675 | 943..734 | 1050 | 100 | Minus |
| 3R | 32079331 | 3R | 9706892..9707042 | 2274..2124 | 755 | 100 | Minus |
| 3R | 32079331 | 3R | 9709388..9709515 | 144..17 | 640 | 100 | Minus |
| 3R | 32079331 | 3R | 9706751..9706826 | 2350..2275 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:31:25 has no hits.
BO10676.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:27 Download gff for
BO10676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9448-RA | 1..2337 | 17..2351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:07:05 Download gff for
BO10676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9448-RA | 578..2919 | 9..2350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:10 Download gff for
BO10676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbd-RA | 591..2924 | 17..2352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:47 Download gff for
BO10676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9448-RA | 586..2919 | 17..2352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:01 Download gff for
BO10676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbd-RA | 591..2924 | 17..2352 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:01 Download gff for
BO10676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9706749..9706826 | 2275..2352 | 97 | <- | Minus |
| 3R | 9706892..9707040 | 2126..2274 | 100 | <- | Minus |
| 3R | 9707107..9707318 | 1914..2125 | 100 | <- | Minus |
| 3R | 9707375..9707619 | 1669..1913 | 100 | <- | Minus |
| 3R | 9707685..9708411 | 942..1668 | 100 | <- | Minus |
| 3R | 9708468..9708675 | 734..941 | 100 | <- | Minus |
| 3R | 9708736..9709324 | 145..733 | 100 | <- | Minus |
| 3R | 9709388..9709515 | 17..144 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:10 Download gff for
BO10676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5532829..5533040 | 1914..2125 | 100 | <- | Minus |
| arm_3R | 5533097..5533341 | 1669..1913 | 100 | <- | Minus |
| arm_3R | 5532471..5532548 | 2275..2352 | 97 | <- | Minus |
| arm_3R | 5532614..5532762 | 2126..2274 | 100 | <- | Minus |
| arm_3R | 5533407..5534133 | 942..1668 | 100 | <- | Minus |
| arm_3R | 5534190..5534397 | 734..941 | 100 | <- | Minus |
| arm_3R | 5534458..5535046 | 145..733 | 100 | <- | Minus |
| arm_3R | 5535110..5535237 | 17..144 | 100 | | Minus |
BO10676.pep Sequence
Translation from 16 to 2368
> BO10676.pep
MCDTKDDAQKWKCETCTYENYPSSLKCTMCQASKPLLNEDIFRLSPAQES
CTVAEEAAAVEVAVMSPTPSSTCYSLQPQSQARQSNVADSEKWPCKVCTY
LNWPRSLRCVQCCTKRGGEAIERGKKDMDNEADGDRAGEALQALRISGSE
ENLANKPVQLIGATASHRLSLSRGIDDATHLNNLANASHNQSQSQHRQPV
LQQQMQLQLQPQQQRESSSSAAVPPQQQKQCYVSKWACNSCTYENWPRSI
KCSMCGKTREREISGSQNDLHASSSLNSQEENQQQLQQPNVDTVSVNNSF
NKKHIYQLGSSETINNCDTLQERQERRQRQIRRQVDWQWLNACLGVVENN
YSAVEAYLSCGGNPARSLTSTEIAALNRNSAFDVGHTLIHLAIRFHREEM
LPMLLDQISGSGPGIKRVPSYVAPDLAADIRRHFANTLRLRKSGLPCHYV
QKHATFALPAEIEELPIPIQEQLYDELLDRDAQKQLETPPPALNWSLEIT
ARLSSRMFVLWNRSAGDCLLDSAMQATWGVFDRDNILRRALADTLHQCGH
VFFTRWKEYEMLQASMLHFTLEDSQFEEDWSTLLSLAGQPGSSLEQLHIF
ALAHILRRPIIVYGVKYVKSFRGEDIGYARFEGVYLPLFWDQNFCTKSPI
ALGYTRGHFSALVPMEPFTRIDGRRDDVEDVTYLPLMDCELKLLPIHFLT
QSEVGNEESMMRQWLDVCVTDGGLLVAQQKLSKRPLLVAQMLEEWLNHYR
RIAQVITAPFIRRPQITHYSSDGDSDEEASFLDH
BO10676.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trbd-PA | 778 | CG9448-PA | 1..778 | 1..778 | 4119 | 100 | Plus |
