Clone BO10677 Report

Search the DGRC for BO10677

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:106
Well:77
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO10677.pep: validated not full length
Sequenced Size:2944

Clone Sequence Records

BO10677.3prime Sequence

980 bp (821 high quality bases) assembled on 2006-04-19

> BO10677.3prime
ATGGTCTAGAAAGCTTGCCAGAGGCGTTGGCGCGGCGCTTAGCTGGAGCT
TCATATCGCACAGTTTCTTGATGTGAACCTGACCGGTAAGCTCCGCCTGC
CGCAGGATTCGCCGGATATCCGCCAATCGATCGTGCTTGTTGGCCAGCAG
ATAGGCGGATTTAAGCTGCCCAATGTAGATGTAGGAGGAGACTCGTAGCT
CCACGCTGCCGATGCGTTTGATCAACCGATCCAGCATCTGTTTCGTCTCC
GGCGCACTGCTGTGCACAGCAGCATTAATGGCAATCGAGAGTATTTCATC
GGACTCCGTGGAAATGTCTCCGCCGTTGTTGCTTCCTATGCAGTCCAGCA
GACGCTCTACCTCACCCAAGCGCTGATTTCTCGACAGGTACTTAGCAGTG
GCTCCAAACACCTTAAGTGCAGCCAGCTTGAAGTCCTGCATAATGCCGTA
AGCCAGGCCAAAACCTTCGTCTATGTTCTTACCGCACATGAGGATCAGAA
TGCAAATTTGTATCCGATCTGCGGCGCCTTCGAACAGAGTAGGTAGAGTT
CCTCGACTGGACTCTAGTCGAATCTGCTTCAGAGTTTGTATAGTTCGTAG
TGGCTCATCTGGCGGCTGTTCTCGCTCACACTTGTCCAAGAACTTAGCCA
CTTCCAACTGTCGCCGGATGGTATTGATGTGTCCATTGAGAGCCCTGGCA
TCCATTTGCATGGCGAAGCAGGCACCTCGAACGCTTGCTGTGCTACTCAC
GCTGTTTCTGCGAGCCTGCTGCCGCTGCAGGTGCTCCCATTCCGCCATAT
CCAGTTCACCCTGAAGATGCCTGAGGGCAGACAGCAAGTGCTGGGCGTTG
GCATGCAGCTTCTGAAAGTCTCGCACTGCAAGGCGTAGAACTCACGCACG
TCATGCTGGCCCGGATGGGATCCTTTAGCAGCAGCTGCAGTTGGTACAGC
GAACTGAGGTGCTGCTGCTGCTCCAGATGT

BO10677.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5270-PB 6732 CG5270-RB 5879..6729 869..19 4255 100 Minus
CG5270-PA 2913 CG5270-RA 2060..2910 869..19 4255 100 Minus
CG5270-PB 6732 CG5270-RB 5766..5854 980..892 420 98.8 Minus
CG5270-PA 2913 CG5270-RA 1947..2035 980..892 420 98.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5270-RB 7465 CG5270-RB 6069..7032 980..19 4755 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:00:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11429109..11429536 446..19 2140 100 Minus
3R 32079331 3R 11428455..11428863 980..574 1930 99.3 Minus
3R 32079331 3R 11428923..11429052 575..446 650 100 Minus
Blast to na_te.dros performed 2015-02-10 20:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2777..2837 980..923 109 67.2 Minus

BO10677.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:02 Download gff for BO10677.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5270-PB 5766..6732 16..980 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:54 Download gff for BO10677.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5270-PA 1947..2913 16..980 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:40:23 Download gff for BO10677.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5270-RB 6069..7032 19..980 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:10 Download gff for BO10677.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5270-RB 6069..7032 19..980 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:10 Download gff for BO10677.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11428455..11428863 574..980 99 -> Minus
3R 11428925..11429052 446..573 100 -> Minus
3R 11429110..11429536 19..445 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:40:23 Download gff for BO10677.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7254177..7254585 574..980 99 -> Minus
arm_3R 7254647..7254774 446..573 100 -> Minus
arm_3R 7254832..7255258 19..445 100   Minus

BO10677.5prime Sequence

954 bp (772 high quality bases) assembled on 2006-04-19

> BO10677.5prime
GAAGTTATCAGTCGACATGGATACCAACGAGCGATCTCCGTTTTGGAAGC
TAATCCGTCATCCTTTGCTCATCGTAGAGCAGTTAGTGATGAATGCTCGC
TTTGAATTGCTGGGAAAGCTACTAGATGCGGCTCGTTCCAAGTTGCTAAA
GGAGAGACCACTTGGACCATGTCCGTACTGTTTTGACAAAACGGGCCATG
TCTATGATGTCCAGTCCAGTGCTGGTTTAGGAAGTGGAGCGGGAGAAACA
CCGGCAAAGATACGTTTTCAACTGGGACAAACAACATCCGAGGCTTTTAT
TCTGCTCAACTTCAATTCCTACCAGCAGGATCACTTTGTGGGTCAGGATT
GTTTGGACCTATTACTGCGAATTTACGCCAGCAAAGCTCTGGACTACCAT
GTGGCGAATGTGCGTGCTGCTTCTGAGCCCAGTTCTCTTGGCACAGATGT
ACATAATTCACTGGACTCTCTTTGTGGTGCCTTCGTGATGCCCAAGCAAG
CACCCAACCGACAGCAGTGGACGCGGGACGAGGAGGCCAGCCACTGCATG
TGCTGTCGCCGAGCAGCATTCACTATGTTGATGCGGAGACATCATTGCCG
TAGGTGCGGGCGGGTGGTATGCTACGCCTGCTCCACCCATCGAATACGCA
TCCCAGAGCTTTACGACGAGTTGGAGGTGCGGATCTGCAACGATTGTGCA
GCGTGCAGCACGCCTGCCAAGGATCAAGGTGATGGCACTTCTAGTGAGCG
GAGTGCTATCTCGGGACAAGTATCAAAATCTTCTGGACGGAGTGATTCCT
GCAAATGGCAGTTGAGTGGGATTATACACACGATAAACTGCTGCGCGAGG
AGTTCTCCTATGAACACGCGCCCAGTGTGGGCCTCAAGTTTGTCATACTT
CGCAATCATGTCGAGCAGCGCAGTTGCGTTGATTTGCTGCTCTTCCACTG
TCGC

BO10677.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5270-PB 6732 CG5270-RB 3820..4628 17..825 4045 100 Plus
CG5270-PA 2913 CG5270-RA 1..809 17..825 4045 100 Plus
CG5270-PB 6732 CG5270-RB 4698..4758 894..954 305 100 Plus
CG5270-PA 2913 CG5270-RA 879..939 894..954 305 100 Plus
CG5270-PB 6732 CG5270-RB 4629..4690 825..886 285 98.3 Plus
CG5270-PA 2913 CG5270-RA 810..871 825..886 285 98.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5270-RB 7465 CG5270-RB 4123..5061 17..954 4610 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11426394..11427332 17..954 4555 99.3 Plus
Blast to na_te.dros performed on 2015-02-02 13:03:57 has no hits.

BO10677.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:03 Download gff for BO10677.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5270-PB 3820..4758 17..954 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:55 Download gff for BO10677.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5270-PA 1..939 17..954 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:06:07 Download gff for BO10677.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5270-RB 4123..5061 17..954 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:45:51 Download gff for BO10677.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5270-RB 4123..5061 17..954 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:45:51 Download gff for BO10677.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11426394..11427332 17..954 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:06:07 Download gff for BO10677.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7252116..7253054 17..954 99   Plus

BO10677.complete Sequence

2944 bp (2944 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631841

> BO10677.complete
GAAGTTATCAGTCGACATGGATACCAACGAGCGATCTCCGTTTTGGAAGC
TAATCCGTCATCCTTTGCTCATCGTAGAGCAGTTAGTGATGAATGCTCGC
TTTGAATTGCTGGGAAAGCTACTAGATGCGGCTCGTTCCAAGTTGCTAAA
GGAGAGACCACTTGGACCATGTCCGTACTGTTTTGACAAAACGGGCCATG
TCTATGATGTCCAGTCCAGTGCTGGTTTAGGAAGTGGAGCGGGAGAAACA
CCGGCAAAGATACGTTTTCAACTGGGACAAACAACATCCGAGGCTTTTAT
TCTGCTCAACTTCAATTCCTACCAGCAGGATCACTTTGTGGGTCAGGATT
GTTTGGACCTATTACTGCGAATTTACGCCAGCAAAGCTCTGGACTACCAT
GTGGCGAATGTGCGTGCTGCTTCTGAGCCCAGTTCTCTTGGCACAGATGT
ACATAATTCACTGGACTCTCTTTGTGGTGCCTTCGTGATGCCCAAGCAAG
CACCCAACCGACAGCAGTGGACGCGGGACGAGGAGGCCAGCCACTGCATG
TGCTGTCGCCGAGCAGCATTCACTATGTTGATGCGGAGACATCATTGCCG
TAGGTGCGGGCGGGTGGTATGCTACGCCTGCTCCACCCATCGAATACGCA
TCCCAGAGCTTTACGACGAGTTGGAGGTGCGGATCTGCAACGATTGTGCA
GCGTGCAGCACGCCTGCCAAGGATCAAGGTGATGGCACTTCTAGTGAGCG
GAGTGCTATCTCGGGACAAGTATCAAAATCTTCTGGACGGAGTGATTCCT
GCAAATGGCAGTTGAGTGGGATTATTACACACGATAAACTGCTGCGCGAG
GAGTTCTCCTATGAACACGCGCCCAGTGTGGCCCTCAGTTTGTCCATACT
TCGCAATCATGTCGAGCAGCGCAGTTGCGTTGATTTGCTGCTCTTCCACT
GTCGCAAACTGGAAAAGCTAATTGTGCCCAATCCAGAGGTGGACTACGGT
TTGGTGGCCAAGATGATAAACTGTCTGGCTTTCGCCGCAAAAGTTCGTGG
CGCACCAGGAGAGCTGGAAAACATTCGTGAGCACTCGGAAATTATAATGG
CAGTGGTTCAGCAGGGCTGTGAGTCGCTGATCCCAACTGGACCGCTCAAT
AACCACAATCTGCGCAAGCTGGCTGACGCTTTGGTGGAAGCGGAGCACTG
GACTCTAGCTCTGGAAGTGCATCTGAAGTGTGGTTTCGCCACCACCGGCG
TAATGGCGGCCCACGGACTAGCCTGCCTTCGTGCTGGTTGCTATGATGCA
GCCCGAGAAAAGTTTGCGCACTGCATGACTCGCCTCTCAAGTGAGCAGCT
CAATAGCAGCATCTGTAAGAACATTTTCGGAGTGGCTTCTACGGAGGCAG
TGCTCTTGCCCAGAAAGCGACCACAGCGCGGACCGGCACTGCTTCAAGAA
ATCCTACAGTTGATAGCCGCCATTCCTCAAGTTCAAACCCAACCGGAGAC
CCTTCACCGAGCCTCACTTATTCGTAGTTCGAATACTTCTCTGGCCTCAC
TTTTCACACGACGTCGGGAGCCCTACGTTCAGCCACGTCCGCTCCAGGAA
CCGGCTTTGAACATCATGAACGCGCTGGCAGGACTCAAGAACCTAGCCAA
GGGACAGTATGGTGGCCAAATGCCAACTAGCGAGGAAAGTCGCCGGCAGG
AGCGTGGCTTCGAGGAATCACTGCACTATGTGCTTACCTATGGGAGTCAC
GCCGATATTCTCACCTTTCTGATGCGCCGCGAAGAGCTGCGGGCAGCACT
TCGCTACTGGCAGCACCAGCAGTTGGACGCGGATCTCTTTATCCATCACA
TATTCTACCCGCAGCTGGCCAACGGCGGCCTAAACGTTTTGATGGACGAA
CTGCAGCAGCTGGACGACGCTCAATTCACTGCCTGGCGTCTGCCACTACT
GCAGACCTGTCGACATCTGGAGCAGCAGCAGCAACTCAGTTCGCTGTACC
AACTGCAGCTGCTGCTAAAGGATCCCATCCGGGCCAGCATGACGTGCGTG
AAGTTCTACGCCTTGCAGTGCGAGAACTTTCAGAAGCTGCATGCCAACGC
CCAGCACTTGCTGTCTGCCCTCAGGCATCTTCAGGGTGAACTGGATATGG
CGGAATGGGAGCACCTGCAGCGGCAGCAGGCTCGCAGAAACAGCGTGAGT
AGCACAGCAAGCGTTCGAGGTGCCTGCTTCGCCATGCAAATGGATGCCAG
GGCTCTCAATGGACACATCAATACCATCCGGCGACAGTTGGAAGTGGCTA
AGTTCTTGGACAAGTGTGAGCGAGAACAGCCGCCAGATGAGCCACTACGA
ACTATACAAACTCTGAAGCAGATTCGACTAGAGTCCAGTCGAGGAACTCT
ACCTACTCTGTTCGAAGGCGCCGCAGATCGGATACAAATTTGCATTCTGA
TCCTCATGTGCGGTAAGAACATAGACGAAGGTTTTGGCCTGGCTTACGGC
ATTATGCAGGACTTCAAGCTGGCTGCACTTAAGGTGTTTGGAGCCACTGC
TAAGTACCTGTCGAGAAATCAGCGCTTGGGTGAGGTAGAGCGTCTGCTGG
ACTGCATAGGAAGCAACAACGGCGGAGACATTTCCACGGAGTCCGATGAA
ATACTCTCGATTGCCATTAATGCTGCTGTGCACAGCAGTGCGCCGGAGAC
GAAACAGATGCTGGATCGGTTGATCAAACGCATCGGCAGCGTGGAGCTAC
GAGTCTCCTCCTACATCTACATTGGGCAGCTTAAATCCGCCTATCTGCTG
GCCAACAAGCACGATCGATTGGCGGATATCCGGCGAATCCTGCGGCAGGC
GGAGCTTACCGGTCAGGTTCACATCAAGAAACTGTGCGATATGAAGCTCC
AGCTAAGCGCCGCGCCAACGCCTCTGGCAAGCTTTCTAGACCAT

BO10677.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5270-RB 6732 CG5270-PB 3820..6729 17..2926 14550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5270-RB 7465 CG5270-RB 4123..7032 17..2926 14550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11427792..11428863 1300..2371 5360 100 Plus
3R 32079331 3R 11426394..11427422 17..1045 5145 100 Plus
3R 32079331 3R 11429109..11429536 2499..2926 2140 100 Plus
3R 32079331 3R 11427480..11427738 1043..1301 1295 100 Plus
3R 32079331 3R 11428923..11429052 2370..2499 650 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:09:33 has no hits.

BO10677.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:10 Download gff for BO10677.complete
Subject Subject Range Query Range Percent Splice Strand
CG5270-RA 1..2913 17..2929 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:31 Download gff for BO10677.complete
Subject Subject Range Query Range Percent Splice Strand
CG5270-RA 35..2944 17..2926 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:56 Download gff for BO10677.complete
Subject Subject Range Query Range Percent Splice Strand
CG5270-RB 4123..7032 17..2928 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:10 Download gff for BO10677.complete
Subject Subject Range Query Range Percent Splice Strand
CG5270-RA 35..2944 17..2926 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:40:03 Download gff for BO10677.complete
Subject Subject Range Query Range Percent Splice Strand
CG5270-RB 4123..7032 17..2928 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:40:03 Download gff for BO10677.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11427480..11427738 1043..1301 100 -> Plus
3R 11426394..11427419 17..1042 100 -> Plus
3R 11427794..11428863 1302..2371 100 -> Plus
3R 11428925..11429052 2372..2499 100 -> Plus
3R 11429110..11429536 2500..2928 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:56 Download gff for BO10677.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7252116..7253141 17..1042 100 -> Plus
arm_3R 7253202..7253460 1043..1301 100 -> Plus
arm_3R 7253516..7254585 1302..2371 100 -> Plus
arm_3R 7254647..7254774 2372..2499 100 -> Plus
arm_3R 7254832..7255258 2500..2928 99   Plus

BO10677.pep Sequence

Translation from 16 to 2944

> BO10677.pep
MDTNERSPFWKLIRHPLLIVEQLVMNARFELLGKLLDAARSKLLKERPLG
PCPYCFDKTGHVYDVQSSAGLGSGAGETPAKIRFQLGQTTSEAFILLNFN
SYQQDHFVGQDCLDLLLRIYASKALDYHVANVRAASEPSSLGTDVHNSLD
SLCGAFVMPKQAPNRQQWTRDEEASHCMCCRRAAFTMLMRRHHCRRCGRV
VCYACSTHRIRIPELYDELEVRICNDCAACSTPAKDQGDGTSSERSAISG
QVSKSSGRSDSCKWQLSGIITHDKLLREEFSYEHAPSVALSLSILRNHVE
QRSCVDLLLFHCRKLEKLIVPNPEVDYGLVAKMINCLAFAAKVRGAPGEL
ENIREHSEIIMAVVQQGCESLIPTGPLNNHNLRKLADALVEAEHWTLALE
VHLKCGFATTGVMAAHGLACLRAGCYDAAREKFAHCMTRLSSEQLNSSIC
KNIFGVASTEAVLLPRKRPQRGPALLQEILQLIAAIPQVQTQPETLHRAS
LIRSSNTSLASLFTRRREPYVQPRPLQEPALNIMNALAGLKNLAKGQYGG
QMPTSEESRRQERGFEESLHYVLTYGSHADILTFLMRREELRAALRYWQH
QQLDADLFIHHIFYPQLANGGLNVLMDELQQLDDAQFTAWRLPLLQTCRH
LEQQQQLSSLYQLQLLLKDPIRASMTCVKFYALQCENFQKLHANAQHLLS
ALRHLQGELDMAEWEHLQRQQARRNSVSSTASVRGACFAMQMDARALNGH
INTIRRQLEVAKFLDKCEREQPPDEPLRTIQTLKQIRLESSRGTLPTLFE
GAADRIQICILILMCGKNIDEGFGLAYGIMQDFKLAALKVFGATAKYLSR
NQRLGEVERLLDCIGSNNGGDISTESDEILSIAINAAVHSSAPETKQMLD
RLIKRIGSVELRVSSYIYIGQLKSAYLLANKHDRLADIRRILRQAELTGQ
VHIKKLCDMKLQLSAAPTPLASFLDH

BO10677.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5270-PB 2243 CG5270-PB 1274..2243 1..970 5024 100 Plus
rush-PB 316 CG14782-PB 149..207 168..227 158 43.3 Plus
rush-PA 316 CG14782-PA 149..207 168..227 158 43.3 Plus