Clone Sequence Records
BO10678.3prime Sequence
876 bp (832 high quality bases) assembled on 2006-04-19
> BO10678.3prime
ATGGTCTAGAAAGCTTGCACCGAAGATATTGTCATAGATTTTGTGCCAGA
TACTGCTGCGCCGGAAGAGGGCGTTGGCGTTGCCCTCCTGAACGAACAGT
TGGTACCGCTTGAGGGTCTGCGGGTCGCTGGGTCCCCAGTTGGGCAGTGG
CTCAAAGGCTTTGCGGATGCGGGCCCAGAGACCCAAGTGCGAGGGCTGCT
TCCGCACGGCGGGAATGGCCCAGAAGAGCACCTGACCCACGCCAAAGGCA
CTGAGGCACCAACCGAAAACGTAAACACCCGATTGGTAGGTGTAATCCTT
GTACTTGAGGGGCTCGTACAGAACCAAGGTGTAGATGAGAATGGTGAGCA
TTAGCAGAGGAGTGACGACCGCCCAGCAGATGCGATAGTACAGCGAAGTC
TTGATGCCAATCATGAACTCCACGTCACGGCAGAGTCGCTTCACACCGTA
GATCCAGGCAATGGTCACCAGCTCGAAGATGGCCAGCACCAGGGCCACGA
ACGTGACGCCAAAGTAGTCGACCAGGTTGAGCAGGAACTGGCCACCGGGT
GTGATGTACAGAAGGCCCAGAAAGTAGCCTACAATGGCTATACCAACCAC
CACAGTCCAGTTCTTCAGGTGTCCGAACTGATCCTTGATCACGGTGGACA
TGCAGGAGGCCATGCCCACATTGCTGCCGATGCCCAGGACGAAGAGCATG
AGGAAGAACAGCACGGAGAATAGCTGCGGCAGCCACTTAAACTTGGCAAT
GGCGTCCGGGTAAGATATGAAAGCCAGGCCCGGACCTCCATTGACCACAC
TAGCGATGTCGGTGGTGTTGTTCTCGTACGCCAGGGTGCCCAGAATCCCG
AAGATAATCACACCGGACAGTAGGGA
BO10678.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1698-PA | 1965 | CG1698-RA | 1105..1962 | 876..19 | 4265 | 99.8 | Minus |
CG15279-PB | 1920 | CG15279-RB | 1225..1256 | 720..689 | 135 | 96.8 | Minus |
CG15279-PA | 1920 | CG15279-RA | 1225..1256 | 720..689 | 135 | 96.8 | Minus |
CG3252-PA | 1926 | CG3252-RA | 1193..1244 | 731..680 | 135 | 90.3 | Minus |
CG15279-PC | 2220 | CG15279-RC | 1525..1556 | 720..689 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:01:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1698-RB | 2246 | CG1698-RB | 1354..2211 | 876..19 | 4275 | 99.9 | Minus |
CG1698-RA | 4106 | CG1698-RA | 3214..4071 | 876..19 | 4275 | 99.9 | Minus |
CG4476-RB | 2400 | CG4476-RB | 1385..1625 | 864..624 | 335 | 76.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:01:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9797049..9797655 | 876..270 | 3020 | 99.8 | Minus |
2R | 25286936 | 2R | 9797720..9797971 | 270..19 | 1260 | 100 | Minus |
3L | 28110227 | 3L | 9214045..9214285 | 864..624 | 335 | 75.9 | Minus |
2R | 25286936 | 2R | 12299643..12299818 | 680..855 | 235 | 75.6 | Plus |
2L | 23513712 | 2L | 14845858..14845982 | 652..776 | 235 | 79.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:01:04 has no hits.
BO10678.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:04 Download gff for
BO10678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1698-PA | 1106..1965 | 18..875 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:57 Download gff for
BO10678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1698-PA | 1106..1965 | 18..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:54:25 Download gff for
BO10678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1698-RA | 3215..4078 | 10..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:55 Download gff for
BO10678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1698-RA | 3215..4078 | 10..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:55 Download gff for
BO10678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9797050..9797655 | 270..875 | 99 | -> | Minus |
2R | 9797721..9797978 | 10..269 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:54:25 Download gff for
BO10678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5684555..5685160 | 270..875 | 99 | -> | Minus |
arm_2R | 5685226..5685483 | 10..269 | 98 | | Minus |
BO10678.5prime Sequence
884 bp (787 high quality bases) assembled on 2006-04-19
> BO10678.5prime
GAAGTTATCAGTCGACATGGAAACCACAATCAATAACAACAACAATGACA
ACGGATATATGAACCAGGCGTATGTGGGTTCATTGAATGCCTCAACTATC
TCAATACCAGGGGCATACAAGCCCAATGAGTCATCCAATGGCAAGAAGAC
GCTCTCTGAAGGATCAGGCTCAGCTCCACCACCAGGACATGGAGATAGCC
CGTCTGGAGTGGAGGCTGGTCAGCCGGGTAAAAAGCGAGATAGTTGGAAC
AACGACATCGAGTTCCTCATGTCCTGCATCGCACTGAGCGTGGGTCTGGG
CAATGTGTGGAGGTTTCCCTTTACCGCACTGGAGAACGGAGGAGGAGCGT
TCGTGATACCCTACCTGATCGTCCTGATTCTAGTGGGCAAGCCCGTGTAC
TACTTGGAAATGCTGCTCGGCCAGTTCTCGAGTCGCGGCAGTGTGAAGGT
CTACGACTTTTCACCCATCATGAGAGGCATTGGATATGGACAAGTCCTGG
CCACGGGCATCGTTACCACCTACTACGCCACGTTAATGGCGCTCACCCTA
CGCTACTTCGTGGACTCCTTCTACCCGACCTTGCCGTGGAGCTACTGCCG
CGAGGAGTGGGGTACAGAATGCCTGGACTCGGGACCGCAGGAGGCCAGCA
GAGCCACCAGTTTGGCAGGGTCGGGAGTGCGAACCACCTCGGCGGAGTTC
TATTTCACGAACATCATTCTGCGCGAGAAGGCGAGCATCGATGATGGCAT
CGGATATCCCAGCTGGAGCCTGGCGCTGGCACTGGCTGTGGCCTGGATCG
TCATCGCGGGGATTATGTTCAAGGGTGTGAAGAAGTCGGGCAAAGCCTCC
TACTTCCTCGCCCTCTTTTCCTACGTGGTGATGC
BO10678.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1698-PA | 1965 | CG1698-RA | 1..868 | 17..884 | 4240 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:29:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1698-RB | 2246 | CG1698-RB | 248..1117 | 15..884 | 4290 | 99.5 | Plus |
CG1698-RA | 4106 | CG1698-RA | 2108..2977 | 15..884 | 4290 | 99.5 | Plus |
CG4476-RB | 2400 | CG4476-RB | 521..874 | 260..613 | 480 | 76.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:29:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9795433..9795895 | 15..477 | 2315 | 100 | Plus |
2R | 25286936 | 2R | 9796296..9796530 | 475..709 | 1175 | 100 | Plus |
2R | 25286936 | 2R | 9796585..9796760 | 709..884 | 820 | 97.7 | Plus |
3L | 28110227 | 3L | 9212984..9213201 | 260..477 | 475 | 81.2 | Plus |
2L | 23513712 | 2L | 14848711..14848890 | 439..260 | 240 | 75.6 | Minus |
Blast to na_te.dros performed on 2015-02-04 04:29:29 has no hits.
BO10678.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:05 Download gff for
BO10678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1698-PA | 1..868 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:58 Download gff for
BO10678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1698-PA | 1..868 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:02:15 Download gff for
BO10678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1698-RA | 2108..2977 | 15..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:36:59 Download gff for
BO10678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1698-RA | 2108..2977 | 15..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:36:59 Download gff for
BO10678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9796585..9796760 | 709..884 | 97 | | Plus |
2R | 9795433..9795894 | 15..476 | 100 | -> | Plus |
2R | 9796298..9796529 | 477..708 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:02:15 Download gff for
BO10678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5682938..5683399 | 15..476 | 100 | -> | Plus |
arm_2R | 5683803..5684034 | 477..708 | 100 | -> | Plus |
arm_2R | 5684090..5684265 | 709..884 | 97 | | Plus |
BO10678.complete Sequence
1996 bp assembled on 2008-01-16
GenBank Submission: FJ631842
> BO10678.complete
GAAGTTATCAGTCGACATGGAAACCACAATCAATAACAACAACAATGACA
ACGGATATATGAACCAGGCGTATGTGGGTTCATTGAATGCCTCAACTATC
TCAATACCAGGGGCATACAAGCCCAATGAGTCATCCAATGGCAAGAAGAC
GCTCTCTGAAGGATCAGGCTCAGCTCCACCACCAGGACATGGAGATAGCC
CGTCTGGAGTGGAGGCTGGTCAGCCGGGTAAAAAGCGAGATAGTTGGAAC
AACGACATCGAGTTCCTCATGTCCTGCATCGCACTGAGCGTGGGTCTGGG
CAATGTGTGGAGGTTTCCCTTTACCGCACTGGAGAACGGAGGAGGAGCGT
TCGTGATACCCTACCTGATCGTCCTGATTCTAGTGGGCAAGCCCGTGTAC
TACTTGGAAATGCTGCTCGGCCAGTTCTCGAGTCGCGGCAGTGTGAAGGT
CTACGACTTTTCACCCATCATGAGAGGCATTGGATATGGACAAGTCCTGG
CCACGGGCATCGTTACCACCTACTACGCCACGTTAATGGCGCTCACCCTA
CGCTACTTCGTGGACTCCTTCTACCCGACCTTGCCGTGGAGCTACTGCCG
CGAGGAGTGGGGTACAGAATGCCTGGACTCGGGACCGCAGGAGGCCAGCA
GAGCCACCAGTTTGGCAGGGTCGGGAGTGCGAACCACCTCGGCGGAGTTC
TATTTCACGAACATCATTCTGCGCGAGAAGGCGAGCATCGATGATGGCAT
CGGATATCCCAGCTGGAGCCTGGCGCTGGCACTGGCTGTGGCCTGGATCG
TCATCGCGGGGATTATGTTCAAGGGTGTGAAGAGTTCGGGCAAGGCCTCC
TACTTCCTCGCCCTCTTTCCCTACGTGGTGATGCTGGTGCTCTTGGTGCG
GGCACTCACCTTGCCGGGCGCCTTCGACGGCGTGCTGTACTTCCTGCGGC
CGCAATGGCACAAGCTCCTGGAACCGCAGGTCTGGTACGCCGCCGTCACC
CAGGTGTTCTTCTCACTGGCCATCTGCTTCGGGAACATCATCATGTACGC
CTCGTACAACCGCTTCGGCCACAACATTTACAGGGATGCCAATATCGTGA
CCACGCTGGACACCTTCACCTCCCTACTGTCCGGTGTGATTATCTTCGGG
ATTCTGGGCAACCTGGCGTACGAGAACAACACCACCGACATCGCTAGTGT
GGTCAATGGAGGTCCGGGCCTGGCTTTCATATCTTACCCGGACGCCATTG
CCAAGTTTAAGTGGCTGCCGCAGCTATTCTCCGTGCTGTTCTTCCTCATG
CTCTTCGTCCTGGGCATCGGCAGCAATGTGGGCATGGCCTCCTGCATGTC
CACCGTGATCAAGGATCAGTTCGGACACCTGAAGAACTGGACTGTGGTGG
TTGGTATAGCCATTGTAGGCTACTTTCTGGGCCTTCTGTACATCACACCC
GGTGGCCAGTTCCTGCTCAACCTGGTCGACTACTTTGGCGTCACGTTCGT
GGCCCTGGTGCTGGCCATCTTCGAGCTGGTGACCATTGCCTGGATCTACG
GTGTGAAGCGACTCTGCCGTGACGTGGAGTTCATGATTGGCATCAAGACT
TCGCTGTACTATCGCATCTGCTGGGCGGTCGTCACTCCTCTGCTAATGCT
CACCATTCTCATCTACACCTTGGTTCTGTACGAGCCCCTCAAGTACAAGG
ATTACACCTACCAATCGGGTGTTTACGTTTTCGGTTGGTGCCTCAGTGCC
TTTGGCGTGGGTCAGGTGCTCTTCTGGGCCATTCCCGCCGTGCGGAAGCA
GCCCTCGCACTTGGGTCTCTGGGCCCGCATCCGCAAAGCCTTTGAGCCAC
TGCCCAACTGGGGACCCAGCGACCCGCAGACCCTCAAGCGGTACCAACTG
TTCGTTCAGGAGGGCAACGCCAACGCCCTCTTCCGGCGCAGCAGTATCTG
GCACAAAATCTATGACAATATCTTCGGTGCAAGCTTTCTAGACCAT
BO10678.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1698-RB | 1965 | CG1698-PB | 1..1962 | 17..1978 | 9795 | 99.9 | Plus |
CG1698-RA | 1965 | CG1698-PA | 1..1962 | 17..1978 | 9795 | 99.9 | Plus |
CG4476-RB | 1890 | CG4476-PB | 729..1279 | 823..1373 | 895 | 77.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1698-RB | 2246 | CG1698-RB | 248..2211 | 15..1978 | 9805 | 99.9 | Plus |
CG1698-RA | 4106 | CG1698-RA | 2108..4071 | 15..1978 | 9805 | 99.9 | Plus |
CG4476-RB | 2400 | CG4476-RB | 1075..1625 | 823..1373 | 895 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:01:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9797009..9797655 | 1081..1727 | 3235 | 100 | Plus |
2R | 25286936 | 2R | 9795433..9795895 | 15..477 | 2315 | 100 | Plus |
2R | 25286936 | 2R | 9796585..9796960 | 709..1084 | 1865 | 99.7 | Plus |
2R | 25286936 | 2R | 9797720..9797971 | 1727..1978 | 1260 | 100 | Plus |
2R | 25286936 | 2R | 9796296..9796530 | 475..709 | 1175 | 100 | Plus |
3L | 28110227 | 3L | 9213735..9214285 | 823..1373 | 895 | 77.5 | Plus |
3L | 28110227 | 3L | 9212984..9213201 | 260..477 | 475 | 81.2 | Plus |
2L | 23513712 | 2L | 14845858..14846376 | 1345..827 | 360 | 71.3 | Minus |
2R | 25286936 | 2R | 12299963..12300183 | 1053..833 | 280 | 75.1 | Minus |
X | 23542271 | X | 5406459..5406949 | 1317..827 | 265 | 70.3 | Minus |
2R | 25286936 | 2R | 12299643..12299818 | 1317..1142 | 250 | 76.1 | Minus |
2L | 23513712 | 2L | 14848711..14848890 | 439..260 | 240 | 75.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:01:40 has no hits.
BO10678.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:31 Download gff for
BO10678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1698-RA | 1..1965 | 17..1979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:04 Download gff for
BO10678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1698-RA | 2093..4054 | 17..1980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:39 Download gff for
BO10678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1698-RA | 2110..4071 | 17..1980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:56:31 Download gff for
BO10678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1698-RA | 2091..4061 | 15..1987 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:41 Download gff for
BO10678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1698-RA | 2110..4071 | 17..1980 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:41 Download gff for
BO10678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9795435..9795894 | 17..476 | 100 | -> | Plus |
2R | 9796298..9796529 | 477..708 | 100 | -> | Plus |
2R | 9796585..9796959 | 709..1083 | 99 | -> | Plus |
2R | 9797012..9797655 | 1084..1727 | 100 | -> | Plus |
2R | 9797721..9797971 | 1728..1980 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:39 Download gff for
BO10678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5683803..5684034 | 477..708 | 100 | -> | Plus |
arm_2R | 5682940..5683399 | 17..476 | 100 | -> | Plus |
arm_2R | 5684090..5684464 | 709..1083 | 99 | -> | Plus |
arm_2R | 5684517..5685160 | 1084..1727 | 100 | -> | Plus |
arm_2R | 5685226..5685476 | 1728..1980 | 99 | | Plus |
BO10678.pep Sequence
Translation from 16 to 1996
> BO10678.pep
METTINNNNNDNGYMNQAYVGSLNASTISIPGAYKPNESSNGKKTLSEGS
GSAPPPGHGDSPSGVEAGQPGKKRDSWNNDIEFLMSCIALSVGLGNVWRF
PFTALENGGGAFVIPYLIVLILVGKPVYYLEMLLGQFSSRGSVKVYDFSP
IMRGIGYGQVLATGIVTTYYATLMALTLRYFVDSFYPTLPWSYCREEWGT
ECLDSGPQEASRATSLAGSGVRTTSAEFYFTNIILREKASIDDGIGYPSW
SLALALAVAWIVIAGIMFKGVKSSGKASYFLALFPYVVMLVLLVRALTLP
GAFDGVLYFLRPQWHKLLEPQVWYAAVTQVFFSLAICFGNIIMYASYNRF
GHNIYRDANIVTTLDTFTSLLSGVIIFGILGNLAYENNTTDIASVVNGGP
GLAFISYPDAIAKFKWLPQLFSVLFFLMLFVLGIGSNVGMASCMSTVIKD
QFGHLKNWTVVVGIAIVGYFLGLLYITPGGQFLLNLVDYFGVTFVALVLA
IFELVTIAWIYGVKRLCRDVEFMIGIKTSLYYRICWAVVTPLLMLTILIY
TLVLYEPLKYKDYTYQSGVYVFGWCLSAFGVGQVLFWAIPAVRKQPSHLG
LWARIRKAFEPLPNWGPSDPQTLKRYQLFVQEGNANALFRRSSIWHKIYD
NIFGASFLDH
BO10678.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1698-PB | 654 | CG1698-PB | 1..654 | 1..654 | 3444 | 100 | Plus |
CG1698-PA | 654 | CG1698-PA | 1..654 | 1..654 | 3444 | 100 | Plus |
CG4476-PB | 629 | CG4476-PB | 49..629 | 72..654 | 1981 | 63.3 | Plus |
CG15279-PA | 639 | CG15279-PA | 17..639 | 41..654 | 1854 | 56 | Plus |
CG15279-PB | 639 | CG15279-PB | 17..639 | 41..654 | 1854 | 56 | Plus |