Clone BO10678 Report

Search the DGRC for BO10678

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:106
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG1698-RA
Protein status:BO10678.pep:
Sequenced Size:1996

Clone Sequence Records

BO10678.3prime Sequence

876 bp (832 high quality bases) assembled on 2006-04-19

> BO10678.3prime
ATGGTCTAGAAAGCTTGCACCGAAGATATTGTCATAGATTTTGTGCCAGA
TACTGCTGCGCCGGAAGAGGGCGTTGGCGTTGCCCTCCTGAACGAACAGT
TGGTACCGCTTGAGGGTCTGCGGGTCGCTGGGTCCCCAGTTGGGCAGTGG
CTCAAAGGCTTTGCGGATGCGGGCCCAGAGACCCAAGTGCGAGGGCTGCT
TCCGCACGGCGGGAATGGCCCAGAAGAGCACCTGACCCACGCCAAAGGCA
CTGAGGCACCAACCGAAAACGTAAACACCCGATTGGTAGGTGTAATCCTT
GTACTTGAGGGGCTCGTACAGAACCAAGGTGTAGATGAGAATGGTGAGCA
TTAGCAGAGGAGTGACGACCGCCCAGCAGATGCGATAGTACAGCGAAGTC
TTGATGCCAATCATGAACTCCACGTCACGGCAGAGTCGCTTCACACCGTA
GATCCAGGCAATGGTCACCAGCTCGAAGATGGCCAGCACCAGGGCCACGA
ACGTGACGCCAAAGTAGTCGACCAGGTTGAGCAGGAACTGGCCACCGGGT
GTGATGTACAGAAGGCCCAGAAAGTAGCCTACAATGGCTATACCAACCAC
CACAGTCCAGTTCTTCAGGTGTCCGAACTGATCCTTGATCACGGTGGACA
TGCAGGAGGCCATGCCCACATTGCTGCCGATGCCCAGGACGAAGAGCATG
AGGAAGAACAGCACGGAGAATAGCTGCGGCAGCCACTTAAACTTGGCAAT
GGCGTCCGGGTAAGATATGAAAGCCAGGCCCGGACCTCCATTGACCACAC
TAGCGATGTCGGTGGTGTTGTTCTCGTACGCCAGGGTGCCCAGAATCCCG
AAGATAATCACACCGGACAGTAGGGA

BO10678.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG1698-PA 1965 CG1698-RA 1105..1962 876..19 4265 99.8 Minus
CG15279-PB 1920 CG15279-RB 1225..1256 720..689 135 96.8 Minus
CG15279-PA 1920 CG15279-RA 1225..1256 720..689 135 96.8 Minus
CG3252-PA 1926 CG3252-RA 1193..1244 731..680 135 90.3 Minus
CG15279-PC 2220 CG15279-RC 1525..1556 720..689 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1698-RB 2246 CG1698-RB 1354..2211 876..19 4275 99.9 Minus
CG1698-RA 4106 CG1698-RA 3214..4071 876..19 4275 99.9 Minus
CG4476-RB 2400 CG4476-RB 1385..1625 864..624 335 76.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9797049..9797655 876..270 3020 99.8 Minus
2R 25286936 2R 9797720..9797971 270..19 1260 100 Minus
3L 28110227 3L 9214045..9214285 864..624 335 75.9 Minus
2R 25286936 2R 12299643..12299818 680..855 235 75.6 Plus
2L 23513712 2L 14845858..14845982 652..776 235 79.2 Plus
Blast to na_te.dros performed on 2015-02-10 22:01:04 has no hits.

BO10678.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:04 Download gff for BO10678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1698-PA 1106..1965 18..875 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:57 Download gff for BO10678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1698-PA 1106..1965 18..875 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:54:25 Download gff for BO10678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1698-RA 3215..4078 10..875 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:55 Download gff for BO10678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1698-RA 3215..4078 10..875 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:55 Download gff for BO10678.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9797050..9797655 270..875 99 -> Minus
2R 9797721..9797978 10..269 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:54:25 Download gff for BO10678.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5684555..5685160 270..875 99 -> Minus
arm_2R 5685226..5685483 10..269 98   Minus

BO10678.5prime Sequence

884 bp (787 high quality bases) assembled on 2006-04-19

> BO10678.5prime
GAAGTTATCAGTCGACATGGAAACCACAATCAATAACAACAACAATGACA
ACGGATATATGAACCAGGCGTATGTGGGTTCATTGAATGCCTCAACTATC
TCAATACCAGGGGCATACAAGCCCAATGAGTCATCCAATGGCAAGAAGAC
GCTCTCTGAAGGATCAGGCTCAGCTCCACCACCAGGACATGGAGATAGCC
CGTCTGGAGTGGAGGCTGGTCAGCCGGGTAAAAAGCGAGATAGTTGGAAC
AACGACATCGAGTTCCTCATGTCCTGCATCGCACTGAGCGTGGGTCTGGG
CAATGTGTGGAGGTTTCCCTTTACCGCACTGGAGAACGGAGGAGGAGCGT
TCGTGATACCCTACCTGATCGTCCTGATTCTAGTGGGCAAGCCCGTGTAC
TACTTGGAAATGCTGCTCGGCCAGTTCTCGAGTCGCGGCAGTGTGAAGGT
CTACGACTTTTCACCCATCATGAGAGGCATTGGATATGGACAAGTCCTGG
CCACGGGCATCGTTACCACCTACTACGCCACGTTAATGGCGCTCACCCTA
CGCTACTTCGTGGACTCCTTCTACCCGACCTTGCCGTGGAGCTACTGCCG
CGAGGAGTGGGGTACAGAATGCCTGGACTCGGGACCGCAGGAGGCCAGCA
GAGCCACCAGTTTGGCAGGGTCGGGAGTGCGAACCACCTCGGCGGAGTTC
TATTTCACGAACATCATTCTGCGCGAGAAGGCGAGCATCGATGATGGCAT
CGGATATCCCAGCTGGAGCCTGGCGCTGGCACTGGCTGTGGCCTGGATCG
TCATCGCGGGGATTATGTTCAAGGGTGTGAAGAAGTCGGGCAAAGCCTCC
TACTTCCTCGCCCTCTTTTCCTACGTGGTGATGC

BO10678.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1698-PA 1965 CG1698-RA 1..868 17..884 4240 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1698-RB 2246 CG1698-RB 248..1117 15..884 4290 99.5 Plus
CG1698-RA 4106 CG1698-RA 2108..2977 15..884 4290 99.5 Plus
CG4476-RB 2400 CG4476-RB 521..874 260..613 480 76.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9795433..9795895 15..477 2315 100 Plus
2R 25286936 2R 9796296..9796530 475..709 1175 100 Plus
2R 25286936 2R 9796585..9796760 709..884 820 97.7 Plus
3L 28110227 3L 9212984..9213201 260..477 475 81.2 Plus
2L 23513712 2L 14848711..14848890 439..260 240 75.6 Minus
Blast to na_te.dros performed on 2015-02-04 04:29:29 has no hits.

BO10678.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:05 Download gff for BO10678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1698-PA 1..868 17..884 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:01:58 Download gff for BO10678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1698-PA 1..868 17..884 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:02:15 Download gff for BO10678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1698-RA 2108..2977 15..884 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:36:59 Download gff for BO10678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1698-RA 2108..2977 15..884 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:36:59 Download gff for BO10678.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9796585..9796760 709..884 97   Plus
2R 9795433..9795894 15..476 100 -> Plus
2R 9796298..9796529 477..708 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:02:15 Download gff for BO10678.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5682938..5683399 15..476 100 -> Plus
arm_2R 5683803..5684034 477..708 100 -> Plus
arm_2R 5684090..5684265 709..884 97   Plus

BO10678.complete Sequence

1996 bp assembled on 2008-01-16

GenBank Submission: FJ631842

> BO10678.complete
GAAGTTATCAGTCGACATGGAAACCACAATCAATAACAACAACAATGACA
ACGGATATATGAACCAGGCGTATGTGGGTTCATTGAATGCCTCAACTATC
TCAATACCAGGGGCATACAAGCCCAATGAGTCATCCAATGGCAAGAAGAC
GCTCTCTGAAGGATCAGGCTCAGCTCCACCACCAGGACATGGAGATAGCC
CGTCTGGAGTGGAGGCTGGTCAGCCGGGTAAAAAGCGAGATAGTTGGAAC
AACGACATCGAGTTCCTCATGTCCTGCATCGCACTGAGCGTGGGTCTGGG
CAATGTGTGGAGGTTTCCCTTTACCGCACTGGAGAACGGAGGAGGAGCGT
TCGTGATACCCTACCTGATCGTCCTGATTCTAGTGGGCAAGCCCGTGTAC
TACTTGGAAATGCTGCTCGGCCAGTTCTCGAGTCGCGGCAGTGTGAAGGT
CTACGACTTTTCACCCATCATGAGAGGCATTGGATATGGACAAGTCCTGG
CCACGGGCATCGTTACCACCTACTACGCCACGTTAATGGCGCTCACCCTA
CGCTACTTCGTGGACTCCTTCTACCCGACCTTGCCGTGGAGCTACTGCCG
CGAGGAGTGGGGTACAGAATGCCTGGACTCGGGACCGCAGGAGGCCAGCA
GAGCCACCAGTTTGGCAGGGTCGGGAGTGCGAACCACCTCGGCGGAGTTC
TATTTCACGAACATCATTCTGCGCGAGAAGGCGAGCATCGATGATGGCAT
CGGATATCCCAGCTGGAGCCTGGCGCTGGCACTGGCTGTGGCCTGGATCG
TCATCGCGGGGATTATGTTCAAGGGTGTGAAGAGTTCGGGCAAGGCCTCC
TACTTCCTCGCCCTCTTTCCCTACGTGGTGATGCTGGTGCTCTTGGTGCG
GGCACTCACCTTGCCGGGCGCCTTCGACGGCGTGCTGTACTTCCTGCGGC
CGCAATGGCACAAGCTCCTGGAACCGCAGGTCTGGTACGCCGCCGTCACC
CAGGTGTTCTTCTCACTGGCCATCTGCTTCGGGAACATCATCATGTACGC
CTCGTACAACCGCTTCGGCCACAACATTTACAGGGATGCCAATATCGTGA
CCACGCTGGACACCTTCACCTCCCTACTGTCCGGTGTGATTATCTTCGGG
ATTCTGGGCAACCTGGCGTACGAGAACAACACCACCGACATCGCTAGTGT
GGTCAATGGAGGTCCGGGCCTGGCTTTCATATCTTACCCGGACGCCATTG
CCAAGTTTAAGTGGCTGCCGCAGCTATTCTCCGTGCTGTTCTTCCTCATG
CTCTTCGTCCTGGGCATCGGCAGCAATGTGGGCATGGCCTCCTGCATGTC
CACCGTGATCAAGGATCAGTTCGGACACCTGAAGAACTGGACTGTGGTGG
TTGGTATAGCCATTGTAGGCTACTTTCTGGGCCTTCTGTACATCACACCC
GGTGGCCAGTTCCTGCTCAACCTGGTCGACTACTTTGGCGTCACGTTCGT
GGCCCTGGTGCTGGCCATCTTCGAGCTGGTGACCATTGCCTGGATCTACG
GTGTGAAGCGACTCTGCCGTGACGTGGAGTTCATGATTGGCATCAAGACT
TCGCTGTACTATCGCATCTGCTGGGCGGTCGTCACTCCTCTGCTAATGCT
CACCATTCTCATCTACACCTTGGTTCTGTACGAGCCCCTCAAGTACAAGG
ATTACACCTACCAATCGGGTGTTTACGTTTTCGGTTGGTGCCTCAGTGCC
TTTGGCGTGGGTCAGGTGCTCTTCTGGGCCATTCCCGCCGTGCGGAAGCA
GCCCTCGCACTTGGGTCTCTGGGCCCGCATCCGCAAAGCCTTTGAGCCAC
TGCCCAACTGGGGACCCAGCGACCCGCAGACCCTCAAGCGGTACCAACTG
TTCGTTCAGGAGGGCAACGCCAACGCCCTCTTCCGGCGCAGCAGTATCTG
GCACAAAATCTATGACAATATCTTCGGTGCAAGCTTTCTAGACCAT

BO10678.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1698-RB 1965 CG1698-PB 1..1962 17..1978 9795 99.9 Plus
CG1698-RA 1965 CG1698-PA 1..1962 17..1978 9795 99.9 Plus
CG4476-RB 1890 CG4476-PB 729..1279 823..1373 895 77.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1698-RB 2246 CG1698-RB 248..2211 15..1978 9805 99.9 Plus
CG1698-RA 4106 CG1698-RA 2108..4071 15..1978 9805 99.9 Plus
CG4476-RB 2400 CG4476-RB 1075..1625 823..1373 895 77.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9797009..9797655 1081..1727 3235 100 Plus
2R 25286936 2R 9795433..9795895 15..477 2315 100 Plus
2R 25286936 2R 9796585..9796960 709..1084 1865 99.7 Plus
2R 25286936 2R 9797720..9797971 1727..1978 1260 100 Plus
2R 25286936 2R 9796296..9796530 475..709 1175 100 Plus
3L 28110227 3L 9213735..9214285 823..1373 895 77.5 Plus
3L 28110227 3L 9212984..9213201 260..477 475 81.2 Plus
2L 23513712 2L 14845858..14846376 1345..827 360 71.3 Minus
2R 25286936 2R 12299963..12300183 1053..833 280 75.1 Minus
X 23542271 X 5406459..5406949 1317..827 265 70.3 Minus
2R 25286936 2R 12299643..12299818 1317..1142 250 76.1 Minus
2L 23513712 2L 14848711..14848890 439..260 240 75.6 Minus
Blast to na_te.dros performed on 2014-11-27 14:01:40 has no hits.

BO10678.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:31 Download gff for BO10678.complete
Subject Subject Range Query Range Percent Splice Strand
CG1698-RA 1..1965 17..1979 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:04 Download gff for BO10678.complete
Subject Subject Range Query Range Percent Splice Strand
CG1698-RA 2093..4054 17..1980 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:39 Download gff for BO10678.complete
Subject Subject Range Query Range Percent Splice Strand
CG1698-RA 2110..4071 17..1980 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:56:31 Download gff for BO10678.complete
Subject Subject Range Query Range Percent Splice Strand
CG1698-RA 2091..4061 15..1987 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:41 Download gff for BO10678.complete
Subject Subject Range Query Range Percent Splice Strand
CG1698-RA 2110..4071 17..1980 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:41 Download gff for BO10678.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9795435..9795894 17..476 100 -> Plus
2R 9796298..9796529 477..708 100 -> Plus
2R 9796585..9796959 709..1083 99 -> Plus
2R 9797012..9797655 1084..1727 100 -> Plus
2R 9797721..9797971 1728..1980 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:39 Download gff for BO10678.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5683803..5684034 477..708 100 -> Plus
arm_2R 5682940..5683399 17..476 100 -> Plus
arm_2R 5684090..5684464 709..1083 99 -> Plus
arm_2R 5684517..5685160 1084..1727 100 -> Plus
arm_2R 5685226..5685476 1728..1980 99   Plus

BO10678.pep Sequence

Translation from 16 to 1996

> BO10678.pep
METTINNNNNDNGYMNQAYVGSLNASTISIPGAYKPNESSNGKKTLSEGS
GSAPPPGHGDSPSGVEAGQPGKKRDSWNNDIEFLMSCIALSVGLGNVWRF
PFTALENGGGAFVIPYLIVLILVGKPVYYLEMLLGQFSSRGSVKVYDFSP
IMRGIGYGQVLATGIVTTYYATLMALTLRYFVDSFYPTLPWSYCREEWGT
ECLDSGPQEASRATSLAGSGVRTTSAEFYFTNIILREKASIDDGIGYPSW
SLALALAVAWIVIAGIMFKGVKSSGKASYFLALFPYVVMLVLLVRALTLP
GAFDGVLYFLRPQWHKLLEPQVWYAAVTQVFFSLAICFGNIIMYASYNRF
GHNIYRDANIVTTLDTFTSLLSGVIIFGILGNLAYENNTTDIASVVNGGP
GLAFISYPDAIAKFKWLPQLFSVLFFLMLFVLGIGSNVGMASCMSTVIKD
QFGHLKNWTVVVGIAIVGYFLGLLYITPGGQFLLNLVDYFGVTFVALVLA
IFELVTIAWIYGVKRLCRDVEFMIGIKTSLYYRICWAVVTPLLMLTILIY
TLVLYEPLKYKDYTYQSGVYVFGWCLSAFGVGQVLFWAIPAVRKQPSHLG
LWARIRKAFEPLPNWGPSDPQTLKRYQLFVQEGNANALFRRSSIWHKIYD
NIFGASFLDH

BO10678.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG1698-PB 654 CG1698-PB 1..654 1..654 3444 100 Plus
CG1698-PA 654 CG1698-PA 1..654 1..654 3444 100 Plus
CG4476-PB 629 CG4476-PB 49..629 72..654 1981 63.3 Plus
CG15279-PA 639 CG15279-PA 17..639 41..654 1854 56 Plus
CG15279-PB 639 CG15279-PB 17..639 41..654 1854 56 Plus