Clone BO10680 Report

Search the DGRC for BO10680

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:106
Well:80
Vector:pDNR-Dual
Associated Gene/Transcriptmsl-2-RA
Protein status:BO10680.pep: validated full length
Sequenced Size:2353

Clone Sequence Records

BO10680.3prime Sequence

922 bp (841 high quality bases) assembled on 2006-04-19

> BO10680.3prime
ATGGTCTAGAAAGCTTGCCAAGTCATCCGAGCCCGACATGATCTCCTCGA
ACAGTGAATGGGCATTGTCAGTGGCCGATGATCTGTCGCCAGCGGCAGAA
TTGCTCCTGGATCCGCCACTGACAAGCTCATCCACCGTGTCGAGGGCCGA
GAAGTTGGCCCTTCCTCGGCGTGTTCGACTGGTCCTGAATTTCTTGGCCG
GTGGCTCGATGACTTCCCTGTCAGGAGCAGGAGGCGGTGGTGGCGAAAGT
GATGGAGCTGGTGGATTCGGCGGGTCAATTGTTGGCATTATATAAGCATA
CTGGGGAAGGGAACCGAAGCCATCGGTGTGCTGCAGCTGGACACGAATAG
TGAAGCCAACGGTGACCGGATCAAGGGGCTTGCTGCCCTGGAAGATATTG
AAGCCCTGGTACTCGCCTTTCTCATTCTGAACAAGCACCAAAGGATGCTG
GGATTGCTGCAAATTATTTAGCGGCACTAGGCTTATGGGGGCAGAAGAGT
CTGGCGGCGCCATACTGTTCTCCTCCTGCCTAGGCTCAGCTACCACCGGC
TCCTCCGACTGAGTCATCGGCTCTGGAACGTCCTTCGGCATTTCGAAATC
CTCCAAATCATCGTCCTCATCACTTTCAACGTAGTCCTCCTTGTGCGGAT
TCTTGCAGCACACGCAATGACACCCGGCACAGCTGTTGTAACTCTTGTAG
CAAGGACATCGGGAATTCCGGCAGGTGGTGAGGGTATTGCTCGAGCCGGA
GATACCGCAGCGGCACTTCGGCTTCGGAGGCTTCACCTTTTCCTCCTTGT
CCTTGCCCCGAATCCTGCGAAGAGCGCCCTTTCCAGATTGCACTTTAGTC
TTGACCTCAGACGGTACAGGCTCAATTTTTGCAGCTTGTGACGCTTTGAG
AGTACGGGTTCTCTTTCGCTTA

BO10680.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3241-PB 2322 msl-2-RB 1416..2319 922..19 4495 99.8 Minus
CG3241-PA 2322 msl-2-RA 1416..2319 922..19 4495 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
msl-2-RA 3843 CG3241-RA 1889..2792 922..19 4505 99.9 Minus
msl-2-RB 3710 CG3241-RB 1756..2659 922..19 4505 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3463706..3464224 404..922 2580 99.8 Plus
2L 23513712 2L 3463269..3463655 19..405 1935 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:21:59 has no hits.

BO10680.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:08 Download gff for BO10680.3prime
Subject Subject Range Query Range Percent Splice Strand
msl-2-PB 1417..2322 15..921 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:02:02 Download gff for BO10680.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3241-PA 1417..2322 15..921 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:54:47 Download gff for BO10680.3prime
Subject Subject Range Query Range Percent Splice Strand
msl-2-RB 1757..2664 13..921 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:08 Download gff for BO10680.3prime
Subject Subject Range Query Range Percent Splice Strand
msl-2-RB 1757..2664 13..921 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:08 Download gff for BO10680.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3463264..3463654 13..404 99 <- Plus
2L 3463707..3464223 405..921 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:54:47 Download gff for BO10680.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3463264..3463654 13..404 99 <- Plus
arm_2L 3463707..3464223 405..921 99   Plus

BO10680.5prime Sequence

966 bp (771 high quality bases) assembled on 2006-04-19

> BO10680.5prime
GAAGTTATCAGTCGACATGGCCCAGACGGCATACTTGAAGGTGACACGCA
TCGCGATGCGCTCCGCTTCGAATCTTTCCAAACGGCGGGTGGAGGAGCTG
AACTCCGGGCTCGGCGAGCTACGGCAGCTGCTGTCTTGCGTGGTCTGCTG
CCAGCTGCTGGTGGATCCCTACTCGCCCAAGGGCAAGCGGTGCCAGCACA
ACGTGTGCCGGCTGTGTCTGCGCGGTAAGAAGCATCTGTTTCCCAGCTGC
ACCCAGTGCGAGGGTTGCTCCGACTTCAAGACCTACGAGGAGAACCGTAT
GATGGCCGCCCAGCTACTGTGCTACAAGACGCTGTGCGTCCACCTGCTCC
ACTCGGCATTATTTGGTGAGCTGGCCGGGATGCGGCCCCAGGTGGCCAGG
GAGCTGGTGCCTCGCATCAAGCTGCCTCCCAAAACCACACAGGAGTTCAT
TCGCGAGGGCTCAAACATCTCCGACACTTTTGACATCTTTCTGCCCCAGC
CGGATTTGCCGTTCCTCAAGGACATGCCCACATCGCTGCCCGCAGAGACG
CCGCCTACGTCGGCGGTCACGACTCCGGAACTGCCCTATGATCACCACCT
CAACATCAGCGACATTGAGGCGGAGGCGGCGGCCACAGCGGAGCAGGGTC
ACTTCTCGCCGCTTCCCCTGCTGCCCACAGGATCTCGCATGGGCATGCTC
TCTCACGCCGGGCAAATAGTCATTGCCACCGAGAGCTCGGAGTCGGGCTT
CATGGACCAAGCGTGGACGGATCAGGTAGACCTGTCTGGCACGGTTTCGG
TGTCCAAATACACAAATAGCGGCAACAACTTTGCTGTCTCCTACGTGATG
CCCACTTCTGCGACCACGAAGTTCGATCCACAGGAACTGCAAATCGGGCA
GGTGGTGCAAATGGCGGACTCCACTCAGTTGGCTGTGCTGGCTGCCGTTG
AGGAGACCGTCGAGAC

BO10680.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3241-PB 2322 msl-2-RB 1..950 17..966 4725 99.8 Plus
CG3241-PA 2322 msl-2-RA 1..950 17..966 4725 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
msl-2-RA 3843 CG3241-RA 473..1423 16..966 4740 99.9 Plus
msl-2-RB 3710 CG3241-RB 340..1290 16..966 4740 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3464690..3465640 966..16 4740 99.9 Minus
Blast to na_te.dros performed on 2015-02-12 11:20:45 has no hits.

BO10680.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:09 Download gff for BO10680.5prime
Subject Subject Range Query Range Percent Splice Strand
msl-2-PB 1..950 17..966 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:02:04 Download gff for BO10680.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3241-PA 1..950 17..966 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:14:27 Download gff for BO10680.5prime
Subject Subject Range Query Range Percent Splice Strand
msl-2-RB 331..1290 6..966 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:36:40 Download gff for BO10680.5prime
Subject Subject Range Query Range Percent Splice Strand
msl-2-RB 331..1290 6..966 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:36:40 Download gff for BO10680.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3464690..3465644 13..966 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:14:27 Download gff for BO10680.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3464690..3465644 13..966 99 <- Minus

BO10680.complete Sequence

2353 bp (2353 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631843

> BO10680.complete
GAAGTTATCAGTCGACATGGCCCAGACGGCATACTTGAAGGTGACACGCA
TCGCGATGCGCTCCGCTTCGAATCTTTCCAAACGGCGGGTGGAGGAGCTG
AACTCCGGGCTCGGCGAGCTACGGCAGCTGCTGTCTTGCGTGGTCTGCTG
CCAGCTGCTGGTGGATCCCTACTCGCCCAAGGGCAAGCGGTGCCAGCACA
ACGTGTGCCGGCTGTGTCTGCGCGGTAAGAAGCATCTGTTTCCCAGCTGC
ACCCAGTGCGAGGGTTGCTCCGACTTCAAGACCTACGAGGAGAACCGTAT
GATGGCCGCCCAGCTACTGTGCTACAAGACGCTGTGCGTCCACCTGCTCC
ACTCGGCATTATTTGGTGAGCTGGCCGGGATGCGGCCCCAGGTGGCCAGG
GAGCTGGTGCCTCGCATCAAGCTGCCTCCCAAAACCACACAGGAGTTCAT
TCGCGAGGGCTCAAACATCTCCGACACTTTTGACATCTTTCTGCCCCAGC
CGGATTTGCCGTTCCTCAAGGACATGCCCACATCGCTGCCCGCAGAGACG
CCGCCTACGTCGGCGGTCACGACTCCGGAACTGCCCTATGATCACCACCT
CAACATCAGCGACATTGAGGCGGAGGCGGCGGCCACAGCGGAGCAGGGTC
ACTTCTCGCCGCTTCCCCTGCTGCCCACAGGATCTCGCATGGGCATGCTC
TCTCACGCCGGGCAAATAGTCATTGCCACCGAGAGCTCGGAGTCGGGCTT
CATGGACCAAGCGTGGACGGATCAGGTAGACCTGTCTGGCACGGTTTCGG
TGTCCAAATACACAAATAGCGGCAACAACTTTGCTGTCTCCTACGTGATG
CCCACTTCTGCGACCACGAAGTTCGATCCACAGGAACTGCAAATCGGCCA
GGTGGTGCAAATGGCGGACTCCACTCAGTTGGCTGTGCTGGCTGCCGTTG
AGGAGACCGTCGAGACGTCCACACAGTTGACTGTGCTCTCCACCACCGTT
GAAGAGACCGTTGAAACATCCACGCAGCTAGAAGTGCTTACCTCCGCTGA
GGAACCCAACGAAATCTCTGATCAATTGGCTAATCTGCAAGTTGAGGAAT
CTGATGAGGCTCTGGTTGAAGAGACCGTTGAAGAGGCCGAAGGGACCTCA
ATCCCGTCAGAGGTTGTAGCTGAGCACATGGAGGAGGATCAACACTTGGA
TGTGCACACTTCACAGTCACCTACACAAACCGAAATGGAGGAAGCAGTGG
AGGAGCATGTTGCCACAAAAACACAATTGGGTCATGTGCAAACAGAATTG
CAGGATGCGGAGTCGTTGCAGAAAGATTTTGAGGACGCAAAGGCAGCGGC
TGAAGAGGCGAAGGAGAAGGAGAAGGACCTGCACGCAATCAGTGCTGAGC
TGCAGAAGGAGGACAGTGACGAGCCAACACTTAAGCGAAAGAGAACCCGT
ACTCTCAAAGCGTCACAAGCTGCCAAAATTGAGCCTGTACCGTCTGAGGT
CAAGACTAAAGTGCAATCTGGAAAGGGCGCTCTTCGCAGGATTCGGGGCA
AGGACAAGGAGGAAAAGGTGAAGCCTCCGAAGCCGAAGTGCCGCTGCGGT
ATCTCCGGCTCGAGCAATACCCTCACCACCTGCCGGAATTCCCGATGTCC
TTGCTACAAGAGTTACAACAGCTGTGCCGGGTGTCATTGCGTGTGCTGCA
AGAATCCGCACAAGGAGGACTACGTTGAAAGTGATGAGGACGATGATTTG
GAGGATTTCGAAATGCCGAAGGACGTTCCAGAGCCGATGACTCAGTCGGA
GGAGCCGGTGGTAGCTGAGCCTAGGCAGGAGGAGAACAGTATGGCGCCGC
CAGACTCTTCTGCCCCCATAAGCCTAGTGCCGCTAAATAATTTGCAGCAA
TCCCAGCATCCTTTGGTGCTTGTTCAGAATGAGAAAGGCGAGTACCAGGG
CTTCAATATCTTCCAGGGCAGCAAGCCCCTTGATCCGGTCACCGTTGGCT
TCACTATTCGTGTCCAGCTGCAGCACACCGATGGCTTCGGTTCCCTTCCC
CAGTATGCTTATATAATGCCAACAATTGACCCGCCGAATCCACCAGCTCC
ATCACTTTCGCCACCACCGCCTCCTGCTCCTGACAGGGAAGTCATCGAGC
CACCGGCCAAGAAATTCAGGACCAGTCGAACACGCCGAGGAAGGGCCAAC
TTCTCGGCCCTCGACACGGTGGATGAGCTTGTCAGTGGCGGATCCAGGAG
CAATTCTGCCGCTGGCGACAGATCATCGGCCACTGACAATGCCCATTCAC
TGTTCGAGGAGATCATGTCGGGCTCGGATGACTTGGCAAGCTTTCTAGAC
CAT

BO10680.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
msl-2-RA 2322 CG3241-PA 1..2319 17..2335 11595 100 Plus
msl-2-RB 2322 CG3241-PB 1..2319 17..2335 11595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
msl-2-RA 3843 CG3241-RA 473..2792 16..2335 11600 100 Plus
msl-2-RB 3710 CG3241-RB 340..2659 16..2335 11600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3463706..3465640 1950..16 9675 100 Minus
2L 23513712 2L 3463269..3463655 2335..1949 1935 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:47:25 has no hits.

BO10680.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:11 Download gff for BO10680.complete
Subject Subject Range Query Range Percent Splice Strand
msl-2-RA 1..2322 17..2339 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:01 Download gff for BO10680.complete
Subject Subject Range Query Range Percent Splice Strand
msl-2-RA 463..2796 6..2341 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:19 Download gff for BO10680.complete
Subject Subject Range Query Range Percent Splice Strand
msl-2-RB 341..2659 17..2337 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:11 Download gff for BO10680.complete
Subject Subject Range Query Range Percent Splice Strand
msl-2-RA 463..2796 6..2341 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:25 Download gff for BO10680.complete
Subject Subject Range Query Range Percent Splice Strand
msl-2-RB 341..2659 17..2337 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:25 Download gff for BO10680.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3463267..3463654 1950..2337 99 <- Minus
2L 3463707..3465639 17..1949 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:19 Download gff for BO10680.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3463267..3463654 1950..2337 99 <- Minus
arm_2L 3463707..3465639 17..1949 100   Minus

BO10680.pep Sequence

Translation from 16 to 2353

> BO10680.pep
MAQTAYLKVTRIAMRSASNLSKRRVEELNSGLGELRQLLSCVVCCQLLVD
PYSPKGKRCQHNVCRLCLRGKKHLFPSCTQCEGCSDFKTYEENRMMAAQL
LCYKTLCVHLLHSALFGELAGMRPQVARELVPRIKLPPKTTQEFIREGSN
ISDTFDIFLPQPDLPFLKDMPTSLPAETPPTSAVTTPELPYDHHLNISDI
EAEAAATAEQGHFSPLPLLPTGSRMGMLSHAGQIVIATESSESGFMDQAW
TDQVDLSGTVSVSKYTNSGNNFAVSYVMPTSATTKFDPQELQIGQVVQMA
DSTQLAVLAAVEETVETSTQLTVLSTTVEETVETSTQLEVLTSAEEPNEI
SDQLANLQVEESDEALVEETVEEAEGTSIPSEVVAEHMEEDQHLDVHTSQ
SPTQTEMEEAVEEHVATKTQLGHVQTELQDAESLQKDFEDAKAAAEEAKE
KEKDLHAISAELQKEDSDEPTLKRKRTRTLKASQAAKIEPVPSEVKTKVQ
SGKGALRRIRGKDKEEKVKPPKPKCRCGISGSSNTLTTCRNSRCPCYKSY
NSCAGCHCVCCKNPHKEDYVESDEDDDLEDFEMPKDVPEPMTQSEEPVVA
EPRQEENSMAPPDSSAPISLVPLNNLQQSQHPLVLVQNEKGEYQGFNIFQ
GSKPLDPVTVGFTIRVQLQHTDGFGSLPQYAYIMPTIDPPNPPAPSLSPP
PPPAPDREVIEPPAKKFRTSRTRRGRANFSALDTVDELVSGGSRSNSAAG
DRSSATDNAHSLFEEIMSGSDDLASFLDH

BO10680.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
msl-2-PA 773 CG3241-PA 1..773 1..773 4007 100 Plus
msl-2-PB 773 CG3241-PB 1..773 1..773 4007 100 Plus