Clone Sequence Records
BO10680.3prime Sequence
922 bp (841 high quality bases) assembled on 2006-04-19
> BO10680.3prime
ATGGTCTAGAAAGCTTGCCAAGTCATCCGAGCCCGACATGATCTCCTCGA
ACAGTGAATGGGCATTGTCAGTGGCCGATGATCTGTCGCCAGCGGCAGAA
TTGCTCCTGGATCCGCCACTGACAAGCTCATCCACCGTGTCGAGGGCCGA
GAAGTTGGCCCTTCCTCGGCGTGTTCGACTGGTCCTGAATTTCTTGGCCG
GTGGCTCGATGACTTCCCTGTCAGGAGCAGGAGGCGGTGGTGGCGAAAGT
GATGGAGCTGGTGGATTCGGCGGGTCAATTGTTGGCATTATATAAGCATA
CTGGGGAAGGGAACCGAAGCCATCGGTGTGCTGCAGCTGGACACGAATAG
TGAAGCCAACGGTGACCGGATCAAGGGGCTTGCTGCCCTGGAAGATATTG
AAGCCCTGGTACTCGCCTTTCTCATTCTGAACAAGCACCAAAGGATGCTG
GGATTGCTGCAAATTATTTAGCGGCACTAGGCTTATGGGGGCAGAAGAGT
CTGGCGGCGCCATACTGTTCTCCTCCTGCCTAGGCTCAGCTACCACCGGC
TCCTCCGACTGAGTCATCGGCTCTGGAACGTCCTTCGGCATTTCGAAATC
CTCCAAATCATCGTCCTCATCACTTTCAACGTAGTCCTCCTTGTGCGGAT
TCTTGCAGCACACGCAATGACACCCGGCACAGCTGTTGTAACTCTTGTAG
CAAGGACATCGGGAATTCCGGCAGGTGGTGAGGGTATTGCTCGAGCCGGA
GATACCGCAGCGGCACTTCGGCTTCGGAGGCTTCACCTTTTCCTCCTTGT
CCTTGCCCCGAATCCTGCGAAGAGCGCCCTTTCCAGATTGCACTTTAGTC
TTGACCTCAGACGGTACAGGCTCAATTTTTGCAGCTTGTGACGCTTTGAG
AGTACGGGTTCTCTTTCGCTTA
BO10680.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3241-PB | 2322 | msl-2-RB | 1416..2319 | 922..19 | 4495 | 99.8 | Minus |
CG3241-PA | 2322 | msl-2-RA | 1416..2319 | 922..19 | 4495 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:22:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
msl-2-RA | 3843 | CG3241-RA | 1889..2792 | 922..19 | 4505 | 99.9 | Minus |
msl-2-RB | 3710 | CG3241-RB | 1756..2659 | 922..19 | 4505 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3463706..3464224 | 404..922 | 2580 | 99.8 | Plus |
2L | 23513712 | 2L | 3463269..3463655 | 19..405 | 1935 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:21:59 has no hits.
BO10680.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:08 Download gff for
BO10680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msl-2-PB | 1417..2322 | 15..921 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:02:02 Download gff for
BO10680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3241-PA | 1417..2322 | 15..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:54:47 Download gff for
BO10680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msl-2-RB | 1757..2664 | 13..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:08 Download gff for
BO10680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msl-2-RB | 1757..2664 | 13..921 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:08 Download gff for
BO10680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3463264..3463654 | 13..404 | 99 | <- | Plus |
2L | 3463707..3464223 | 405..921 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:54:47 Download gff for
BO10680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3463264..3463654 | 13..404 | 99 | <- | Plus |
arm_2L | 3463707..3464223 | 405..921 | 99 | | Plus |
BO10680.5prime Sequence
966 bp (771 high quality bases) assembled on 2006-04-19
> BO10680.5prime
GAAGTTATCAGTCGACATGGCCCAGACGGCATACTTGAAGGTGACACGCA
TCGCGATGCGCTCCGCTTCGAATCTTTCCAAACGGCGGGTGGAGGAGCTG
AACTCCGGGCTCGGCGAGCTACGGCAGCTGCTGTCTTGCGTGGTCTGCTG
CCAGCTGCTGGTGGATCCCTACTCGCCCAAGGGCAAGCGGTGCCAGCACA
ACGTGTGCCGGCTGTGTCTGCGCGGTAAGAAGCATCTGTTTCCCAGCTGC
ACCCAGTGCGAGGGTTGCTCCGACTTCAAGACCTACGAGGAGAACCGTAT
GATGGCCGCCCAGCTACTGTGCTACAAGACGCTGTGCGTCCACCTGCTCC
ACTCGGCATTATTTGGTGAGCTGGCCGGGATGCGGCCCCAGGTGGCCAGG
GAGCTGGTGCCTCGCATCAAGCTGCCTCCCAAAACCACACAGGAGTTCAT
TCGCGAGGGCTCAAACATCTCCGACACTTTTGACATCTTTCTGCCCCAGC
CGGATTTGCCGTTCCTCAAGGACATGCCCACATCGCTGCCCGCAGAGACG
CCGCCTACGTCGGCGGTCACGACTCCGGAACTGCCCTATGATCACCACCT
CAACATCAGCGACATTGAGGCGGAGGCGGCGGCCACAGCGGAGCAGGGTC
ACTTCTCGCCGCTTCCCCTGCTGCCCACAGGATCTCGCATGGGCATGCTC
TCTCACGCCGGGCAAATAGTCATTGCCACCGAGAGCTCGGAGTCGGGCTT
CATGGACCAAGCGTGGACGGATCAGGTAGACCTGTCTGGCACGGTTTCGG
TGTCCAAATACACAAATAGCGGCAACAACTTTGCTGTCTCCTACGTGATG
CCCACTTCTGCGACCACGAAGTTCGATCCACAGGAACTGCAAATCGGGCA
GGTGGTGCAAATGGCGGACTCCACTCAGTTGGCTGTGCTGGCTGCCGTTG
AGGAGACCGTCGAGAC
BO10680.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3241-PB | 2322 | msl-2-RB | 1..950 | 17..966 | 4725 | 99.8 | Plus |
CG3241-PA | 2322 | msl-2-RA | 1..950 | 17..966 | 4725 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:20:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
msl-2-RA | 3843 | CG3241-RA | 473..1423 | 16..966 | 4740 | 99.9 | Plus |
msl-2-RB | 3710 | CG3241-RB | 340..1290 | 16..966 | 4740 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:20:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3464690..3465640 | 966..16 | 4740 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:20:45 has no hits.
BO10680.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:09 Download gff for
BO10680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msl-2-PB | 1..950 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:02:04 Download gff for
BO10680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3241-PA | 1..950 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:14:27 Download gff for
BO10680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msl-2-RB | 331..1290 | 6..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:36:40 Download gff for
BO10680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msl-2-RB | 331..1290 | 6..966 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:36:40 Download gff for
BO10680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3464690..3465644 | 13..966 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:14:27 Download gff for
BO10680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3464690..3465644 | 13..966 | 99 | <- | Minus |
BO10680.complete Sequence
2353 bp (2353 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631843
> BO10680.complete
GAAGTTATCAGTCGACATGGCCCAGACGGCATACTTGAAGGTGACACGCA
TCGCGATGCGCTCCGCTTCGAATCTTTCCAAACGGCGGGTGGAGGAGCTG
AACTCCGGGCTCGGCGAGCTACGGCAGCTGCTGTCTTGCGTGGTCTGCTG
CCAGCTGCTGGTGGATCCCTACTCGCCCAAGGGCAAGCGGTGCCAGCACA
ACGTGTGCCGGCTGTGTCTGCGCGGTAAGAAGCATCTGTTTCCCAGCTGC
ACCCAGTGCGAGGGTTGCTCCGACTTCAAGACCTACGAGGAGAACCGTAT
GATGGCCGCCCAGCTACTGTGCTACAAGACGCTGTGCGTCCACCTGCTCC
ACTCGGCATTATTTGGTGAGCTGGCCGGGATGCGGCCCCAGGTGGCCAGG
GAGCTGGTGCCTCGCATCAAGCTGCCTCCCAAAACCACACAGGAGTTCAT
TCGCGAGGGCTCAAACATCTCCGACACTTTTGACATCTTTCTGCCCCAGC
CGGATTTGCCGTTCCTCAAGGACATGCCCACATCGCTGCCCGCAGAGACG
CCGCCTACGTCGGCGGTCACGACTCCGGAACTGCCCTATGATCACCACCT
CAACATCAGCGACATTGAGGCGGAGGCGGCGGCCACAGCGGAGCAGGGTC
ACTTCTCGCCGCTTCCCCTGCTGCCCACAGGATCTCGCATGGGCATGCTC
TCTCACGCCGGGCAAATAGTCATTGCCACCGAGAGCTCGGAGTCGGGCTT
CATGGACCAAGCGTGGACGGATCAGGTAGACCTGTCTGGCACGGTTTCGG
TGTCCAAATACACAAATAGCGGCAACAACTTTGCTGTCTCCTACGTGATG
CCCACTTCTGCGACCACGAAGTTCGATCCACAGGAACTGCAAATCGGCCA
GGTGGTGCAAATGGCGGACTCCACTCAGTTGGCTGTGCTGGCTGCCGTTG
AGGAGACCGTCGAGACGTCCACACAGTTGACTGTGCTCTCCACCACCGTT
GAAGAGACCGTTGAAACATCCACGCAGCTAGAAGTGCTTACCTCCGCTGA
GGAACCCAACGAAATCTCTGATCAATTGGCTAATCTGCAAGTTGAGGAAT
CTGATGAGGCTCTGGTTGAAGAGACCGTTGAAGAGGCCGAAGGGACCTCA
ATCCCGTCAGAGGTTGTAGCTGAGCACATGGAGGAGGATCAACACTTGGA
TGTGCACACTTCACAGTCACCTACACAAACCGAAATGGAGGAAGCAGTGG
AGGAGCATGTTGCCACAAAAACACAATTGGGTCATGTGCAAACAGAATTG
CAGGATGCGGAGTCGTTGCAGAAAGATTTTGAGGACGCAAAGGCAGCGGC
TGAAGAGGCGAAGGAGAAGGAGAAGGACCTGCACGCAATCAGTGCTGAGC
TGCAGAAGGAGGACAGTGACGAGCCAACACTTAAGCGAAAGAGAACCCGT
ACTCTCAAAGCGTCACAAGCTGCCAAAATTGAGCCTGTACCGTCTGAGGT
CAAGACTAAAGTGCAATCTGGAAAGGGCGCTCTTCGCAGGATTCGGGGCA
AGGACAAGGAGGAAAAGGTGAAGCCTCCGAAGCCGAAGTGCCGCTGCGGT
ATCTCCGGCTCGAGCAATACCCTCACCACCTGCCGGAATTCCCGATGTCC
TTGCTACAAGAGTTACAACAGCTGTGCCGGGTGTCATTGCGTGTGCTGCA
AGAATCCGCACAAGGAGGACTACGTTGAAAGTGATGAGGACGATGATTTG
GAGGATTTCGAAATGCCGAAGGACGTTCCAGAGCCGATGACTCAGTCGGA
GGAGCCGGTGGTAGCTGAGCCTAGGCAGGAGGAGAACAGTATGGCGCCGC
CAGACTCTTCTGCCCCCATAAGCCTAGTGCCGCTAAATAATTTGCAGCAA
TCCCAGCATCCTTTGGTGCTTGTTCAGAATGAGAAAGGCGAGTACCAGGG
CTTCAATATCTTCCAGGGCAGCAAGCCCCTTGATCCGGTCACCGTTGGCT
TCACTATTCGTGTCCAGCTGCAGCACACCGATGGCTTCGGTTCCCTTCCC
CAGTATGCTTATATAATGCCAACAATTGACCCGCCGAATCCACCAGCTCC
ATCACTTTCGCCACCACCGCCTCCTGCTCCTGACAGGGAAGTCATCGAGC
CACCGGCCAAGAAATTCAGGACCAGTCGAACACGCCGAGGAAGGGCCAAC
TTCTCGGCCCTCGACACGGTGGATGAGCTTGTCAGTGGCGGATCCAGGAG
CAATTCTGCCGCTGGCGACAGATCATCGGCCACTGACAATGCCCATTCAC
TGTTCGAGGAGATCATGTCGGGCTCGGATGACTTGGCAAGCTTTCTAGAC
CAT
BO10680.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:47:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
msl-2-RA | 2322 | CG3241-PA | 1..2319 | 17..2335 | 11595 | 100 | Plus |
msl-2-RB | 2322 | CG3241-PB | 1..2319 | 17..2335 | 11595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:47:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
msl-2-RA | 3843 | CG3241-RA | 473..2792 | 16..2335 | 11600 | 100 | Plus |
msl-2-RB | 3710 | CG3241-RB | 340..2659 | 16..2335 | 11600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:47:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3463706..3465640 | 1950..16 | 9675 | 100 | Minus |
2L | 23513712 | 2L | 3463269..3463655 | 2335..1949 | 1935 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:47:25 has no hits.
BO10680.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:11 Download gff for
BO10680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msl-2-RA | 1..2322 | 17..2339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:01 Download gff for
BO10680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msl-2-RA | 463..2796 | 6..2341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:19 Download gff for
BO10680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msl-2-RB | 341..2659 | 17..2337 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:11 Download gff for
BO10680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msl-2-RA | 463..2796 | 6..2341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:25 Download gff for
BO10680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msl-2-RB | 341..2659 | 17..2337 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:25 Download gff for
BO10680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3463267..3463654 | 1950..2337 | 99 | <- | Minus |
2L | 3463707..3465639 | 17..1949 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:19 Download gff for
BO10680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3463267..3463654 | 1950..2337 | 99 | <- | Minus |
arm_2L | 3463707..3465639 | 17..1949 | 100 | | Minus |
BO10680.pep Sequence
Translation from 16 to 2353
> BO10680.pep
MAQTAYLKVTRIAMRSASNLSKRRVEELNSGLGELRQLLSCVVCCQLLVD
PYSPKGKRCQHNVCRLCLRGKKHLFPSCTQCEGCSDFKTYEENRMMAAQL
LCYKTLCVHLLHSALFGELAGMRPQVARELVPRIKLPPKTTQEFIREGSN
ISDTFDIFLPQPDLPFLKDMPTSLPAETPPTSAVTTPELPYDHHLNISDI
EAEAAATAEQGHFSPLPLLPTGSRMGMLSHAGQIVIATESSESGFMDQAW
TDQVDLSGTVSVSKYTNSGNNFAVSYVMPTSATTKFDPQELQIGQVVQMA
DSTQLAVLAAVEETVETSTQLTVLSTTVEETVETSTQLEVLTSAEEPNEI
SDQLANLQVEESDEALVEETVEEAEGTSIPSEVVAEHMEEDQHLDVHTSQ
SPTQTEMEEAVEEHVATKTQLGHVQTELQDAESLQKDFEDAKAAAEEAKE
KEKDLHAISAELQKEDSDEPTLKRKRTRTLKASQAAKIEPVPSEVKTKVQ
SGKGALRRIRGKDKEEKVKPPKPKCRCGISGSSNTLTTCRNSRCPCYKSY
NSCAGCHCVCCKNPHKEDYVESDEDDDLEDFEMPKDVPEPMTQSEEPVVA
EPRQEENSMAPPDSSAPISLVPLNNLQQSQHPLVLVQNEKGEYQGFNIFQ
GSKPLDPVTVGFTIRVQLQHTDGFGSLPQYAYIMPTIDPPNPPAPSLSPP
PPPAPDREVIEPPAKKFRTSRTRRGRANFSALDTVDELVSGGSRSNSAAG
DRSSATDNAHSLFEEIMSGSDDLASFLDH
BO10680.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
msl-2-PA | 773 | CG3241-PA | 1..773 | 1..773 | 4007 | 100 | Plus |
msl-2-PB | 773 | CG3241-PB | 1..773 | 1..773 | 4007 | 100 | Plus |