Clone BO10681 Report

Search the DGRC for BO10681

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:106
Well:81
Vector:pDNR-Dual
Associated Gene/Transcriptbeat-Ic-RA
Protein status:BO10681.pep: validated full length
Sequenced Size:1636

Clone Sequence Records

BO10681.3prime Sequence

915 bp (829 high quality bases) assembled on 2006-04-19

> BO10681.3prime
ATGGTCTAGAAAGCTTGCGCACGCGCTCCAACGCGACTGCATCATCGCAT
CCATCGCCTGCGATTTCTTTTGCCGCCTTTCTCGCCGCCGAGTCATCAAT
AATCGTTGATCCGGCCCACTGGCCACGCCCCTTACAGCATTGACGCCCCC
CACAAGTGTCGCTGACAGCCGCTTAATGCTGCAACTCGCAACTCCTCCTG
CAGCAGCAACATCTGCAGCATCAGCATCGGCAGTTGCTGTCGCTGTTGCC
GTTGCATTTGCACTCGTGCTGCCAATATACGCATCACCACCGTCATCATC
ATCATCACGACTTCGAGTTGGCATCGCCATAGCCATTTGACAATTATAAA
AGCATTTGACGCTAGATGCGCTAGATGTTGCCGCTTTTGAAGCTGTCACC
TCGATGTTGCTGCTGCTGCCGCTGTTGCGTTGTTGCTGTTGCACCTTGCC
AGTCGCCGGCTTAGTGTATTGACAGTTGATAATTTGATGGCCCAGCGGCC
CTTGCTGCAGCAGGAAAAAAAGGAGAAGAGCAGCCGCTCCACCGCCCCCA
CATAGCCAGTGCCACGCCCCCGCCAACTGCCTGTTGATGGGGAGCTTTGT
GAGCTGCGATGGCCAGAACTGCCAGAAGATTTCGTGTGCAGCTGTCGAGG
CGCCCGATGCCGTGTTATCCGCGGAGTAGTACGTCAAATAGGACTCGTTG
TGATCCTCANAGCCGCCTCGTTCGCCATTCGTGTGCTCCTCGAGGGGATA
ATTGTTGATGTCATACGATCTGCCGGAAGCCATTATCCTGGGCCGGTCCT
CCTCGATGACACTCTCCATTTCCTCCTTGAAGATGTCAAAGATATTGGCC
GTGCACTTGAGCCTCATCTGGCCCTTGAGGAAAATGTGATTGGGTGACAT
GAAATGTATGGCACT

BO10681.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4838-PA 1605 beat-Ic-RA 738..1602 883..19 4306 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
beat-Ic-RC 4695 CG4838-RC 1623..2519 915..19 4384 99.4 Minus
beat-Ic-RB 4924 CG4838-RB 1852..2748 915..19 4384 99.4 Minus
beat-Ic-RA 3399 CG4838-RA 1623..2519 915..19 4384 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16038874..16039527 672..19 3270 100 Minus
2L 23513712 2L 16037336..16037526 862..672 944 99.5 Minus
Blast to na_te.dros performed 2015-02-11 11:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6733..6900 134..304 145 57.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6823..6904 442..363 143 67.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2431 181..307 137 57.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2386 179..232 132 74.1 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3275..3357 177..261 131 64.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6912 198..354 121 56.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6832..6866 200..234 121 82.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1548..1587 189..228 119 77.5 Plus
roo 9092 roo DM_ROO 9092bp 1115..1146 201..232 115 84.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6838..6883 188..233 113 71.7 Plus
roo 9092 roo DM_ROO 9092bp 1127..1164 201..238 109 76.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6885 198..307 108 57.7 Plus

BO10681.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:10 Download gff for BO10681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4838-PA 706..1605 16..915 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:02:05 Download gff for BO10681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4838-PA 706..1605 16..915 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:27:43 Download gff for BO10681.3prime
Subject Subject Range Query Range Percent Splice Strand
beat-Ic-RA 1623..2525 13..915 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:46:50 Download gff for BO10681.3prime
Subject Subject Range Query Range Percent Splice Strand
beat-Ic-RA 1623..2525 13..915 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:46:50 Download gff for BO10681.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16037210..16037263 862..915 92 -> Minus
2L 16037337..16037526 672..861 99 -> Minus
2L 16038875..16039525 21..671 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:27:43 Download gff for BO10681.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16037210..16037263 862..915 92 -> Minus
arm_2L 16037337..16037526 672..861 99 -> Minus
arm_2L 16038875..16039525 21..671 100 -> Minus

BO10681.5prime Sequence

847 bp (809 high quality bases) assembled on 2006-04-19

> BO10681.5prime
GAAGTTATCAGTCGACATGGCGAAGACGACTATTCCGGGGGCAAGCACCC
GTCACATGCAAATGGCCAATCGGTGGAGGACGGAAAAGGACGTTGGATCC
CATGGTTCCCAAAGTGGGCGTAGCTGCATCTGCTGGATATCCGTGGTACT
CCTACTCATTCTGGTGCCTGATTTTATTGAAGCACTCAAGGATGTGTCGG
TAATGATACCGCAGGCGGTGAAACGTGGCAGCAATGCGCTATTCACTTGT
AATTACGATATGGAAAACGATACTCTATATTCGGTTAAATGGTATAAGGG
CAAGCGTGAGTTTTATCGCTATACGCCCAAGGAGAATCCGGCGATGAAGG
TCTTTGCCATGACAAGTGGTCTCAATGTCGAGCGCAACCTTTCGAATCAG
AGCCACGTCGTCCTGCAGTCGGTGCCGCTGAATATTTCGGGGAAATTTAC
ATGCGAAATATCGGTGGAGGCGCCCACTTTTCAAACGGCCATGGTGTCCG
GCGAAATGGAGGTGGTTGAGCTGCCGGAAGAGCACACTGTGGTTACCGGG
ATACAGGCACGTTATCGCATCGGCGATTTGGTCGACGGCAATTGCTCAAT
TAAATACTCGAAACCGGCTGCTAATTTGACATGGACTATTAATGGTATTG
TGGTGCCACCGCATCACATAAAGACCTACCAGACGGAGAAGCGGGAGAAC
AGCACCCTGGAATCGGTTACAAGTGCCATACATTTCATGGTCACCAATCA
ACATTTCCTCAAGGGCCAGATGAGGCTCAAGTGCACGGCCAATATCTTTG
ACATCTTCAAGGANGAAATGGAGAGTGTCATCGAGGAGGACCGGCCC

BO10681.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4838-PA 1605 beat-Ic-RA 1..831 17..847 4136 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
beat-Ic-RC 4695 CG4838-RC 918..1748 17..847 4144 99.9 Plus
beat-Ic-RB 4924 CG4838-RB 1147..1977 17..847 4144 99.9 Plus
beat-Ic-RA 3399 CG4838-RA 918..1748 17..847 4144 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16032379..16032591 170..382 1065 100 Plus
2L 23513712 2L 16014135..16014288 17..170 770 100 Plus
2L 23513712 2L 16034186..16034323 381..518 690 100 Plus
2L 23513712 2L 16034579..16034715 518..654 685 100 Plus
2L 23513712 2L 16037140..16037263 652..775 620 100 Plus
2L 23513712 2L 16037336..16037408 775..847 354 98.6 Plus
2L 23513712 2L 15908107..15908216 342..233 190 78.2 Minus
Blast to na_te.dros performed on 2015-02-04 04:26:39 has no hits.

BO10681.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:11 Download gff for BO10681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4838-PA 1..831 17..847 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:02:07 Download gff for BO10681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4838-PA 1..831 17..847 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:01:45 Download gff for BO10681.5prime
Subject Subject Range Query Range Percent Splice Strand
beat-Ic-RA 915..1748 12..847 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:36:37 Download gff for BO10681.5prime
Subject Subject Range Query Range Percent Splice Strand
beat-Ic-RA 915..1748 12..847 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:36:37 Download gff for BO10681.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16014132..16014288 12..170 98 -> Plus
2L 16032380..16032591 171..382 100 -> Plus
2L 16034188..16034323 383..518 100 -> Plus
2L 16034580..16034713 519..652 100 -> Plus
2L 16037141..16037263 653..775 100 -> Plus
2L 16037337..16037408 776..847 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:01:45 Download gff for BO10681.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16014132..16014288 12..170 98 -> Plus
arm_2L 16032380..16032591 171..382 100 -> Plus
arm_2L 16034188..16034323 383..518 100 -> Plus
arm_2L 16034580..16034713 519..652 100 -> Plus
arm_2L 16037141..16037263 653..775 100 -> Plus
arm_2L 16037337..16037408 776..847 98   Plus

BO10681.complete Sequence

1636 bp assembled on 2007-10-26

GenBank Submission: FJ631844

> BO10681.complete
GAAGTTATCAGTCGACATGGCGAAGACGACTATTCCGGGGGCAAGCACCC
GTCACATGCAAATGGCCAATCGGTGGAGGACGGAAAAGGACGTTGGATCC
CATGGTTCCCAAAGTGGGCGTAGCTGCATCTGCTGGATATCCGTGGTACT
CCTACTCATTCTGGTGCCTGATTTTATTGAAGCACTCAAGGATGTGTCGG
TAATGATACCGCAGGCGGTGAAACGTGGCAGCAATGCGCTATTCACTTGT
AATTACGATATGGAAAACGATACTCTATATTCGGTTAAATGGTATAAGGG
CAAGCGTGAGTTTTATCGCTATACGCCCAAGGAGAATCCGGCGATGAAGG
TCTTTGCCATGACAAGTGGTCTCAATGTCGAGCGCAACCTTTCGAATCAG
AGCCACGTCGTCCTGCAGTCGGTGCCGCTGAATATTTCGGGGAAATTTAC
ATGCGAAATATCGGTGGAGGCGCCCACTTTTCAAACGGCCATGGTGTCCG
GCGAAATGGAGGTGGTTGAGCTGCCGGAAGAGCACACTGTGGTTACCGGG
ATACAGGCACGTTATCGCATCGGCGATTTGGTCGACGGCAATTGCTCAAT
TAAATACTCGAAACCGGCTGCTAATTTGACATGGACTATTAATGGTATTG
TGGTGCCACCGCATCACATAAAGACCTACCAGACGGAGAAGCGGGAGAAC
AGCACCCTGGAATCGGTTACAAGTGCCATACATTTCATGGTCACCAATCA
ACATTTCCTCAAGGGCCAGATGAGGCTCAAGTGCACGGCCAATATCTTTG
ACATCTTCAAGGAGGAAATGGAGAGTGTCATCGAGGAGGACCGGCCCAGG
ATAATGGCTTCCGGCAGATCGTATGACATCAACAATTATCCCCTCGAGGA
GCACACGAATGGCGAACGAGGCGGCTTTGAGGATCACAACGAGTCCTATT
TGACGTACTACTCCGCGGATAACACGGCATCGGGCGCCTCGACAGCTGCA
CACGAAATCTTCTGGCAGTTCTGGCCATCGCAGCTCACAAAGCTCCCCAT
CAACAGGCAGTTGGCGGGGGCGTGGCACTGGCTATGTGGGGGCGGTGGAG
CGGCTGCTCTTCTCCTTTTTTTCCTGCTGCAGCAAGGGCCGCTGGGCCAT
CAAATTATCAACTGTCAATACACTAAGCCGGCGACTGGCAAGGTGCAACA
GCAACAACGCAACAGCGGCAGCAGCAGCAACATCGAGGTGACAGCTTCAA
AAGCGGCAACATCTAGCGCATCTAGCGTCAAATGCTTTTATAATTGTCAA
ATGGCTATGGCGATGCCAACTCGAAGTCGTGATGATGATGATGACGGTGG
TGATGCGTATATTGGCAGCACGAGTGCAAATGCAACGGCAACAGCGACAG
CAACTGCCGATGCTGATGCTGCAGATGTTGCTGCTGCAGGAGGAGTTGCG
AGTTGCAGCATTAAGCGGCTGTCAGCGACACTTGTGGGGGGCGTCAATGC
TGTAAGGGGCGTGGCCAGTGGGCCGGATCAACGATTATTGATGACTCGGC
GGCGAGAAAGGCGGCAAAAGAAATCGCAGGCGATGGATGCGATGATGCAG
TCGCGTTGGAGCGCGTGCGCAAGCTTTCTAGACCAT

BO10681.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
beat-Ic-RC 1605 CG4838-PC 1..1602 17..1618 8010 100 Plus
beat-Ic-RB 1605 CG4838-PB 1..1602 17..1618 8010 100 Plus
beat-Ic-RA 1605 CG4838-PA 1..1602 17..1618 8010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
beat-Ic-RC 4695 CG4838-RC 918..2519 17..1618 8010 100 Plus
beat-Ic-RB 4924 CG4838-RB 1147..2748 17..1618 8010 100 Plus
beat-Ic-RA 3399 CG4838-RA 918..2519 17..1618 8010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16038874..16039527 965..1618 3270 100 Plus
2L 23513712 2L 16032379..16032591 170..382 1065 100 Plus
2L 23513712 2L 16037336..16037526 775..965 955 100 Plus
2L 23513712 2L 16014135..16014288 17..170 770 100 Plus
2L 23513712 2L 16034186..16034323 381..518 690 100 Plus
2L 23513712 2L 16034579..16034715 518..654 685 100 Plus
2L 23513712 2L 16037140..16037263 652..775 620 100 Plus
2L 23513712 2L 15908107..15908216 342..233 190 78.2 Minus
Blast to na_te.dros performed 2014-11-28 01:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6733..6900 1503..1333 145 57.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6823..6904 1195..1274 143 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2431 1456..1330 137 57.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2386 1458..1405 132 74.1 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3275..3357 1460..1376 131 64.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6832..6866 1437..1403 121 82.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1548..1587 1448..1409 119 77.5 Minus
roo 9092 roo DM_ROO 9092bp 1115..1146 1436..1405 115 84.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6838..6883 1449..1404 113 71.7 Minus

BO10681.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:32 Download gff for BO10681.complete
Subject Subject Range Query Range Percent Splice Strand
beat-Ic-RA 1..1605 17..1621 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:07:08 Download gff for BO10681.complete
Subject Subject Range Query Range Percent Splice Strand
beat-Ic-RA 898..2508 12..1624 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:01 Download gff for BO10681.complete
Subject Subject Range Query Range Percent Splice Strand
beat-Ic-RA 918..2519 17..1620 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:39 Download gff for BO10681.complete
Subject Subject Range Query Range Percent Splice Strand
beat-Ic-RA 901..2502 17..1620 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:49 Download gff for BO10681.complete
Subject Subject Range Query Range Percent Splice Strand
beat-Ic-RA 918..2519 17..1620 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:49 Download gff for BO10681.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16037337..16037526 776..965 100 -> Plus
2L 16014135..16014288 17..170 100 -> Plus
2L 16032380..16032591 171..382 100 -> Plus
2L 16034188..16034323 383..518 100 -> Plus
2L 16034580..16034713 519..652 100 -> Plus
2L 16037141..16037263 653..775 100 -> Plus
2L 16038875..16039527 966..1620 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:01 Download gff for BO10681.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16014135..16014288 17..170 100 -> Plus
arm_2L 16032380..16032591 171..382 100 -> Plus
arm_2L 16034188..16034323 383..518 100 -> Plus
arm_2L 16034580..16034713 519..652 100 -> Plus
arm_2L 16037141..16037263 653..775 100 -> Plus
arm_2L 16037337..16037526 776..965 100 -> Plus
arm_2L 16038875..16039527 966..1620 99   Plus

BO10681.pep Sequence

Translation from 16 to 1636

> BO10681.pep
MAKTTIPGASTRHMQMANRWRTEKDVGSHGSQSGRSCICWISVVLLLILV
PDFIEALKDVSVMIPQAVKRGSNALFTCNYDMENDTLYSVKWYKGKREFY
RYTPKENPAMKVFAMTSGLNVERNLSNQSHVVLQSVPLNISGKFTCEISV
EAPTFQTAMVSGEMEVVELPEEHTVVTGIQARYRIGDLVDGNCSIKYSKP
AANLTWTINGIVVPPHHIKTYQTEKRENSTLESVTSAIHFMVTNQHFLKG
QMRLKCTANIFDIFKEEMESVIEEDRPRIMASGRSYDINNYPLEEHTNGE
RGGFEDHNESYLTYYSADNTASGASTAAHEIFWQFWPSQLTKLPINRQLA
GAWHWLCGGGGAAALLLFFLLQQGPLGHQIINCQYTKPATGKVQQQQRNS
GSSSNIEVTASKAATSSASSVKCFYNCQMAMAMPTRSRDDDDDGGDAYIG
STSANATATATATADADAADVAAAGGVASCSIKRLSATLVGGVNAVRGVA
SGPDQRLLMTRRRERRQKKSQAMDAMMQSRWSACASFLDH

BO10681.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
beat-Ic-PC 534 CG4838-PC 1..534 1..534 2789 100 Plus
beat-Ic-PB 534 CG4838-PB 1..534 1..534 2789 100 Plus
beat-Ic-PA 534 CG4838-PA 1..534 1..534 2789 100 Plus
beat-Ib-PB 327 CG7644-PB 12..302 40..338 820 51.2 Plus
beat-Ib-PA 327 CG7644-PA 12..302 40..338 820 51.2 Plus