Clone Sequence Records
BO10684.3prime Sequence
902 bp (806 high quality bases) assembled on 2006-04-19
> BO10684.3prime
ATGGTCTAGAAAGCTTGCATCGTTATCGGATCGACCCGAGGACTTTTTGG
ACTTCTTATGCTTGCGCTTCTTTTCGCGATGCCGATTCTCTGAGCTGGAA
TCGCGTTTGCTCTTGGCGCCGGTGCTGGTGGCATCGGTTTTGGACGCACT
TCCGGCGGATGCAGCCGCATCCGGGTCCACGGAATCCTCTTCATGCAGCT
TCCTGAGCGTCTCGGCCTTCAGGCGCTCCAGTTCGTTGAGCTCGCGGGTG
GTGCGCTCCTTATCCAAGTCGTCCTGGCGCTGCTTCTCCATGCGGCGTTC
CTCCTCCTTGGCGATCTCGTTGCGCATGTGCTCCTTCATCAGCATGGCGG
CCTCCGCACGCTTCTGCATCTTCTCGCGGGCCGCCTTCTCGCGCTCCTCG
CTCATGGGCAGCGCGGAGGTGAGCTTGGGCAGCGGACTGCGCGAGCGACG
GCGGCGAGAGCGACTAGTTGAGGGACTGCGACTGCGCGAGGAACTGTGCC
AACGTCCACGGCTGCGACTGCGCCTGTTGCCGGACGATTCACGGCGTCTT
CTGCCATCGGAGTCCTGGCGCCTTCTGCCAGAAGATTCCTGGCGTCGTCT
GGCCGGTGAATCCTTGCGCCTTCTGTCAGGCGAGTCCCTGCGTTTCCTTT
CCGGCGAGTCCTGACGCTTTCTGCCTGGCGATTCTTGTCTTTTCACAGGA
GAATCCTGACGCTTCTTATCAGAATCCTTTCGCTTTTTGCTCGGGCTATC
CTCTCGTTTCTTACCCGCAGAATCCTCCTGCCTTTTGCTGTCCTGTATCT
TTTTGTCTTGGGAATCCTCCCGCTTTCTATTGGCGGAGTCCTTGCGCTTC
CTTGCAGGTGAATCGTCACGCTTCCAGTTGGGAGAAGCCTCCCGCTTCCT
GT
BO10684.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1866-PA | 2913 | Moca-cyp-RA | 2027..2910 | 902..19 | 4420 | 100 | Minus |
| CG1866-PB | 2058 | Moca-cyp-RB | 1172..2055 | 902..19 | 4420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:50:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Moca-cyp-RC | 3893 | CG1866-RC | 2853..3736 | 902..19 | 4420 | 100 | Minus |
| Moca-cyp-RB | 3726 | CG1866-RB | 2686..3569 | 902..19 | 4420 | 100 | Minus |
| Moca-cyp-RA | 3168 | CG1866-RA | 2128..3011 | 902..19 | 4420 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:50:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28344129..28345012 | 902..19 | 4420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:50:13 has no hits.
BO10684.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:17 Download gff for
BO10684.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1866-PB | 1172..2058 | 15..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:02:13 Download gff for
BO10684.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1866-PB | 1172..2058 | 15..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:53:16 Download gff for
BO10684.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moca-cyp-RA | 2128..3014 | 15..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:14 Download gff for
BO10684.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moca-cyp-RA | 2128..3014 | 15..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:14 Download gff for
BO10684.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28344129..28345015 | 15..902 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:53:16 Download gff for
BO10684.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24169851..24170737 | 15..902 | 99 | | Minus |
BO10684.5prime Sequence
736 bp (735 high quality bases) assembled on 2006-04-19
> BO10684.5prime
GAAGTTATCAGTCGACATGCGCGCAGAGCGATCAAAGTCGCTGGATCGTG
AGGAGCGTGGAGCACGCGGGCAGGATCGTGATCGAGGCAAAGATCAGGAT
CGAGACCGCAGCCGTAACAATTTCGGTTGGTCAAAGAAGCAGGCACCGCC
TACATCGCGTAGTGGTCGCATTGTCAAAGGACGCGGAGTGTTTCGCTTTC
GCACCCCGTCGCGTAGTCGTTCGCGCAGCACTACGCCACCTCACTGGAAG
CATGCCCAGAAGCGCACCATCAAGTTGTCCGACTTGGAGCGCATTGAGGA
GGAGAGCAAGATGCGCGAGGAGGAGATGAAGCGGCGCGAGCATGAGAGAA
AGCGTCGCCACGAGGAGGCCACAAAGAATCCTAAGCAGTCCTTTTTCGAG
CTATCCCATGCCAGCACTTACGGTGGCAAAATAACTCCGGATCGATTCTC
TCCAGAGCACAAAGCCAAGTCGAAGGACACCGCAGACCGCGGTAAAGCCA
AGGAGAGAGAAAAGGCTGGCGAGAAGGATAAGGCTAGGGATGTGACTCCT
GTAAAACGCCGCAAGTCGATGGACATGAACGCCTTGGACTACGAGCAGCA
GACAGAATCCGAAGTCGAGTCCGAGGACGAGGAGCAGTTGAAGGTGAAAC
CACCAAGCAAGCAGGATATCAGAGTGGAGCCATCGACCAGCAAGGATCGC
AACGCGAAACGCGATGAGCGCAAGCCCACCGAGGAG
BO10684.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1866-PA | 2913 | Moca-cyp-RA | 856..1575 | 17..736 | 3600 | 100 | Plus |
| CG1866-PB | 2058 | Moca-cyp-RB | 1..720 | 17..736 | 3600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:19:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Moca-cyp-RC | 3893 | CG1866-RC | 1682..2401 | 17..736 | 3600 | 100 | Plus |
| Moca-cyp-RB | 3726 | CG1866-RB | 1515..2234 | 17..736 | 3600 | 100 | Plus |
| Moca-cyp-RA | 3168 | CG1866-RA | 957..1676 | 17..736 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:19:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28343135..28343677 | 194..736 | 2715 | 100 | Plus |
| 3R | 32079331 | 3R | 28342898..28343074 | 17..193 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:19:13 has no hits.
BO10684.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:18 Download gff for
BO10684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1866-PB | 1..720 | 17..736 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:02:15 Download gff for
BO10684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1866-PB | 1..720 | 17..736 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:42:53 Download gff for
BO10684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moca-cyp-RA | 957..1676 | 17..736 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:41:44 Download gff for
BO10684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moca-cyp-RA | 957..1676 | 17..736 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:41:44 Download gff for
BO10684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28342898..28343074 | 17..193 | 100 | -> | Plus |
| 3R | 28343135..28343677 | 194..736 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:42:53 Download gff for
BO10684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24168620..24168796 | 17..193 | 100 | -> | Plus |
| arm_3R | 24168857..24169399 | 194..736 | 100 | | Plus |
BO10684.complete Sequence
2089 bp assembled on 2008-01-16
GenBank Submission: FJ638677
> BO10684.complete
GAAGTTATCAGTCGACATGCGCGCAGAGCGATCAAAGTCGCTGGATCGTG
AGGAGCGTGGAGCACGCGGGCAGGATCGTGATCGAGGCAAAGATCAGGAT
CGAGACCGCAGCCGTAACAATTTCGGTTGGTCAAAGAAGCAGGCACCGCC
TACATCGCGTAGTGGTCGCATTGTCAAAGGACGCGGAGTGTTTCGCTTTC
GCACCCCGTCGCGTAGTCGTTCGCGCAGCACTACGCCACCTCACTGGAAG
CATGCCCAGAAGCGCACCATCAAGTTGTCCGACTTGGAGCGCATTGAGGA
GGAGAGCAAGATGCGCGAGGAGGAGATGAAGCGGCGCGAGCATGAGAGAA
AGCGTCGCCACGAGGAGGCCACAAAGAATCCTAAGCAGTCCTTTTTCGAG
CTATCCCATGCCAGCACTTACGGTGGCAAAATAACTCCGGATCGATTCTC
TCCAGAGCACAAAGCCAAGTCGAAGGACACCGCAGACCGCGGTAAAGCCA
AGGAGAGAGAAAAGGCTGGCGAGAAGGATAAGGCTAGGGATGTGACTCCT
GTAAAACGCCGCAAGTCGATGGACATGAACGCCTTGGACTACGAGCAGCA
GACAGAATCCGAAGTCGAGTCCGAGGACGAGGAGCAGTTGAAGGTGAAAC
CACCAAGCAAGCAGGATATCAGAGTGGAGCCATCGACCAGCAAGGATCGC
AACGCGAAACGCGATGAGCGCAAGCCCACCGAGGAGAAGGCCAAGCCAAA
GCGCAGCCGTTCCCGGAGCCCTCGTCGCCAATCTCCTGCTCGTCGTCAGC
AACGCTCGCCTGCCCGACGTCCTGGCCAAAACTACAACCAAAACCAGAAT
CAGAATCAAAATCAGAATCAGAATCAGAATCAGCTTAATCGTGGCAATCG
CCGAAATCCCTTCGCGGACAGAGATCGCCGCCGTCGCTCGCGCTCTCAGG
ATAATGAGTACCGCAATCGTTACCCCCTGTCACCAATCAGAGGAAGAGGC
TCGCCCAGTGGAGACCGCCGGCGTCAGCAGCGCTCCCGCAGTCAGAACCG
TAGGCAGGATTCACCCAGCCAGAGGCGTCAGTTGTCGCCGGGCCGAAAAC
GTCAGGATTCGCCGAGTAAGAAGCGTCCCAATTCAACGGAAAGAAAGTGG
CGTGACTCGCCTGAAAGAAAGCGAGACGATTCACACGACAGGAAGCGGGA
GGCTTCTCCCAACTGGAAGCGTGACGATTCACCTGCAAGGAAGCGCAAGG
ACTCCGCCAATAGAAAGCGGGAGGATTCCCAAGACAAAAAGATACAGGAC
AGCAAAAGGCAGGAGGATTCTGCGGGTAAGAAACGAGAGGATAGCCCGAG
CAAAAAGCGAAAGGATTCTGATAAGAAGCGTCAGGATTCTCCTGTGAAAA
GACAAGAATCGCCAGGCAGAAAGCGTCAGGACTCGCCGGAAAGGAAACGC
AGGGACTCGCCTGACAGAAGGCGCAAGGATTCACCGGCCAGACGACGCCA
GGAATCTTCTGGCAGAAGGCGCCAGGACTCCGATGGCAGAAGACGCCGTG
AATCGTCCGGCAACAGGCGCAGTCGCAGCCGTGGACGTTGGCACAGTTCC
TCGCGCAGTCGCAGTCCCTCAACTAGTCGCTCTCGCCGCCGTCGCTCGCG
CAGTCCGCTGCCCAAGCTCACCTCCGCGCTGCCCATGAGCGAGGAGCGCG
AGAAGGCGGCCCGCGAGAAGATGCAGAAGCGTGCGGAGGCCGCCATGCTG
ATGAAGGAGCACATGCGCAACGAGATCGCCAAGGAGGAGGAACGCCGCAT
GGAGAAGCAGCGCCAGGACGACTTGGATAAGGAGCGCACCACCCGCGAGC
TCAACGAACTGGAGCGCCTGAAGGCCGAGACGCTCAGGAAGCTGCATGAA
GAGGATTCCGTGGACCCGGATGCGGCTGCATCCGCCGGAAGTGCGTCCAA
AACCGATGCCACCAGCACCGGCGCCAAGAGCAAACGCGATTCCAGCTCAG
AGAATCGGCATCGCGAAAAGAAGCGCAAGCATAAGAAGTCCAAAAAGTCC
TCGGGTCGATCCGATAACGATGCAAGCTTTCTAGACCAT
BO10684.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:58:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Moca-cyp-RC | 2058 | CG1866-PC | 1..2055 | 17..2071 | 10275 | 100 | Plus |
| Moca-cyp-RB | 2058 | CG1866-PB | 1..2055 | 17..2071 | 10275 | 100 | Plus |
| Moca-cyp-RA | 2913 | CG1866-PA | 856..2910 | 17..2071 | 10275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Moca-cyp-RC | 3893 | CG1866-RC | 1682..3736 | 17..2071 | 10275 | 100 | Plus |
| Moca-cyp-RB | 3726 | CG1866-RB | 1515..3569 | 17..2071 | 10275 | 100 | Plus |
| Moca-cyp-RA | 3168 | CG1866-RA | 957..3011 | 17..2071 | 10275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28343135..28345012 | 194..2071 | 9390 | 100 | Plus |
| 3R | 32079331 | 3R | 28342898..28343074 | 17..193 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:58:53 has no hits.
BO10684.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:34 Download gff for
BO10684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moca-cyp-RB | 1..2058 | 17..2075 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:16 Download gff for
BO10684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moca-cyp-RC | 1064..3118 | 17..2073 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:20 Download gff for
BO10684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moca-cyp-RA | 957..3011 | 17..2073 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:56:34 Download gff for
BO10684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moca-cyp-RB | 1496..3553 | 17..2075 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:14 Download gff for
BO10684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moca-cyp-RA | 957..3011 | 17..2073 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:14 Download gff for
BO10684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28342898..28343074 | 17..193 | 100 | -> | Plus |
| 3R | 28343135..28345012 | 194..2073 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:20 Download gff for
BO10684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24168620..24168796 | 17..193 | 100 | -> | Plus |
| arm_3R | 24168857..24170734 | 194..2073 | 99 | | Plus |
BO10684.pep Sequence
Translation from 16 to 2089
> BO10684.pep
MRAERSKSLDREERGARGQDRDRGKDQDRDRSRNNFGWSKKQAPPTSRSG
RIVKGRGVFRFRTPSRSRSRSTTPPHWKHAQKRTIKLSDLERIEEESKMR
EEEMKRREHERKRRHEEATKNPKQSFFELSHASTYGGKITPDRFSPEHKA
KSKDTADRGKAKEREKAGEKDKARDVTPVKRRKSMDMNALDYEQQTESEV
ESEDEEQLKVKPPSKQDIRVEPSTSKDRNAKRDERKPTEEKAKPKRSRSR
SPRRQSPARRQQRSPARRPGQNYNQNQNQNQNQNQNQNQLNRGNRRNPFA
DRDRRRRSRSQDNEYRNRYPLSPIRGRGSPSGDRRRQQRSRSQNRRQDSP
SQRRQLSPGRKRQDSPSKKRPNSTERKWRDSPERKRDDSHDRKREASPNW
KRDDSPARKRKDSANRKREDSQDKKIQDSKRQEDSAGKKREDSPSKKRKD
SDKKRQDSPVKRQESPGRKRQDSPERKRRDSPDRRRKDSPARRRQESSGR
RRQDSDGRRRRESSGNRRSRSRGRWHSSSRSRSPSTSRSRRRRSRSPLPK
LTSALPMSEEREKAAREKMQKRAEAAMLMKEHMRNEIAKEEERRMEKQRQ
DDLDKERTTRELNELERLKAETLRKLHEEDSVDPDAAASAGSASKTDATS
TGAKSKRDSSSENRHREKKRKHKKSKKSSGRSDNDASFLDH
BO10684.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Moca-cyp-PC | 685 | CG1866-PC | 1..685 | 1..685 | 3535 | 100 | Plus |
| Moca-cyp-PB | 685 | CG1866-PB | 1..685 | 1..685 | 3535 | 100 | Plus |
| Moca-cyp-PA | 970 | CG1866-PA | 286..970 | 1..685 | 3535 | 100 | Plus |
| CG2839-PA | 826 | CG2839-PA | 282..799 | 86..685 | 424 | 21.7 | Plus |
| CG2839-PA | 826 | CG2839-PA | 282..772 | 62..591 | 376 | 21.9 | Plus |
| CG2839-PA | 826 | CG2839-PA | 268..733 | 181..685 | 376 | 22.5 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 253..991 | 4..687 | 358 | 23.5 | Plus |
| CG2839-PA | 826 | CG2839-PA | 284..772 | 1..543 | 349 | 19.4 | Plus |
| CG2839-PA | 826 | CG2839-PA | 265..674 | 274..685 | 328 | 22.8 | Plus |
| CG2839-PA | 826 | CG2839-PA | 264..603 | 300..681 | 282 | 22.5 | Plus |
| Moca-cyp-PA | 970 | CG1866-PA | 187..737 | 172..685 | 224 | 20 | Plus |
| CG2839-PA | 826 | CG2839-PA | 394..794 | 4..417 | 223 | 17.6 | Plus |
| CG2839-PA | 826 | CG2839-PA | 263..502 | 463..685 | 168 | 23.1 | Plus |
