Clone Sequence Records
BO10689.3prime Sequence
867 bp (735 high quality bases) assembled on 2006-04-19
> BO10689.3prime
ATGGTCTAGAAAGCTTGCCATACCATTGGTGGCCTTAAACGTGCGACTAG
GATAGACTTTTTGTATATTTAGAAACGGCGGCGGCTTGGGGAATTCAGTG
ACGTTGTGGAATCGCTTCCCGAACTTGGTCTCCAAGTCGTTGACCAGTCG
ACCCACGCTGGCTGCAGCTCCTGCTCCCGAGCCTGATGACAAGCCCGAGC
TGCTGCCAAACTGATGCGAGGCATTGGCCATGTGCGTTGGTGGCGTCGAT
GGGGCGTTGGGCCGAATGGATGAGTGACGCTGCGGCGGAACTGGCGCTGA
TCCCGATCCGGAACCACCATTGCTCGACTGTCGCTGTGGAGGCGGCGGAG
GTGGGCAGCTGCGGTGTGGTGGCGGCGCTGGCGGATTTAGAGGACCTCCA
TTTAGGATAATAGGTTTGACATTGTCTCGCAGCAACGATTTGGGACTGGC
GCTTGCTGAGGATGGATTGGACGAGGGTGCGGGCGTCGGCGGCAGTGGCG
GTGATGGTGCTCCGTTAGACATTCCGGCGCCTCCACGGAATTGGTCGCGC
AGGGCAGCCACGCTATTGCTGCTGCTCGACGATGATGGCGGCTGGGTAAT
TGGCGGTGAGGGAGCCTGAGAACTGATGGCCGAGCTCTGGATAAGAGCTG
TGTTCACCGCACTGAACATCGTCGATCCGCCGATATTGTTCAGATTGGTG
TTGGAGAAACTGCGAGCCGGCGTGGGTGGCGGTGGTGGTTTTACCGATGG
GCGGGACTTTGGCGGGTTAGGGGCACATCTCATACTGCCTGCACTGGTGT
TGGGGCTGCTGGATTCGCTGCCATGGAACTGCAGTGGACCGCGCAGGGTG
CCTAAATGCTGCTGGGT
BO10689.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13503-PF | 2127 | CG13503-RF | 1276..2124 | 867..19 | 4245 | 100 | Minus |
| CG13503-PB | 2256 | CG13503-RB | 1276..1824 | 867..319 | 2745 | 100 | Minus |
| CG13503-PA | 2256 | CG13503-RA | 1276..1824 | 867..319 | 2745 | 100 | Minus |
| CG13503-PD | 2256 | CG13503-RD | 1276..1824 | 867..319 | 2745 | 100 | Minus |
| CG13503-PC | 2256 | CG13503-RC | 1276..1824 | 867..319 | 2745 | 100 | Minus |
| CG13503-PE | 2286 | CG13503-RE | 1306..1854 | 867..319 | 2745 | 100 | Minus |
| CG13503-PB | 2256 | CG13503-RB | 1954..2253 | 318..19 | 1500 | 100 | Minus |
| CG13503-PA | 2256 | CG13503-RA | 1954..2253 | 318..19 | 1500 | 100 | Minus |
| CG13503-PD | 2256 | CG13503-RD | 1954..2253 | 318..19 | 1500 | 100 | Minus |
| CG13503-PC | 2256 | CG13503-RC | 1954..2253 | 318..19 | 1500 | 100 | Minus |
| CG13503-PE | 2286 | CG13503-RE | 1984..2283 | 318..19 | 1500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:28:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vrp1-RK | 3216 | CG13503-RK | 1468..2316 | 867..19 | 4245 | 100 | Minus |
| Vrp1-RH | 3134 | CG13503-RH | 1386..2234 | 867..19 | 4245 | 100 | Minus |
| Vrp1-RF | 3407 | CG13503-RF | 1659..2507 | 867..19 | 4245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:28:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22109586..22110023 | 318..755 | 2190 | 100 | Plus |
| 2R | 25286936 | 2R | 22108481..22108780 | 19..318 | 1500 | 100 | Plus |
| 2R | 25286936 | 2R | 22110206..22110317 | 756..867 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:28:16 has no hits.
BO10689.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:25 Download gff for
BO10689.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13503-PF | 1276..2127 | 18..867 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:02:25 Download gff for
BO10689.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13503-PF | 1276..2127 | 18..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:21:30 Download gff for
BO10689.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vrp1-RF | 1946..2794 | 19..867 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:01 Download gff for
BO10689.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vrp1-RF | 1659..2507 | 19..867 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:01 Download gff for
BO10689.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22108481..22108780 | 19..318 | 100 | <- | Plus |
| 2R | 22109587..22110023 | 319..755 | 100 | <- | Plus |
| 2R | 22110206..22110317 | 756..867 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:21:30 Download gff for
BO10689.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17995986..17996285 | 19..318 | 100 | <- | Plus |
| arm_2R | 17997092..17997528 | 319..755 | 100 | <- | Plus |
| arm_2R | 17997711..17997822 | 756..867 | 100 | | Plus |
BO10689.5prime Sequence
809 bp (758 high quality bases) assembled on 2006-04-19
> BO10689.5prime
GAAGTTATCAGTCGACATGGCTATTCCGCCACCCCCGGGACCACCACCGC
CGCCAGGACCTCCACCGCCTCCGGCGATGGGTGGTCTTAAATTGGGCGGC
GCGGGAGGAGCAGACGCCCGATCTGCACTGCTGAGTTCGATCCAGAAGGG
AACAAAACTGAAGAAGACCACCACGGTGGACAAGAGTGGGCCAGCGCTGT
CTGGCAAGGTGTGCGGAGGAGATGGAGGAGCAGGTATCGGAGCTAAGCGA
ACCCTCAACAACAACACCAGCACCAGCAATCACAACAACAGCAGCAGTAG
CAGCAATGGCCTTGGCAATGGAACCCCCAAATTGGGAGGCCTGTTCGAAG
GCCTCTCGCAAATGCCAAAACTGAAGCCCGTGAACGGCATTCGCGCAACG
CCATCCGCCGGCTCGGCAGCAACAACGACATCGAAATCCACAACGAACTC
ATCCGCTCAGCAGCGGAGCAACAGCCCCCCCGCCGCGACGAGCGCCTCGA
ATGCCAGCAACGGACCCATGGACTTCAACACGGAGCTCACCAAGCACTTG
ACGTTGAAGCGCCAAAAACAGCAGCAGCAGCAACAACCACAGCCACCAAC
CAACAACACACATATCAATGCAACAGAAGCCAATCTGAGAACAAATCGGG
GACCACCACCGCAACCGCCAAAGTCAGCCAACTCAAATGATTCGATCTTG
GAGCGCATGAACATCCCCCGCACAGCGCCGACACCCCCCTTCGGCAACAG
TTCGAGTGTCAAAGCGGCATCGCCCACGCTCTCGGACAGCGGCAGCAACA
GCAGTGGGA
BO10689.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13503-PB | 2256 | CG13503-RB | 1..793 | 17..809 | 3965 | 100 | Plus |
| CG13503-PF | 2127 | CG13503-RF | 1..793 | 17..809 | 3965 | 100 | Plus |
| CG13503-PA | 2256 | CG13503-RA | 1..793 | 17..809 | 3965 | 100 | Plus |
| CG13503-PD | 2256 | CG13503-RD | 1..793 | 17..809 | 3965 | 100 | Plus |
| CG13503-PC | 2256 | CG13503-RC | 1..793 | 17..809 | 3965 | 100 | Plus |
| CG13503-PE | 2286 | CG13503-RE | 31..823 | 17..809 | 3965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vrp1-RK | 3216 | CG13503-RK | 193..985 | 17..809 | 3965 | 100 | Plus |
| Vrp1-RJ | 3888 | CG13503-RJ | 671..1463 | 17..809 | 3965 | 100 | Plus |
| Vrp1-RI | 3410 | CG13503-RI | 193..985 | 17..809 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22112210..22112588 | 395..17 | 1895 | 100 | Minus |
| 2R | 25286936 | 2R | 22111862..22112140 | 673..395 | 1395 | 100 | Minus |
| 2R | 25286936 | 2R | 22111374..22111511 | 809..672 | 690 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 21:29:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2666 | 256..606 | 262 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..7312 | 215..726 | 242 | 53.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2490..2921 | 256..686 | 217 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2605..3012 | 245..659 | 211 | 56.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2889 | 256..802 | 194 | 53.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6826 | 226..318 | 192 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6960 | 259..685 | 191 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6945 | 256..476 | 186 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6793 | 245..306 | 184 | 77.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2822 | 226..686 | 180 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2407..2468 | 245..306 | 166 | 74.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2421..2482 | 256..317 | 166 | 74.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2561..3011 | 229..670 | 166 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1545..1586 | 256..297 | 165 | 88.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..7050 | 395..643 | 161 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1575 | 252..310 | 160 | 74.6 | Plus |
| TART-A | 13424 | TART-A 13424bp | 91..201 | 240..353 | 157 | 63.5 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11269..11379 | 240..353 | 157 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2783..3031 | 227..473 | 153 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..7259 | 225..639 | 149 | 54.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1062..1167 | 217..320 | 147 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2440 | 217..305 | 143 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6826 | 217..306 | 140 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2838 | 245..304 | 138 | 70 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1095..1143 | 257..305 | 137 | 75.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1126 | 266..330 | 135 | 69.1 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 956..1022 | 244..306 | 135 | 73.1 | Plus |
| Doc2-element | 4789 | Doc2-element DOC2 4789bp | 550..590 | 256..296 | 133 | 80.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2775..2824 | 256..305 | 124 | 72 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2917..2978 | 257..318 | 121 | 66.1 | Plus |
| TART-A | 13424 | TART-A 13424bp | 896..953 | 256..314 | 121 | 69.5 | Plus |
| TART-A | 13424 | TART-A 13424bp | 12074..12131 | 256..314 | 121 | 69.5 | Plus |
| Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4490..4555 | 238..302 | 120 | 66.7 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7144..7237 | 281..379 | 114 | 60.6 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8597..8690 | 281..379 | 114 | 60.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1116 | 257..305 | 112 | 73.5 | Plus |
BO10689.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:26 Download gff for
BO10689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13503-PC | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:02:27 Download gff for
BO10689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13503-PE | 31..822 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:50:40 Download gff for
BO10689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vrp1-RI | 193..984 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:27 Download gff for
BO10689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vrp1-RI | 193..984 | 17..808 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:27 Download gff for
BO10689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22111375..22111509 | 674..808 | 100 | <- | Minus |
| 2R | 22111862..22112139 | 396..673 | 100 | <- | Minus |
| 2R | 22112210..22112588 | 17..395 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:50:40 Download gff for
BO10689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17998880..17999014 | 674..808 | 100 | <- | Minus |
| arm_2R | 17999367..17999644 | 396..673 | 100 | <- | Minus |
| arm_2R | 17999715..18000093 | 17..395 | 100 | | Minus |
BO10689.complete Sequence
2158 bp assembled on 2008-08-15
GenBank Submission: FJ631847
> BO10689.complete
GAAGTTATCAGTCGACATGGCTATTCCGCCACCCCCGGGACCACCACCGC
CGCCAGGACCTCCACCGCCTCCGGCGATGGGTGGTCTTAAATTGGGCGGC
GCGGGAGGAGCAGACGCCCGATCTGCACTGCTGAGTTCGATCCAGAAGGG
AACAAAACTGAAGAAGACCACCACGGTGGACAAGAGTGGGCCAGCGCTGT
CTGGCAAGGTGTGCGGAGGAGATGGAGGAGCAGGTATCGGAGCTAAGCGA
ACCCTCAACAACAACACCAGCACCAGCAATCACAACAACAGCAGCAGTAG
CAGCAATGGCCTTGGCAATGGAACCCCCAAATTGGGAGGCCTGTTCGAAG
GCCTCTCGCAAATGCCAAAACTGAAGCCCGTGAACGGCATTCGCGCAACG
CCATCCGCCGGCTCGGCAGCAACAACGACATCGAAATCCACAACGAACTC
ATCCGCTCAGCAGCGGAGCAACAGCCCCCCCGCCGCGACGAGCGCCTCGA
ATGCCAGCAACGGACCCATGGACTTCAACACGGAGCTCACCAAGCACTTG
ACGTTGAAGCGCCAAAAACAGCAGCAGCAGCAACAACCACAGCCACCAAC
CAACAACACACATATCAATGCAACAGAAGCCAATCTGAGAACAAATCGGG
GACCACCACCGCAACCGCCAAAGTCAGCCAACTCAAATGATTCGATCTTG
GAGCGCATGAACATCCCCCGCACAGCGCCGACACCCCCCTTCGGCAACAG
TTCGAGTGTCAAAGCGGCATCGCCCACGCTCTCGGACAGCGGCAGCAACA
GCAGTGGGAGTGGAGGTGGAAGTGGAAGTGTCAAGAGCAAGGCGGCCAAC
CTAAATATCTCGTTAGGCAATAGTTTTGTAAATAGTTCAAAATCAACCGT
GAGTGCCTCGACCGCGTCCTTAAACAGCAGTCTAACCTCCTCGACGGGAT
CAGTACGCAATCTGGCGCCAAATAAGTCCACTCTATTTGGTGGCAGCAGT
GGCTCTAGTTCCGGTTCGAGTTCTGGTGGTGGTTATGCATCTGTGCATAA
ATCCTCGCCACCCTCAACGGCAGATAGCACGCCGTCGGTGACGCCCACAC
CGCCACCGCTTCAGCTGCCGATGAAGCCGGCCATCAGCTTTGGCAAGCCC
AATTTTGCTCCGAAGCCACCGGGCTTGAATCAACTGGCGATGGCCAACGG
ACAGCAGCGTCCGGCGGTGACCAGGCACCACAGCATGAAGTCGCCCAGAT
CTCCGCCTGCGGCCGGTATCGTCAACGGCCTTGTGTTCCCCACCCAGCAG
CATTTAGGCACCCTGCGCGGTCCACTGCAGTTCCATGGCAGCGAATCCAG
CAGCCCCAACACCAGTGCAGGCAGTATGAGATGTGCCCCTAACCCGCCAA
AGTCCCGCCCATCGGTAAAACCACCACCGCCACCCACGCCGGCTCGCAGT
TTCTCCAACACCAATCTGAACAATATCGGCGGATCGACGATGTTCAGTGC
GGTGAACACAGCTCTTATCCAGAGCTCGGCCATCAGTTCTCAGGCTCCCT
CACCGCCAATTACCCAGCCGCCATCATCGTCGAGCAGCAGCAATAGCGTG
GCTGCCCTGCGCGACCAATTCCGTGGAGGCGCCGGAATGTCTAACGGAGC
ACCATCACCGCCACTGCCGCCGACGCCCGCACCCTCGTCCAATCCATCCT
CAGCAAGCGCCAGTCCCAAATCGTTGCTGCGAGACAATGTCAAACCTATT
ATCCTAAATGGAGGTCCTCTAAATCCGCCAGCGCCGCCACCACACCGCAG
CTGCCCACCTCCGCCGCCTCCACAGCGACAGTCGAGCAATGGTGGTTCCG
GATCGGGATCAGCGCCAGTTCCGCCGCAGCGTCACTCATCCATTCGGCCC
AACGCCCCATCGACGCCACCAACGCACATGGCCAATGCCTCGCATCAGTT
TGGCAGCAGCTCGGGCTTGTCATCAGGCTCGGGAGCAGGAGCTGCAGCCA
GCGTGGGTCGACTGGTCAACGACTTGGAGACCAAGTTCGGGAAGCGATTC
CACAACGTCACTGAATTCCCCAAGCCGCCGCCGTTTCTAAATATACAAAA
AGTCTATCCTAGTCGCACGTTTAAGGCCACCAATGGTATGGCAAGCTTTC
TAGACCAT
BO10689.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:08:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vrp1-RK | 2127 | CG13503-PK | 1..2124 | 17..2140 | 10620 | 100 | Plus |
| Vrp1-RH | 2157 | CG13503-PH | 31..2154 | 17..2140 | 10620 | 100 | Plus |
| Vrp1-RF | 2127 | CG13503-PF | 1..2124 | 17..2140 | 10620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vrp1-RH | 3134 | CG13503-RH | 111..2234 | 17..2140 | 10620 | 100 | Plus |
| Vrp1-RK | 3216 | CG13503-RK | 193..2316 | 17..2140 | 10620 | 100 | Plus |
| Vrp1-RF | 3407 | CG13503-RF | 384..2507 | 17..2140 | 10620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22109586..22110023 | 1841..1404 | 2190 | 100 | Minus |
| 2R | 25286936 | 2R | 22110546..22110938 | 1248..856 | 1965 | 100 | Minus |
| 2R | 25286936 | 2R | 22112210..22112588 | 395..17 | 1895 | 100 | Minus |
| 2R | 25286936 | 2R | 22108481..22108780 | 2140..1841 | 1500 | 100 | Minus |
| 2R | 25286936 | 2R | 22111862..22112140 | 673..395 | 1395 | 100 | Minus |
| 2R | 25286936 | 2R | 22111328..22111511 | 855..672 | 920 | 100 | Minus |
| 2R | 25286936 | 2R | 22110206..22110363 | 1403..1246 | 790 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:08:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2666 | 256..606 | 262 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..7312 | 215..726 | 242 | 53.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2490..2921 | 256..686 | 217 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2605..3012 | 245..659 | 211 | 56.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2889 | 256..802 | 194 | 53.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6826 | 226..318 | 192 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6945 | 256..476 | 186 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6793 | 245..306 | 184 | 77.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2822 | 226..686 | 180 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2407..2468 | 245..306 | 166 | 74.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2421..2482 | 256..317 | 166 | 74.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2561..3011 | 229..670 | 166 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1545..1586 | 256..297 | 165 | 88.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1575 | 252..310 | 160 | 74.6 | Plus |
| TART-A | 13424 | TART-A 13424bp | 91..201 | 240..353 | 157 | 63.5 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11269..11379 | 240..353 | 157 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2783..3031 | 227..473 | 153 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..7259 | 225..639 | 149 | 54.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1062..1167 | 217..320 | 147 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2440 | 217..305 | 143 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6826 | 217..306 | 140 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2838 | 245..304 | 138 | 70 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1095..1143 | 257..305 | 137 | 75.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1126 | 266..330 | 135 | 69.1 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 956..1022 | 244..306 | 135 | 73.1 | Plus |
| Doc2-element | 4789 | Doc2-element DOC2 4789bp | 550..590 | 256..296 | 133 | 80.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2775..2824 | 256..305 | 124 | 72 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2917..2978 | 257..318 | 121 | 66.1 | Plus |
| TART-A | 13424 | TART-A 13424bp | 896..953 | 256..314 | 121 | 69.5 | Plus |
| TART-A | 13424 | TART-A 13424bp | 12074..12131 | 256..314 | 121 | 69.5 | Plus |
BO10689.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:55:30 Download gff for
BO10689.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vrp1-RD | 175..1993 | 17..1835 | 100 | -> | Plus |
| Vrp1-RD | 2122..2427 | 1836..2140 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:39 Download gff for
BO10689.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vrp1-RF | 671..2794 | 17..2142 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:50 Download gff for
BO10689.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vrp1-RD | 175..1993 | 17..1835 | 100 | -> | Plus |
| Vrp1-RD | 2122..2427 | 1836..2142 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:00 Download gff for
BO10689.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vrp1-RF | 384..2507 | 17..2142 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:00 Download gff for
BO10689.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22111328..22111509 | 674..855 | 100 | <- | Minus |
| 2R | 22108479..22108780 | 1841..2142 | 99 | <- | Minus |
| 2R | 22109587..22110023 | 1404..1840 | 100 | <- | Minus |
| 2R | 22110206..22110360 | 1249..1403 | 100 | <- | Minus |
| 2R | 22110546..22110938 | 856..1248 | 100 | <- | Minus |
| 2R | 22111862..22112139 | 396..673 | 100 | <- | Minus |
| 2R | 22112210..22112588 | 17..395 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:39 Download gff for
BO10689.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17995984..17996285 | 1841..2142 | 99 | <- | Minus |
| arm_2R | 17997092..17997528 | 1404..1840 | 100 | <- | Minus |
| arm_2R | 17997711..17997865 | 1249..1403 | 100 | <- | Minus |
| arm_2R | 17998051..17998443 | 856..1248 | 100 | <- | Minus |
| arm_2R | 17998833..17999014 | 674..855 | 100 | <- | Minus |
| arm_2R | 17999367..17999644 | 396..673 | 100 | <- | Minus |
| arm_2R | 17999715..18000093 | 17..395 | 100 | | Minus |
BO10689.pep Sequence
Translation from 16 to 2158
> BO10689.pep
MAIPPPPGPPPPPGPPPPPAMGGLKLGGAGGADARSALLSSIQKGTKLKK
TTTVDKSGPALSGKVCGGDGGAGIGAKRTLNNNTSTSNHNNSSSSSNGLG
NGTPKLGGLFEGLSQMPKLKPVNGIRATPSAGSAATTTSKSTTNSSAQQR
SNSPPAATSASNASNGPMDFNTELTKHLTLKRQKQQQQQQPQPPTNNTHI
NATEANLRTNRGPPPQPPKSANSNDSILERMNIPRTAPTPPFGNSSSVKA
ASPTLSDSGSNSSGSGGGSGSVKSKAANLNISLGNSFVNSSKSTVSASTA
SLNSSLTSSTGSVRNLAPNKSTLFGGSSGSSSGSSSGGGYASVHKSSPPS
TADSTPSVTPTPPPLQLPMKPAISFGKPNFAPKPPGLNQLAMANGQQRPA
VTRHHSMKSPRSPPAAGIVNGLVFPTQQHLGTLRGPLQFHGSESSSPNTS
AGSMRCAPNPPKSRPSVKPPPPPTPARSFSNTNLNNIGGSTMFSAVNTAL
IQSSAISSQAPSPPITQPPSSSSSSNSVAALRDQFRGGAGMSNGAPSPPL
PPTPAPSSNPSSASASPKSLLRDNVKPIILNGGPLNPPAPPPHRSCPPPP
PPQRQSSNGGSGSGSAPVPPQRHSSIRPNAPSTPPTHMANASHQFGSSSG
LSSGSGAGAAASVGRLVNDLETKFGKRFHNVTEFPKPPPFLNIQKVYPSR
TFKATNGMASFLDH
BO10689.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vrp1-PK | 708 | CG13503-PK | 1..708 | 1..708 | 3691 | 100 | Plus |
| Vrp1-PH | 718 | CG13503-PH | 11..718 | 1..708 | 3691 | 100 | Plus |
| Vrp1-PF | 708 | CG13503-PF | 1..708 | 1..708 | 3691 | 100 | Plus |
| Vrp1-PJ | 809 | CG13503-PJ | 1..706 | 1..706 | 3680 | 100 | Plus |
| Vrp1-PI | 809 | CG13503-PI | 1..706 | 1..706 | 3680 | 100 | Plus |
