Clone BO10692 Report

Search the DGRC for BO10692

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:106
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptDrl-2-RB
Protein status:BO10692.pep:
Sequenced Size:1978

Clone Sequence Records

BO10692.3prime Sequence

901 bp (786 high quality bases) assembled on 2006-04-19

> BO10692.3prime
ATGGTCTAGAAAGCTTGCGATGTACATGCCCAGATCCGCATGGAAGTCCT
GCAGATACGATAGCAACTGTGAGGGCGTAGGTCGCTGTTTGGCCTCGCAG
TGCCAGCAGCAGTTCATAACCGTAAAGAATTCATCTGGGCAGTTGACTGG
CTGCTCCAGCCGGAAGCCGGCAGCCAAGTAATTGGTAAGCTCGAATATAT
CCACCTCCTCGTGCGGCATCTGCGCCAGAGTGACCAGCTCCCAGTAGGTC
ACGCCCAAGGCCCACACGTCGCCCTGGGTGGCATAGACCCGCTTCTGGAG
GGATTCCAGCGACAGCCACTTCAGCGGGCGATTCTCATTGTCGCCCAGAC
AGTCGTAGTCGTCTGGGAAGAGATCGCGAGAGAGGGCGCTATCGCAGATC
TTCACATAGGACTCTTCGTCAAGGTAGCAATTGCGTGTAGCAATGTCCTT
GTGAACGATTCCCAGTGAGTGCAGATAGGCCAATCCCTTGGTGATGTGCA
GCCCAAACTCAACCAGTTGGCGCGTACTCAATGCTGTGCTCGATTCCCGC
GACTTTTGCAAGTACATCTTGAGATTGCCCTTGGACGGATGGGGATAGGC
AATCTCCGGTGGACCCGGCAGCTCCGTGTTGGCCAACAGCGGTGCCAGGA
TGTGCTGATGACTGACGCCGATCAGCAGGGAGGCGTCCTGCAGCAGGCAG
GCCACCTGGGTGAGCGATGCGCCATCGATGACGGTCTTTACGAGCGCCTC
GCATGACTCGCCCAGCTTGCCGGCGTAAATCCGGCCGAAGGTGCCCTCCT
TGACCAGCTCCTCGTAGCTGAGGGCACCGGGCTGGACGCTGGTTATCCGT
CGCAGCCGTTGGTTACCCTTCTCCCCGTGACTGGGCATGGTGATGGTGCT
G

BO10692.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3915-PB 1947 Drl-2-RB 1062..1944 901..19 4390 99.8 Minus
CG3915-PA 873 Drl-2-RA 5..870 884..19 4330 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
Drl-2-RC 6020 CG3915-RC 2271..3153 901..19 4400 99.9 Minus
Drl-2-RB 4688 CG3915-RB 2271..3153 901..19 4400 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13058972..13059310 563..901 1680 99.7 Plus
2R 25286936 2R 13058317..13058613 128..424 1485 100 Plus
2R 25286936 2R 13058731..13058871 425..565 705 100 Plus
2R 25286936 2R 13058113..13058221 19..127 545 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:02:03 has no hits.

BO10692.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:31 Download gff for BO10692.3prime
Subject Subject Range Query Range Percent Splice Strand
Drl-2-PB 1062..1947 15..901 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:02:35 Download gff for BO10692.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3915-PB 1062..1947 15..901 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:30:19 Download gff for BO10692.3prime
Subject Subject Range Query Range Percent Splice Strand
Drl-2-RB 2271..3158 13..901 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:12:36 Download gff for BO10692.3prime
Subject Subject Range Query Range Percent Splice Strand
Drl-2-RB 2271..3158 13..901 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:12:36 Download gff for BO10692.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13058317..13058613 128..424 100 <- Plus
2R 13058731..13058871 425..565 100 <- Plus
2R 13058975..13059310 566..901 99   Plus
2R 13058108..13058221 13..127 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:30:19 Download gff for BO10692.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8945613..8945726 13..127 98 <- Plus
arm_2R 8945822..8946118 128..424 100 <- Plus
arm_2R 8946236..8946376 425..565 100 <- Plus
arm_2R 8946480..8946815 566..901 99   Plus

BO10692.5prime Sequence

893 bp (862 high quality bases) assembled on 2006-04-19

> BO10692.5prime
GAAGTTATCAGTCGACATGGAACTCCTTCCTCTGAAGTCGCCCCTCCCGA
TCCTGCTCCTATGCCTAACCATTTCCACTTCGGTCAGCGGCTATCTGAAC
ATTTTCATCAGCCACCACGAGGTGATGAAACTGATGGGACTCGAGGCGGA
CCTGTTCTATGTGCACGAGGGAGCCATCAACACATACGCAATGCACTTCA
CCGTCCCAGTGCCCGCGGATGTCCATGAGCTGGAGTTTTCCTGGCAGAGT
CTGATTGCCTACCCACTGCCATACGCCATTAGTATTGAGTATAACAACGA
CCAGGAGGCACTGGGCACGCCCACGTTGAGCATTCCGCACAAGGGTCTGG
TGCCACAGGAGATCGAGTCCTTCCTGGTTTACCTGCCCTGCACCGGAAAT
GCGAGCCTACAGATGCCCGTCAATGTCAACATGGTAGTACGGGCTCCTCC
TCGATTCAACGACACCCGGCTCCACTTTAAGCGCAATAAGATCTGCGCCA
AAGGCATCTCACCTGAGCCCAATCAATCGCCGGCGCCAGCCCACGCACCC
TCCCAAGGACCCGCCCTCCTCAGTGCCGCCGCCTGTGCTCTGGGTTTGGT
TTTGGCCGTGGGACTAGTGGCCAGCATGATGTATGTGAGGGCGCGCAAAC
AGCTTCGCCAGGACTCGCTACACACCAGTTTCACCACCGCAGCTTATGGC
AGCCACCAAAACGTGTTCATCCGACTGGATCCCCTGGGAAGACCGCCGAG
TGCCACGGGATCCTATGCGACCATTGCCAGCCTCAACAAATACCCTGCGG
ACAGCAAAAAGTCGTGCAGCATATTCGACCGTTTCCGGAGCTCACCCACC
CCCACGCCGTATGCCACCGCCCTGCTGCCCATGAACCTTGAAC

BO10692.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3915-PB 1947 Drl-2-RB 1..877 17..893 4385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:15:07
Subject Length Description Subject Range Query Range Score Percent Strand
Drl-2-RC 6020 CG3915-RC 1209..2086 16..893 4390 100 Plus
Drl-2-RB 4688 CG3915-RB 1209..2086 16..893 4390 100 Plus
CG13325-RB 3610 CG13325-RB 753..874 16..137 610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13067809..13068047 504..266 1195 100 Minus
2R 25286936 2R 13067573..13067743 672..502 855 100 Minus
2R 25286936 2R 13067352..13067511 832..673 800 100 Minus
2R 25286936 2R 13068109..13068237 265..137 645 100 Minus
2R 25286936 2R 13072577..13072699 138..16 615 100 Minus
2R 25286936 2R 13111521..13111643 16..138 615 100 Plus
2R 25286936 2R 13067215..13067277 893..831 315 100 Minus
Blast to na_te.dros performed on 2015-02-11 12:15:05 has no hits.

BO10692.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:32 Download gff for BO10692.5prime
Subject Subject Range Query Range Percent Splice Strand
Drl-2-PB 1..877 17..893 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:02:37 Download gff for BO10692.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3915-PB 1..877 17..893 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:28:05 Download gff for BO10692.5prime
Subject Subject Range Query Range Percent Splice Strand
Drl-2-RB 1204..2086 12..893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:37:21 Download gff for BO10692.5prime
Subject Subject Range Query Range Percent Splice Strand
Drl-2-RB 1204..2086 12..893 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:37:21 Download gff for BO10692.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13067215..13067277 831..893 100 <- Minus
2R 13067354..13067511 673..830 100 <- Minus
2R 13067573..13067741 504..672 100 <- Minus
2R 13067810..13068047 266..503 100 <- Minus
2R 13068109..13068236 138..265 100 <- Minus
2R 13072578..13072704 12..137 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:28:05 Download gff for BO10692.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8954720..8954782 831..893 100 <- Minus
arm_2R 8954859..8955016 673..830 100 <- Minus
arm_2R 8955078..8955246 504..672 100 <- Minus
arm_2R 8955315..8955552 266..503 100 <- Minus
arm_2R 8955614..8955741 138..265 100 <- Minus
arm_2R 8960083..8960209 12..137 98   Minus

BO10692.complete Sequence

1978 bp assembled on 2008-01-16

GenBank Submission: FJ631848

> BO10692.complete
GAAGTTATCAGTCGACATGGAACTCCTTCCTCTGAAGTCGCCCCTCCCGA
TCCTGCTCCTATGCCTAACCATTTCCACTTCGGTCAGCGGCTATCTGAAC
ATTTTCATCAGCCACCACGAGGTGATGAAACTGATGGGACTCGAGGCGGA
CCTGTTCTATGTGCACGAGGGAGCCATCAACACATACGCAATGCACTTCA
CCGTCCCAGTGCCCGCGGATGTCCATGAGCTGGAGTTTTCCTGGCAGAGT
CTGATTGCCTACCCACTGCCATACGCCATTAGTATTGAGTATAACAACGA
CCAGGAGGCACTGGGCACGCCCACGTTGAGCATTCCGCACAAGGGTCTGG
TGCCACAGGAGATCGAGTCCTTCCTGGTTTACCTGCCCTGCACCGGAAAT
GCGAGCCTACAGATGCCCGTCAATGTCAACATGGTAGTACGGGCTCCTCC
TCGATTCAACGACACCCGGCTCCACTTTAAGCGCAATAAGATCTGCGCCA
AAGGCATCTCACCTGAGCCCAATCAATCGCCGGCGCCAGCCCACGCACCC
TCCCAAGGACCCGCCCTCCTCAGTGCCGCCGCCTGTGCTCTGGGTTTGGT
TTTGGCCGTGGGACTAGTGGCCAGCATGATGTATGTGAGGGCGCGCAAAC
AGCTTCGCCAGGACTCGCTACACACCAGTTTCACCACCGCAGCTTATGGC
AGCCACCAAAACGTGTTCATCCGACTGGATCCCCTGGGAAGACCGCCGAG
TGCCACGGGATCCTATGCGACCATTGCCAGCCTCAACAAATACCCTGCGG
ACAGCAAAAAGTCGTGCAGCATATTCGACCGTTTCCGGAGCTCACCCACC
CCCACGCCGTATGCCACCGCCCTGCTGCCCATGAACCTTGAACAGACCGC
AGAGACGATTTACTCGAAGCCAGAGTCGATCTGTCCCTCGAGGATTTCCT
ACTACGCCTCCTCGCAACTGACCCAGCCTTGCAGCCTATCGACGCCGAAG
AGCATCCGAAGCAACGGCAATGGCAACTGCACCAGCGGAAGTGGCAGCCT
AAGCCTTTTTGGAGGCATCCCCACCGGCAGCACCATCACCATGGCCAGTC
ACGGGGAGAAGGGTAACCAACGGCTGCGACGGATAACCAGCGTCCAGCCC
GGTGCCCTCAGCTACGAGGAGCTGGTCAAGGAGGGCACCTTCGGCCGGAT
TTACGCCGGCAAGCTGGGCGAGTCATGCGAGGCGCTCGTAAAGACCGTCA
TCGATGGCGCATCGCTCACCCAGGTGGCCTGCCTGCTGCAGGACGCCTCC
CTGCTGATCGGCGTCAGTCATCAGCACATCCTGGCACCGCTGTTGGCCAA
CACGGAGCTGCCGGGTCCACCGGAGATTGCCTATCCCCATCCGTCCAAGG
GCAATCTCAAGATGTACTTGCAAAAGTCGCGGGAATCGAGCACAGCATTG
AGTACGCGCCAACTGGTTGAGTTTGGGCTGCACATCACCAAGGGATTGGC
CTATCTGCACTCACTGGGAATCGTTCACAAGGACATTGCTACACGCAATT
GCTACCTTGACGAAGAGTCCTATGTGAAGATCTGCGATAGCGCCCTCTCT
CGCGATCTCTTCCCAGACGACTACGACTGTCTGGGCGACAATGAGAATCG
CCCGCTGAAGTGGCTGTCGCTGGAATCCCTCCAGAAGCGGGTCTATGCCA
CCCAGGGCGACGTGTGGGCCTTGGGCGTGACCTACTGGGAGCTGGTCACT
CTGGCGCAGATGCCGCACGAGGAGGTGGATATATTCGAGCTTACCAATTA
CTTGGCTGCCGGCTTCCGGCTGGAGCAGCCAGTCAACTGCCCAGATGAAT
TCTTTACGGTTATGAACTGCTGCTGGCACTGCGAGGCCAAACAGCGACCT
ACGCCCTCACAGTTGCTATCGTATCTGCAGGACTTCCATGCGGATCTGGG
CATGTACATCGCAAGCTTTCTAGACCAT

BO10692.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
Drl-2-RC 1947 CG3915-PC 1..1944 17..1960 9720 100 Plus
Drl-2-RB 1947 CG3915-PB 1..1944 17..1960 9720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
Drl-2-RC 6020 CG3915-RC 1209..3153 16..1960 9725 100 Plus
Drl-2-RB 4688 CG3915-RB 1209..3153 16..1960 9725 100 Plus
CG13325-RB 3610 CG13325-RB 753..874 16..137 610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13058972..13059414 1416..974 2215 100 Minus
2R 25286936 2R 13058317..13058613 1851..1555 1485 100 Minus
2R 25286936 2R 13067809..13068047 504..266 1195 100 Minus
2R 25286936 2R 13067573..13067743 672..502 855 100 Minus
2R 25286936 2R 13067352..13067511 832..673 800 100 Minus
2R 25286936 2R 13067132..13067277 976..831 730 100 Minus
2R 25286936 2R 13058731..13058871 1554..1414 705 100 Minus
2R 25286936 2R 13068109..13068237 265..137 645 100 Minus
2R 25286936 2R 13072577..13072699 138..16 615 100 Minus
2R 25286936 2R 13111521..13111643 16..138 615 100 Plus
2R 25286936 2R 13058113..13058221 1960..1852 545 100 Minus
2R 25286936 2R 13116412..13116500 888..976 400 96.6 Plus
Blast to na_te.dros performed on 2014-11-28 07:42:02 has no hits.

BO10692.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:35 Download gff for BO10692.complete
Subject Subject Range Query Range Percent Splice Strand
Drl-2-RB 1..1947 17..1964 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:37:02 Download gff for BO10692.complete
Subject Subject Range Query Range Percent Splice Strand
Drl-2-RB 1209..3152 17..1962 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:53 Download gff for BO10692.complete
Subject Subject Range Query Range Percent Splice Strand
Drl-2-RB 1210..3153 17..1962 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:56:35 Download gff for BO10692.complete
Subject Subject Range Query Range Percent Splice Strand
Drl-2-RB 1203..3157 12..1966 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:02:02 Download gff for BO10692.complete
Subject Subject Range Query Range Percent Splice Strand
Drl-2-RB 1210..3153 17..1962 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:02:02 Download gff for BO10692.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13058111..13058221 1852..1962 98 <- Minus
2R 13058731..13058871 1414..1554 100 <- Minus
2R 13058317..13058613 1555..1851 100 <- Minus
2R 13058975..13059411 977..1413 100 <- Minus
2R 13067132..13067277 831..976 100 <- Minus
2R 13067354..13067511 673..830 100 <- Minus
2R 13067573..13067741 504..672 100 <- Minus
2R 13067810..13068047 266..503 100 <- Minus
2R 13068109..13068236 138..265 100 <- Minus
2R 13072578..13072698 17..137 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:53 Download gff for BO10692.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8954859..8955016 673..830 100 <- Minus
arm_2R 8955078..8955246 504..672 100 <- Minus
arm_2R 8955315..8955552 266..503 100 <- Minus
arm_2R 8955614..8955741 138..265 100 <- Minus
arm_2R 8960083..8960203 17..137 100   Minus
arm_2R 8945616..8945726 1852..1962 98 <- Minus
arm_2R 8945822..8946118 1555..1851 100 <- Minus
arm_2R 8946236..8946376 1414..1554 100 <- Minus
arm_2R 8946480..8946916 977..1413 100 <- Minus
arm_2R 8954637..8954782 831..976 100 <- Minus

BO10692.pep Sequence

Translation from 16 to 1978

> BO10692.pep
MELLPLKSPLPILLLCLTISTSVSGYLNIFISHHEVMKLMGLEADLFYVH
EGAINTYAMHFTVPVPADVHELEFSWQSLIAYPLPYAISIEYNNDQEALG
TPTLSIPHKGLVPQEIESFLVYLPCTGNASLQMPVNVNMVVRAPPRFNDT
RLHFKRNKICAKGISPEPNQSPAPAHAPSQGPALLSAAACALGLVLAVGL
VASMMYVRARKQLRQDSLHTSFTTAAYGSHQNVFIRLDPLGRPPSATGSY
ATIASLNKYPADSKKSCSIFDRFRSSPTPTPYATALLPMNLEQTAETIYS
KPESICPSRISYYASSQLTQPCSLSTPKSIRSNGNGNCTSGSGSLSLFGG
IPTGSTITMASHGEKGNQRLRRITSVQPGALSYEELVKEGTFGRIYAGKL
GESCEALVKTVIDGASLTQVACLLQDASLLIGVSHQHILAPLLANTELPG
PPEIAYPHPSKGNLKMYLQKSRESSTALSTRQLVEFGLHITKGLAYLHSL
GIVHKDIATRNCYLDEESYVKICDSALSRDLFPDDYDCLGDNENRPLKWL
SLESLQKRVYATQGDVWALGVTYWELVTLAQMPHEEVDIFELTNYLAAGF
RLEQPVNCPDEFFTVMNCCWHCEAKQRPTPSQLLSYLQDFHADLGMYIAS
FLDH

BO10692.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
Drl-2-PC 648 CG3915-PC 1..648 1..648 3395 100 Plus
Drl-2-PB 648 CG3915-PB 1..648 1..648 3395 100 Plus
dnt-PB 584 CG17559-PB 299..584 362..648 639 45.8 Plus
dnt-PA 584 CG17559-PA 299..584 362..648 639 45.8 Plus
drl-PA 610 CG17348-PA 310..610 352..648 615 43.9 Plus
dnt-PB 584 CG17559-PB 28..187 8..167 305 39.1 Plus
dnt-PA 584 CG17559-PA 28..187 8..167 305 39.1 Plus