Clone Sequence Records
BO10710.3prime Sequence
772 bp (771 high quality bases) assembled on 2006-04-19
> BO10710.3prime
ATGGTCTAGAAAGCTTGCGGCATCGGCGTGCAGACGAGGAGTGGGCTTGG
ACAGGAAGTCCGAGTATGCCTGGTAAGGAGTGGAGCCCAGAGGCATCTCC
TTCCACAGATCGGGGGTCAAGTACGCGTACGTCTTGGCGATGGCGGCATA
TGTAGCCTTGGCGAAGTTGCCGAGGGTTCCAGTGGAGCCACGGGCCGAGG
TGTAGCAATCCTCAATACCGGCCATGGTCAGCAGCTTCTTGGGCACGGGG
GCCGAGACAATGCCAGTACCACGGGGAGCGGGGATGAGGCGCACGGAGAC
GGAACCGCACTTGCCGGTGACCTTGCAGGGCACGGTGTGGGGCTTGCCGA
TCTTGTTGCCCCAGTAGCCACGGCGCACGGGCACCACGGAGAGCTTGGCC
AGAATGATGGCACCACGGATGGCGGTGGCCACTTCCTTGCTGCACTTAAC
GCCCAGACCAATGTGGCCATTGTTGTCGCCGATGGCAACGAAGGCCTTGA
AACGGGTACGCTGACCAGCACGGGTCTGCTTCTGGACGGGCATGATCTTC
AGCACCTCATCCTTCAGCGAGGATCCCAGGAAGAAGTCGATGATCTCGAA
CTCTTTGATGGGAAGCGAGTACAGGTAGATCTCCTCCAAAGACTTGATCT
TGCCCTCGCGCACCAGGCGTCCCAGCTTGGTCACTGGCACCCACTCCTTG
GAGTCCTCCTTTCCACGTCCACGGGCCCAGCGTCCACGGCCACGACCGCG
TCCACCACGACCACCACGAGAG
BO10710.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5920-PA | 804 | sop-RA | 48..801 | 772..19 | 3770 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:59:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS2-RC | 947 | CG5920-RC | 129..882 | 772..19 | 3770 | 100 | Minus |
| RpS2-RB | 1177 | CG5920-RB | 359..1112 | 772..19 | 3770 | 100 | Minus |
| RpS2-RA | 916 | CG5920-RA | 98..851 | 772..19 | 3770 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:59:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9896330..9897083 | 19..772 | 3770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:59:50 has no hits.
BO10710.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:55 Download gff for
BO10710.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sop-PA | 48..804 | 15..772 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:03:10 Download gff for
BO10710.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5920-PA | 48..804 | 15..772 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:39:48 Download gff for
BO10710.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS2-RA | 98..855 | 14..772 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:42:11 Download gff for
BO10710.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS2-RA | 98..855 | 14..772 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:42:11 Download gff for
BO10710.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9896326..9897083 | 14..772 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:39:48 Download gff for
BO10710.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9896326..9897083 | 14..772 | 99 | | Plus |
BO10710.5prime Sequence
833 bp (820 high quality bases) assembled on 2006-04-19
> BO10710.5prime
GAAGTTATCAGTCGACATGGCGGACGAAGCTCCAGCCCGTAGTGGATTCC
GTGGCGGATTTGGCTCTCGTGGTGGTCGTGGTGGACGCGGTCGTGGCCGT
GGACGCTGGGCCCGTGGACGTGGAAAGGAGGACTCCAAGGAGTGGGTGCC
AGTGACCAAGCTGGGACGCCTGGTGCGCGAGGGCAAGATCAAGTCTTTGG
AGGAGATCTACCTGTACTCGCTTCCCATCAAAGAGTTCGAGATCATCGAC
TTCTTCCTGGGATCCTCGCTGAAGGATGAGGTGCTGAAGATCATGCCCGT
CCAGAAGCAGACCCGTGCTGGTCAGCGTACCCGTTTCAAGGCCTTCGTTG
CCATCGGCGACAACAATGGCCACATTGGTCTGGGCGTTAAGTGCAGCAAG
GAAGTGGCCACCGCCATCCGTGGTGCCATCATTCTGGCCAAGCTCTCCGT
GGTGCCCGTGCGCCGTGGCTACTGGGGCAACAAGATCGGCAAGCCCCACA
CCGTGCCCTGCAAGGTCACCGGCAAGTGCGGTTCCGTCTCCGTGCGCCTC
ATCCCCGCTCCCCGTGGTACTGGCATTGTCTCGGCCCCCGTGCCCAAGAA
GCTGCTGACCATGGCCGGTATTGAGGATTGCTACACCTCGGCCCGTGGCT
CCACTGGAACCCTCGGCAACTTCGCCAAGGCTACATATGCCGCCATCGCC
AAGACGTACGCGTACTTGACCCCCGATCTGTGGAAGGAGATGCCTCTGGG
CTCCACTCCTTACCAGGCATACTCGGACTTCCTGTCCAAGCCCACTCCTC
GTCTGCACGCCGATGCCGCAAGCTTTCTAGACC
BO10710.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5920-PA | 804 | sop-RA | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS2-RC | 947 | CG5920-RC | 82..882 | 17..817 | 4005 | 100 | Plus |
| RpS2-RB | 1177 | CG5920-RB | 312..1112 | 17..817 | 4005 | 100 | Plus |
| RpS2-RA | 916 | CG5920-RA | 51..851 | 17..817 | 4005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:25:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9896330..9897130 | 817..17 | 4005 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 04:25:27 has no hits.
BO10710.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:56 Download gff for
BO10710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sop-PA | 1..804 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:03:11 Download gff for
BO10710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5920-PA | 1..804 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:01:35 Download gff for
BO10710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS2-RA | 51..855 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:36:28 Download gff for
BO10710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS2-RA | 51..855 | 17..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:36:28 Download gff for
BO10710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9896326..9897135 | 8..822 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:01:35 Download gff for
BO10710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9896326..9897135 | 8..822 | 99 | | Minus |
BO10710.complete Sequence
835 bp (835 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631852
> BO10710.complete
GAAGTTATCAGTCGACATGGCGGACGAAGCTCCAGCCCGTAGTGGATTCC
GTGGCGGATTTGGCTCTCGTGGTGGTCGTGGTGGACGCGGTCGTGGCCGT
GGACGCTGGGCCCGTGGACGTGGAAAGGAGGACTCCAAGGAGTGGGTGCC
AGTGACCAAGCTGGGACGCCTGGTGCGCGAGGGCAAGATCAAGTCTTTGG
AGGAGATCTACCTGTACTCGCTTCCCATCAAAGAGTTCGAGATCATCGAC
TTCTTCCTGGGATCCTCGCTGAAGGATGAGGTGCTGAAGATCATGCCCGT
CCAGAAGCAGACCCGTGCTGGTCAGCGTACCCGTTTCAAGGCCTTCGTTG
CCATCGGCGACAACAATGGCCACATTGGTCTGGGCGTTAAGTGCAGCAAG
GAAGTGGCCACCGCCATCCGTGGTGCCATCATTCTGGCCAAGCTCTCCGT
GGTGCCCGTGCGCCGTGGCTACTGGGGCAACAAGATCGGCAAGCCCCACA
CCGTGCCCTGCAAGGTCACCGGCAAGTGCGGTTCCGTCTCCGTGCGCCTC
ATCCCCGCTCCCCGTGGTACTGGCATTGTCTCGGCCCCCGTGCCCAAGAA
GCTGCTGACCATGGCCGGTATTGAGGATTGCTACACCTCGGCCCGTGGCT
CCACTGGAACCCTCGGCAACTTCGCCAAGGCTACATATGCCGCCATCGCC
AAGACGTACGCGTACTTGACCCCCGATCTGTGGAAGGAGATGCCTCTGGG
CTCCACTCCTTACCAGGCATACTCGGACTTCCTGTCCAAGCCCACTCCTC
GTCTGCACGCCGATGCCGCAAGCTTTCTAGACCAT
BO10710.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:03:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS2-RC | 804 | CG5920-PC | 1..801 | 17..817 | 4005 | 100 | Plus |
| RpS2-RB | 804 | CG5920-PB | 1..801 | 17..817 | 4005 | 100 | Plus |
| RpS2-RA | 804 | CG5920-PA | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS2-RC | 947 | CG5920-RC | 82..882 | 17..817 | 4005 | 100 | Plus |
| RpS2-RB | 1177 | CG5920-RB | 312..1112 | 17..817 | 4005 | 100 | Plus |
| RpS2-RA | 916 | CG5920-RA | 51..851 | 17..817 | 4005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9896330..9897130 | 817..17 | 4005 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:03:09 has no hits.
BO10710.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:06 Download gff for
BO10710.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sop-RA | 1..804 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:32 Download gff for
BO10710.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sop-RA | 72..876 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:15 Download gff for
BO10710.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS2-RA | 51..851 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:06 Download gff for
BO10710.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sop-RA | 72..876 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:11 Download gff for
BO10710.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS2-RA | 51..851 | 17..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:11 Download gff for
BO10710.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9896328..9897130 | 17..819 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:15 Download gff for
BO10710.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9896328..9897130 | 17..819 | 99 | | Minus |
BO10710.pep Sequence
Translation from 16 to 835
> BO10710.pep
MADEAPARSGFRGGFGSRGGRGGRGRGRGRWARGRGKEDSKEWVPVTKLG
RLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTR
AGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR
GYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMA
GIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQ
AYSDFLSKPTPRLHADAASFLDH
BO10710.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS2-PC | 267 | CG5920-PC | 1..267 | 1..267 | 1396 | 100 | Plus |
| RpS2-PB | 267 | CG5920-PB | 1..267 | 1..267 | 1396 | 100 | Plus |
| RpS2-PA | 267 | CG5920-PA | 1..267 | 1..267 | 1396 | 100 | Plus |
