Clone Sequence Records
BO10712.3prime Sequence
908 bp (860 high quality bases) assembled on 2006-04-19
> BO10712.3prime
ATGGTCTAGAAAGCTTGCGTGCGTCTTGTTTCCCAGTGCTGCCGCGGCAT
AAATCTGAGCCCATTCGGGGAACGAGTTAAGGTTCGGATAGACGACCAGG
CCCCAGGTTTGGCAGAAAACAAACAGGGTGATGATGGTAATGATGGTCGG
ACCGATTCCAGCAATGGCCATGTCCTTCGTCCTAATGTTGGCATAGCCAG
CAACCAAAGCGTTGGGCGGAGTACTAACCGGCAGGTGGAAGGCCATACTG
CAGGCCAAGCCAGCGGGCAGGATCAGGTACAGAGGATGGATCTCAATGGC
CAGGGACATCTCGGCCAGAACGGGAATAATAATGTTGGCAATCGCCACAT
TGGAGCTGAAGGCGGTCAGGAACACAGCCACCAGGATGACCACCAGTAAG
AGGACAGAGTTGGGCAGAACCTTCAATCCAATCAGAGCATTGCCAATCAG
CTTGGCCATGCCGCTCTGCTTGCTGCCTTCGGCCAAAGCGAAGCCACCGC
CAAGCAGGAACACCAGACCCCATGGCACCTTGGTCTGGATGAACTTCCAG
GTGATCAGCGATGGAGTGGGACCCGTGGGCACTGGACCACCGCGTCTGGT
GCAGTAGCGTAGGAAAGCATAATTGGCGGGCAGCATGAAGCACATGACGA
CGACAAAAATAGTGGGCATAGAGTTACGAATGTCCTTGGAATTCAGCAAA
TCGGCCCATCCCAAAAAGATGCCGGGCTTGCGGGTGAAGTACATCACAAC
CATAAAAATGAACAGAATCATCACTTGGATCTCGTGAATGGACATGGGAC
CCAGATCCTTGTAGCGCTGATCGATAACCTTTTTGGCGACATCGGCGCCC
TCTCGTCCCCTCTGGACTTCCTGTGCCTCCCTGCTCTTGGGACGCCACAG
ACCCATGA
BO10712.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3979-PB | 1773 | Indy-RB | 881..1770 | 908..19 | 4425 | 99.8 | Minus |
CG3979-PC | 1719 | Indy-RC | 827..1716 | 908..19 | 4425 | 99.8 | Minus |
CG3979-PA | 1719 | Indy-RA | 827..1716 | 908..19 | 4425 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:23:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Indy-RD | 2581 | CG3979-RD | 1098..1987 | 908..19 | 4435 | 99.9 | Minus |
Indy-RA | 2484 | CG3979-RA | 1001..1890 | 908..19 | 4435 | 99.9 | Minus |
Indy-RC | 2600 | CG3979-RC | 1117..2006 | 908..19 | 4435 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:23:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18829579..18829963 | 307..691 | 1910 | 99.7 | Plus |
3L | 28110227 | 3L | 18829226..18829514 | 19..307 | 1445 | 100 | Plus |
3L | 28110227 | 3L | 18830275..18830498 | 685..908 | 1105 | 99.6 | Plus |
Blast to na_te.dros performed 2015-02-09 02:23:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 1564..1616 | 64..9 | 120 | 71.4 | Minus |
BO10712.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:57 Download gff for
BO10712.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Indy-PA | 828..1719 | 18..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:03:12 Download gff for
BO10712.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3979-PA | 828..1719 | 18..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:46:09 Download gff for
BO10712.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Indy-RC | 1118..2006 | 19..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:20:35 Download gff for
BO10712.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Indy-RC | 1118..2006 | 19..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:20:35 Download gff for
BO10712.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18829220..18829513 | 15..306 | 98 | <- | Plus |
3L | 18829579..18829957 | 307..685 | 100 | <- | Plus |
3L | 18830276..18830497 | 686..907 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:46:09 Download gff for
BO10712.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18822320..18822613 | 15..306 | 98 | <- | Plus |
arm_3L | 18822679..18823057 | 307..685 | 100 | <- | Plus |
arm_3L | 18823376..18823597 | 686..907 | 99 | | Plus |
BO10712.5prime Sequence
887 bp (814 high quality bases) assembled on 2006-04-19
> BO10712.5prime
GAAGTTATCAGTCGACATGGAAATTGAAATTGGCGAACAACCCCAGCCTC
CGGTGAAGTGCTCCAACTTCTTCGCTAACCACTGGAAGGGATTGGTTGTG
TTCCTGGTGCCGCTGCTATGTCTGCCTGTTATGCTGCTAAACGAAGGCGC
CGAATTTCGGTGCATGTACCTCCTTTTGGTAATGGCCATATTTTGGGTTA
CGGAAGCCTTGCCTCTCTATGTGACGTCCATGATACCGATTGTGGCCTTC
CCAATAATGGGTATAATGAGCTCGGATCAGACTTGCCGCTTGTACTTCAA
GGATACGCTGGTGATGTTCATGGGCGGCATTATGGTCGCCCTGGCTGTGG
AGTACTGTAATCTACACAAACGTCTTGCCTTGAGGGTAATCCAGATCGTG
GGCTGCAGTCCCCGCAGATTACACTTTGGCCTCATCATGGTTACAATGTT
TTTGAGCATGTGGATTTCGAACGCCGCCTGTACTGCCATGATGTGTCCGA
TTATCCAAGCCGTGCTGGAGGAGCTGCAGGCTCAGGGTGTCTGCAAAATC
AACCATGAGCCTCAATACCAAATCGTTGGAGGCAACAAGAAAAACAACGA
GGATGAGCCACCATACCCCACCAAGATCACTCTGTGCTACTATCTGGGCA
TTGCCTACGCCTCCTCGCTGGGTGGCTGTGGAACCATCATCGGAACTGCC
ACCAATCTTACCTTCAAGGGCATCTACGAGGCTCGTTTCAAGAACTCCAC
CGAACAGATGGACTTCCCCACCTTCATGTTCTACTCGGTGCCATCCATGT
TGGTCTACACCTTGCTGACATTCGTGTTCCTGCAATGGCACTTCATGGGT
CTGTGGCGTCCCAAGAGCAAGGAGGCACAGGAAGTCC
BO10712.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3979-PB | 1773 | Indy-RB | 55..925 | 17..887 | 4355 | 100 | Plus |
CG3979-PC | 1719 | Indy-RC | 1..871 | 17..887 | 4355 | 100 | Plus |
CG3979-PA | 1719 | Indy-RA | 1..871 | 17..887 | 4355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:10:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Indy-RD | 2581 | CG3979-RD | 272..1142 | 17..887 | 4355 | 100 | Plus |
Indy-RA | 2484 | CG3979-RA | 175..1045 | 17..887 | 4355 | 100 | Plus |
Indy-RC | 2600 | CG3979-RC | 291..1161 | 17..887 | 4355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:10:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18830454..18830734 | 887..607 | 1405 | 100 | Minus |
3L | 28110227 | 3L | 18830839..18831035 | 607..411 | 970 | 99.5 | Minus |
3L | 28110227 | 3L | 18831093..18831242 | 417..268 | 750 | 100 | Minus |
3L | 28110227 | 3L | 18831494..18831621 | 152..25 | 640 | 100 | Minus |
3L | 28110227 | 3L | 18831311..18831427 | 268..152 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 04:10:23 has no hits.
BO10712.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:58 Download gff for
BO10712.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Indy-PA | 1..871 | 17..887 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:03:14 Download gff for
BO10712.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3979-PA | 1..871 | 17..887 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:42:58 Download gff for
BO10712.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Indy-RC | 284..1161 | 9..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:20:42 Download gff for
BO10712.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Indy-RC | 284..1161 | 9..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:20:42 Download gff for
BO10712.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18830454..18830734 | 607..887 | 100 | <- | Minus |
3L | 18830840..18831028 | 418..606 | 100 | <- | Minus |
3L | 18831093..18831241 | 269..417 | 100 | <- | Minus |
3L | 18831311..18831427 | 152..268 | 100 | <- | Minus |
3L | 18831495..18831621 | 25..151 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:42:58 Download gff for
BO10712.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18823554..18823834 | 607..887 | 100 | <- | Minus |
arm_3L | 18823940..18824128 | 418..606 | 100 | <- | Minus |
arm_3L | 18824193..18824341 | 269..417 | 100 | <- | Minus |
arm_3L | 18824411..18824527 | 152..268 | 100 | <- | Minus |
arm_3L | 18824595..18824721 | 25..151 | 100 | <- | Minus |
BO10712.complete Sequence
1750 bp (1750 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631853
> BO10712.complete
GAAGTTATCAGTCGACATGGAAATTGAAATTGGCGAACAACCCCAGCCTC
CGGTGAAGTGCTCCAACTTCTTCGCTAACCACTGGAAGGGATTGGTTGTG
TTCCTGGTGCCGCTGCTATGTCTGCCTGTTATGCTGCTAAACGAAGGCGC
CGAATTTCGGTGCATGTACCTCCTTTTGGTAATGGCCATATTTTGGGTTA
CGGAAGCCTTGCCTCTCTATGTGACGTCCATGATACCGATTGTGGCCTTC
CCAATAATGGGTATAATGAGCTCGGATCAGACTTGCCGCTTGTACTTCAA
GGATACGCTGGTGATGTTCATGGGCGGCATTATGGTCGCCCTGGCTGTGG
AGTACTGTAATCTACACAAACGTCTTGCCTTGAGGGTAATCCAGATCGTG
GGCTGCAGTCCCCGCAGATTACACTTTGGCCTCATCATGGTTACAATGTT
TTTGAGCATGTGGATTTCGAACGCCGCCTGTACTGCCATGATGTGTCCGA
TTATCCAAGCCGTGCTGGAGGAGCTGCAGGCTCAGGGTGTCTGCAAAATC
AACCATGAGCCTCAATACCAAATCGTTGGAGGCAACAAGAAAAACAACGA
GGATGAGCCACCATACCCCACCAAGATCACTCTGTGCTACTATCTGGGCA
TTGCCTACGCCTCCTCGCTGGGTGGCTGTGGAACCATCATCGGAACTGCC
ACCAATCTTACCTTCAAGGGCATCTACGAGGCTCGTTTCAAGAACTCCAC
CGAACAGATGGACTTCCCCACCTTCATGTTCTACTCGGTGCCATCCATGT
TGGTCTACACCTTGCTGACATTCGTGTTCCTGCAATGGCACTTCATGGGT
CTGTGGCGTCCCAAGAGCAAGGAGGCACAGGAAGTCCAGAGGGGACGAGA
GGGCGCCGATGTCGCCAAAAAGGTTATCGATCAGCGCTACAAGGATCTGG
GTCCCATGTCCATTCACGAGATCCAAGTGATGATTCTGTTCATTTTTATG
GTTGTGATGTACTTCACCCGCAAGCCCGGCATCTTTTTGGGATGGGCCGA
TTTGCTGAATTCCAAGGACATTCGTAACTCTATGCCCACTATTTTTGTCG
TCGTCATGTGCTTCATGCTGCCCGCCAATTATGCTTTCCTACGCTACTGC
ACCAGACGCGGTGGTCCAGTGCCCACGGGTCCCACTCCATCGCTGATCAC
CTGGAAGTTCATCCAGACCAAGGTGCCATGGGGTCTGGTGTTCCTGCTTG
GCGGTGGCTTCGCTTTGGCCGAAGGCAGCAAGCAGAGCGGCATGGCCAAG
CTGATTGGCAATGCTCTGATTGGATTGAAGGTTCTGCCCAACTCTGTCCT
CTTACTGGTGGTCATCCTGGTGGCTGTGTTCCTGACCGCCTTCAGCTCCA
ATGTGGCGATTGCCAACATTATTATTCCCGTTCTGGCCGAGATGTCCCTG
GCCATTGAGATCCATCCTCTGTACCTGATCCTGCCCGCTGGCTTGGCCTG
CAGTATGGCCTTCCACCTGCCGGTTAGTACTCCGCCCAACGCTTTGGTTG
CTGGCTATGCCAACATTAGGACGAAGGACATGGCCATTGCTGGAATCGGT
CCGACCATCATTACCATCATCACCCTGTTTGTTTTCTGCCAAACCTGGGG
CCTGGTCGTCTATCCGAACCTTAACTCGTTCCCCGAATGGGCTCAGATTT
ATGCCGCGGCAGCACTGGGAAACAAGACGCACGCAAGCTTTCTAGACCAT
BO10712.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:11:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Indy-RD | 1719 | CG3979-PD | 1..1716 | 17..1732 | 8580 | 100 | Plus |
Indy-RA | 1719 | CG3979-PA | 1..1716 | 17..1732 | 8580 | 100 | Plus |
Indy-RC | 1719 | CG3979-PC | 1..1716 | 17..1732 | 8580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Indy-RD | 2581 | CG3979-RD | 272..1987 | 17..1732 | 8580 | 100 | Plus |
Indy-RA | 2484 | CG3979-RA | 175..1890 | 17..1732 | 8580 | 100 | Plus |
Indy-RC | 2600 | CG3979-RC | 291..2006 | 17..1732 | 8580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:11:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18830275..18830734 | 1066..607 | 2300 | 100 | Minus |
3L | 28110227 | 3L | 18829579..18829963 | 1444..1060 | 1910 | 99.7 | Minus |
3L | 28110227 | 3L | 18829226..18829514 | 1732..1444 | 1445 | 100 | Minus |
3L | 28110227 | 3L | 18830839..18831035 | 607..411 | 970 | 99.5 | Minus |
3L | 28110227 | 3L | 18831093..18831242 | 417..268 | 750 | 100 | Minus |
3L | 28110227 | 3L | 18831494..18831621 | 152..25 | 640 | 100 | Minus |
3L | 28110227 | 3L | 18831311..18831427 | 268..152 | 585 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 1564..1616 | 1687..1742 | 120 | 71.4 | Plus |
BO10712.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:01 Download gff for
BO10712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Indy-RA | 1..1719 | 17..1733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:18 Download gff for
BO10712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Indy-RA | 147..1869 | 9..1732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:11 Download gff for
BO10712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Indy-RC | 291..2006 | 17..1734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:01 Download gff for
BO10712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Indy-RA | 147..1869 | 9..1732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:01 Download gff for
BO10712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Indy-RC | 291..2006 | 17..1734 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:01 Download gff for
BO10712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18829224..18829513 | 1445..1734 | 99 | <- | Minus |
3L | 18829579..18829957 | 1066..1444 | 100 | <- | Minus |
3L | 18830276..18830734 | 607..1065 | 100 | <- | Minus |
3L | 18830840..18831028 | 418..606 | 100 | <- | Minus |
3L | 18831093..18831241 | 269..417 | 100 | <- | Minus |
3L | 18831311..18831427 | 152..268 | 100 | <- | Minus |
3L | 18831495..18831628 | 17..151 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:11 Download gff for
BO10712.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18822324..18822613 | 1445..1734 | 99 | <- | Minus |
arm_3L | 18822679..18823057 | 1066..1444 | 100 | <- | Minus |
arm_3L | 18823376..18823834 | 607..1065 | 100 | <- | Minus |
arm_3L | 18823940..18824128 | 418..606 | 100 | <- | Minus |
arm_3L | 18824193..18824341 | 269..417 | 100 | <- | Minus |
arm_3L | 18824411..18824527 | 152..268 | 100 | <- | Minus |
arm_3L | 18824595..18824728 | 17..151 | 97 | | Minus |
BO10712.pep Sequence
Translation from 16 to 1750
> BO10712.pep
MEIEIGEQPQPPVKCSNFFANHWKGLVVFLVPLLCLPVMLLNEGAEFRCM
YLLLVMAIFWVTEALPLYVTSMIPIVAFPIMGIMSSDQTCRLYFKDTLVM
FMGGIMVALAVEYCNLHKRLALRVIQIVGCSPRRLHFGLIMVTMFLSMWI
SNAACTAMMCPIIQAVLEELQAQGVCKINHEPQYQIVGGNKKNNEDEPPY
PTKITLCYYLGIAYASSLGGCGTIIGTATNLTFKGIYEARFKNSTEQMDF
PTFMFYSVPSMLVYTLLTFVFLQWHFMGLWRPKSKEAQEVQRGREGADVA
KKVIDQRYKDLGPMSIHEIQVMILFIFMVVMYFTRKPGIFLGWADLLNSK
DIRNSMPTIFVVVMCFMLPANYAFLRYCTRRGGPVPTGPTPSLITWKFIQ
TKVPWGLVFLLGGGFALAEGSKQSGMAKLIGNALIGLKVLPNSVLLLVVI
LVAVFLTAFSSNVAIANIIIPVLAEMSLAIEIHPLYLILPAGLACSMAFH
LPVSTPPNALVAGYANIRTKDMAIAGIGPTIITIITLFVFCQTWGLVVYP
NLNSFPEWAQIYAAAALGNKTHASFLDH
BO10712.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Indy-PD | 572 | CG3979-PD | 1..572 | 1..572 | 2994 | 100 | Plus |
Indy-PA | 572 | CG3979-PA | 1..572 | 1..572 | 2994 | 100 | Plus |
Indy-PC | 572 | CG3979-PC | 1..572 | 1..572 | 2994 | 100 | Plus |
Indy-PB | 590 | CG3979-PB | 19..590 | 1..572 | 2994 | 100 | Plus |
CG33934-PE | 556 | CG33934-PE | 16..555 | 14..559 | 1531 | 51.3 | Plus |