Clone BO10712 Report

Search the DGRC for BO10712

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:107
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptIndy-RA
Protein status:BO10712.pep: validated not full length
Sequenced Size:1750

Clone Sequence Records

BO10712.3prime Sequence

908 bp (860 high quality bases) assembled on 2006-04-19

> BO10712.3prime
ATGGTCTAGAAAGCTTGCGTGCGTCTTGTTTCCCAGTGCTGCCGCGGCAT
AAATCTGAGCCCATTCGGGGAACGAGTTAAGGTTCGGATAGACGACCAGG
CCCCAGGTTTGGCAGAAAACAAACAGGGTGATGATGGTAATGATGGTCGG
ACCGATTCCAGCAATGGCCATGTCCTTCGTCCTAATGTTGGCATAGCCAG
CAACCAAAGCGTTGGGCGGAGTACTAACCGGCAGGTGGAAGGCCATACTG
CAGGCCAAGCCAGCGGGCAGGATCAGGTACAGAGGATGGATCTCAATGGC
CAGGGACATCTCGGCCAGAACGGGAATAATAATGTTGGCAATCGCCACAT
TGGAGCTGAAGGCGGTCAGGAACACAGCCACCAGGATGACCACCAGTAAG
AGGACAGAGTTGGGCAGAACCTTCAATCCAATCAGAGCATTGCCAATCAG
CTTGGCCATGCCGCTCTGCTTGCTGCCTTCGGCCAAAGCGAAGCCACCGC
CAAGCAGGAACACCAGACCCCATGGCACCTTGGTCTGGATGAACTTCCAG
GTGATCAGCGATGGAGTGGGACCCGTGGGCACTGGACCACCGCGTCTGGT
GCAGTAGCGTAGGAAAGCATAATTGGCGGGCAGCATGAAGCACATGACGA
CGACAAAAATAGTGGGCATAGAGTTACGAATGTCCTTGGAATTCAGCAAA
TCGGCCCATCCCAAAAAGATGCCGGGCTTGCGGGTGAAGTACATCACAAC
CATAAAAATGAACAGAATCATCACTTGGATCTCGTGAATGGACATGGGAC
CCAGATCCTTGTAGCGCTGATCGATAACCTTTTTGGCGACATCGGCGCCC
TCTCGTCCCCTCTGGACTTCCTGTGCCTCCCTGCTCTTGGGACGCCACAG
ACCCATGA

BO10712.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3979-PB 1773 Indy-RB 881..1770 908..19 4425 99.8 Minus
CG3979-PC 1719 Indy-RC 827..1716 908..19 4425 99.8 Minus
CG3979-PA 1719 Indy-RA 827..1716 908..19 4425 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:23:18
Subject Length Description Subject Range Query Range Score Percent Strand
Indy-RD 2581 CG3979-RD 1098..1987 908..19 4435 99.9 Minus
Indy-RA 2484 CG3979-RA 1001..1890 908..19 4435 99.9 Minus
Indy-RC 2600 CG3979-RC 1117..2006 908..19 4435 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18829579..18829963 307..691 1910 99.7 Plus
3L 28110227 3L 18829226..18829514 19..307 1445 100 Plus
3L 28110227 3L 18830275..18830498 685..908 1105 99.6 Plus
Blast to na_te.dros performed 2015-02-09 02:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 1564..1616 64..9 120 71.4 Minus

BO10712.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:57 Download gff for BO10712.3prime
Subject Subject Range Query Range Percent Splice Strand
Indy-PA 828..1719 18..907 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:03:12 Download gff for BO10712.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3979-PA 828..1719 18..907 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:46:09 Download gff for BO10712.3prime
Subject Subject Range Query Range Percent Splice Strand
Indy-RC 1118..2006 19..907 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:20:35 Download gff for BO10712.3prime
Subject Subject Range Query Range Percent Splice Strand
Indy-RC 1118..2006 19..907 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:20:35 Download gff for BO10712.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18829220..18829513 15..306 98 <- Plus
3L 18829579..18829957 307..685 100 <- Plus
3L 18830276..18830497 686..907 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:46:09 Download gff for BO10712.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18822320..18822613 15..306 98 <- Plus
arm_3L 18822679..18823057 307..685 100 <- Plus
arm_3L 18823376..18823597 686..907 99   Plus

BO10712.5prime Sequence

887 bp (814 high quality bases) assembled on 2006-04-19

> BO10712.5prime
GAAGTTATCAGTCGACATGGAAATTGAAATTGGCGAACAACCCCAGCCTC
CGGTGAAGTGCTCCAACTTCTTCGCTAACCACTGGAAGGGATTGGTTGTG
TTCCTGGTGCCGCTGCTATGTCTGCCTGTTATGCTGCTAAACGAAGGCGC
CGAATTTCGGTGCATGTACCTCCTTTTGGTAATGGCCATATTTTGGGTTA
CGGAAGCCTTGCCTCTCTATGTGACGTCCATGATACCGATTGTGGCCTTC
CCAATAATGGGTATAATGAGCTCGGATCAGACTTGCCGCTTGTACTTCAA
GGATACGCTGGTGATGTTCATGGGCGGCATTATGGTCGCCCTGGCTGTGG
AGTACTGTAATCTACACAAACGTCTTGCCTTGAGGGTAATCCAGATCGTG
GGCTGCAGTCCCCGCAGATTACACTTTGGCCTCATCATGGTTACAATGTT
TTTGAGCATGTGGATTTCGAACGCCGCCTGTACTGCCATGATGTGTCCGA
TTATCCAAGCCGTGCTGGAGGAGCTGCAGGCTCAGGGTGTCTGCAAAATC
AACCATGAGCCTCAATACCAAATCGTTGGAGGCAACAAGAAAAACAACGA
GGATGAGCCACCATACCCCACCAAGATCACTCTGTGCTACTATCTGGGCA
TTGCCTACGCCTCCTCGCTGGGTGGCTGTGGAACCATCATCGGAACTGCC
ACCAATCTTACCTTCAAGGGCATCTACGAGGCTCGTTTCAAGAACTCCAC
CGAACAGATGGACTTCCCCACCTTCATGTTCTACTCGGTGCCATCCATGT
TGGTCTACACCTTGCTGACATTCGTGTTCCTGCAATGGCACTTCATGGGT
CTGTGGCGTCCCAAGAGCAAGGAGGCACAGGAAGTCC

BO10712.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3979-PB 1773 Indy-RB 55..925 17..887 4355 100 Plus
CG3979-PC 1719 Indy-RC 1..871 17..887 4355 100 Plus
CG3979-PA 1719 Indy-RA 1..871 17..887 4355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
Indy-RD 2581 CG3979-RD 272..1142 17..887 4355 100 Plus
Indy-RA 2484 CG3979-RA 175..1045 17..887 4355 100 Plus
Indy-RC 2600 CG3979-RC 291..1161 17..887 4355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18830454..18830734 887..607 1405 100 Minus
3L 28110227 3L 18830839..18831035 607..411 970 99.5 Minus
3L 28110227 3L 18831093..18831242 417..268 750 100 Minus
3L 28110227 3L 18831494..18831621 152..25 640 100 Minus
3L 28110227 3L 18831311..18831427 268..152 585 100 Minus
Blast to na_te.dros performed on 2015-02-10 04:10:23 has no hits.

BO10712.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:46:58 Download gff for BO10712.5prime
Subject Subject Range Query Range Percent Splice Strand
Indy-PA 1..871 17..887 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:03:14 Download gff for BO10712.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3979-PA 1..871 17..887 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:42:58 Download gff for BO10712.5prime
Subject Subject Range Query Range Percent Splice Strand
Indy-RC 284..1161 9..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:20:42 Download gff for BO10712.5prime
Subject Subject Range Query Range Percent Splice Strand
Indy-RC 284..1161 9..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:20:42 Download gff for BO10712.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18830454..18830734 607..887 100 <- Minus
3L 18830840..18831028 418..606 100 <- Minus
3L 18831093..18831241 269..417 100 <- Minus
3L 18831311..18831427 152..268 100 <- Minus
3L 18831495..18831621 25..151 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:42:58 Download gff for BO10712.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18823554..18823834 607..887 100 <- Minus
arm_3L 18823940..18824128 418..606 100 <- Minus
arm_3L 18824193..18824341 269..417 100 <- Minus
arm_3L 18824411..18824527 152..268 100 <- Minus
arm_3L 18824595..18824721 25..151 100 <- Minus

BO10712.complete Sequence

1750 bp (1750 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631853

> BO10712.complete
GAAGTTATCAGTCGACATGGAAATTGAAATTGGCGAACAACCCCAGCCTC
CGGTGAAGTGCTCCAACTTCTTCGCTAACCACTGGAAGGGATTGGTTGTG
TTCCTGGTGCCGCTGCTATGTCTGCCTGTTATGCTGCTAAACGAAGGCGC
CGAATTTCGGTGCATGTACCTCCTTTTGGTAATGGCCATATTTTGGGTTA
CGGAAGCCTTGCCTCTCTATGTGACGTCCATGATACCGATTGTGGCCTTC
CCAATAATGGGTATAATGAGCTCGGATCAGACTTGCCGCTTGTACTTCAA
GGATACGCTGGTGATGTTCATGGGCGGCATTATGGTCGCCCTGGCTGTGG
AGTACTGTAATCTACACAAACGTCTTGCCTTGAGGGTAATCCAGATCGTG
GGCTGCAGTCCCCGCAGATTACACTTTGGCCTCATCATGGTTACAATGTT
TTTGAGCATGTGGATTTCGAACGCCGCCTGTACTGCCATGATGTGTCCGA
TTATCCAAGCCGTGCTGGAGGAGCTGCAGGCTCAGGGTGTCTGCAAAATC
AACCATGAGCCTCAATACCAAATCGTTGGAGGCAACAAGAAAAACAACGA
GGATGAGCCACCATACCCCACCAAGATCACTCTGTGCTACTATCTGGGCA
TTGCCTACGCCTCCTCGCTGGGTGGCTGTGGAACCATCATCGGAACTGCC
ACCAATCTTACCTTCAAGGGCATCTACGAGGCTCGTTTCAAGAACTCCAC
CGAACAGATGGACTTCCCCACCTTCATGTTCTACTCGGTGCCATCCATGT
TGGTCTACACCTTGCTGACATTCGTGTTCCTGCAATGGCACTTCATGGGT
CTGTGGCGTCCCAAGAGCAAGGAGGCACAGGAAGTCCAGAGGGGACGAGA
GGGCGCCGATGTCGCCAAAAAGGTTATCGATCAGCGCTACAAGGATCTGG
GTCCCATGTCCATTCACGAGATCCAAGTGATGATTCTGTTCATTTTTATG
GTTGTGATGTACTTCACCCGCAAGCCCGGCATCTTTTTGGGATGGGCCGA
TTTGCTGAATTCCAAGGACATTCGTAACTCTATGCCCACTATTTTTGTCG
TCGTCATGTGCTTCATGCTGCCCGCCAATTATGCTTTCCTACGCTACTGC
ACCAGACGCGGTGGTCCAGTGCCCACGGGTCCCACTCCATCGCTGATCAC
CTGGAAGTTCATCCAGACCAAGGTGCCATGGGGTCTGGTGTTCCTGCTTG
GCGGTGGCTTCGCTTTGGCCGAAGGCAGCAAGCAGAGCGGCATGGCCAAG
CTGATTGGCAATGCTCTGATTGGATTGAAGGTTCTGCCCAACTCTGTCCT
CTTACTGGTGGTCATCCTGGTGGCTGTGTTCCTGACCGCCTTCAGCTCCA
ATGTGGCGATTGCCAACATTATTATTCCCGTTCTGGCCGAGATGTCCCTG
GCCATTGAGATCCATCCTCTGTACCTGATCCTGCCCGCTGGCTTGGCCTG
CAGTATGGCCTTCCACCTGCCGGTTAGTACTCCGCCCAACGCTTTGGTTG
CTGGCTATGCCAACATTAGGACGAAGGACATGGCCATTGCTGGAATCGGT
CCGACCATCATTACCATCATCACCCTGTTTGTTTTCTGCCAAACCTGGGG
CCTGGTCGTCTATCCGAACCTTAACTCGTTCCCCGAATGGGCTCAGATTT
ATGCCGCGGCAGCACTGGGAAACAAGACGCACGCAAGCTTTCTAGACCAT

BO10712.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
Indy-RD 1719 CG3979-PD 1..1716 17..1732 8580 100 Plus
Indy-RA 1719 CG3979-PA 1..1716 17..1732 8580 100 Plus
Indy-RC 1719 CG3979-PC 1..1716 17..1732 8580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
Indy-RD 2581 CG3979-RD 272..1987 17..1732 8580 100 Plus
Indy-RA 2484 CG3979-RA 175..1890 17..1732 8580 100 Plus
Indy-RC 2600 CG3979-RC 291..2006 17..1732 8580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18830275..18830734 1066..607 2300 100 Minus
3L 28110227 3L 18829579..18829963 1444..1060 1910 99.7 Minus
3L 28110227 3L 18829226..18829514 1732..1444 1445 100 Minus
3L 28110227 3L 18830839..18831035 607..411 970 99.5 Minus
3L 28110227 3L 18831093..18831242 417..268 750 100 Minus
3L 28110227 3L 18831494..18831621 152..25 640 100 Minus
3L 28110227 3L 18831311..18831427 268..152 585 100 Minus
Blast to na_te.dros performed 2014-11-28 00:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 1564..1616 1687..1742 120 71.4 Plus

BO10712.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:01 Download gff for BO10712.complete
Subject Subject Range Query Range Percent Splice Strand
Indy-RA 1..1719 17..1733 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:18 Download gff for BO10712.complete
Subject Subject Range Query Range Percent Splice Strand
Indy-RA 147..1869 9..1732 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:11 Download gff for BO10712.complete
Subject Subject Range Query Range Percent Splice Strand
Indy-RC 291..2006 17..1734 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:01 Download gff for BO10712.complete
Subject Subject Range Query Range Percent Splice Strand
Indy-RA 147..1869 9..1732 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:01 Download gff for BO10712.complete
Subject Subject Range Query Range Percent Splice Strand
Indy-RC 291..2006 17..1734 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:01 Download gff for BO10712.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18829224..18829513 1445..1734 99 <- Minus
3L 18829579..18829957 1066..1444 100 <- Minus
3L 18830276..18830734 607..1065 100 <- Minus
3L 18830840..18831028 418..606 100 <- Minus
3L 18831093..18831241 269..417 100 <- Minus
3L 18831311..18831427 152..268 100 <- Minus
3L 18831495..18831628 17..151 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:11 Download gff for BO10712.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18822324..18822613 1445..1734 99 <- Minus
arm_3L 18822679..18823057 1066..1444 100 <- Minus
arm_3L 18823376..18823834 607..1065 100 <- Minus
arm_3L 18823940..18824128 418..606 100 <- Minus
arm_3L 18824193..18824341 269..417 100 <- Minus
arm_3L 18824411..18824527 152..268 100 <- Minus
arm_3L 18824595..18824728 17..151 97   Minus

BO10712.pep Sequence

Translation from 16 to 1750

> BO10712.pep
MEIEIGEQPQPPVKCSNFFANHWKGLVVFLVPLLCLPVMLLNEGAEFRCM
YLLLVMAIFWVTEALPLYVTSMIPIVAFPIMGIMSSDQTCRLYFKDTLVM
FMGGIMVALAVEYCNLHKRLALRVIQIVGCSPRRLHFGLIMVTMFLSMWI
SNAACTAMMCPIIQAVLEELQAQGVCKINHEPQYQIVGGNKKNNEDEPPY
PTKITLCYYLGIAYASSLGGCGTIIGTATNLTFKGIYEARFKNSTEQMDF
PTFMFYSVPSMLVYTLLTFVFLQWHFMGLWRPKSKEAQEVQRGREGADVA
KKVIDQRYKDLGPMSIHEIQVMILFIFMVVMYFTRKPGIFLGWADLLNSK
DIRNSMPTIFVVVMCFMLPANYAFLRYCTRRGGPVPTGPTPSLITWKFIQ
TKVPWGLVFLLGGGFALAEGSKQSGMAKLIGNALIGLKVLPNSVLLLVVI
LVAVFLTAFSSNVAIANIIIPVLAEMSLAIEIHPLYLILPAGLACSMAFH
LPVSTPPNALVAGYANIRTKDMAIAGIGPTIITIITLFVFCQTWGLVVYP
NLNSFPEWAQIYAAAALGNKTHASFLDH

BO10712.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
Indy-PD 572 CG3979-PD 1..572 1..572 2994 100 Plus
Indy-PA 572 CG3979-PA 1..572 1..572 2994 100 Plus
Indy-PC 572 CG3979-PC 1..572 1..572 2994 100 Plus
Indy-PB 590 CG3979-PB 19..590 1..572 2994 100 Plus
CG33934-PE 556 CG33934-PE 16..555 14..559 1531 51.3 Plus