Clone Sequence Records
BO10718.3prime Sequence
995 bp (866 high quality bases) assembled on 2006-04-19
> BO10718.3prime
ATGGTCTAGAAAGCTTGCGTTGTTCTTGTGGTCCTCGAAGTAGGAAGGTA
GCTCTGCTTGGAGGCGCAACAAACGGACGTAGGTCAGCAGTTTCCATTCG
CTCAGCGGCTGATCCTCGGGATGCACGAAGGTGGACATGTATGTGACTAG
CTCCTGAGATCCGTCCTGGTCGAGATCTGCGACAAGCATCGAGTGGTCCT
GGTTGTTCAGATCCGGTTGGCACACCACCTCCTTGCGGTCGTGACGGCAA
AACTGGACGATGTTGCTTCGCGAGGTGTTCTCAATGTGGGTATCGGCCCC
CACGAAAACCACTAGCAGCACGGTTTCTGTAATCATGTTCATTTTGTAGC
TTCCGCCGGGAGAGATTCCACTCGATTTGGTCAGGTTCATAGTTGAAGAT
GGCAGTCCGAATGATTCCCTCTTCTGCTTCACATGCTCGAAGAAATCGAA
CTCCTGGTGAGCCGGTTGAAACTCTTGATCTTTCGCCTCCGTGCTTCTTC
TTAGACGTTGGTGCTGCTGTTGTTTCTTTGCCTGAGCCTGAGACTTTTCT
TTATCCTTGATGGCATTCATGTTCTTGGTGTGATTGTTGCTGCCACTCTT
CTGCACATTGTTGCTGTTACTGCTGGCGGAAGTCTGTTTGGAAGGCTTAG
CCAAGCCATGCCACTTCCAGAACTTCATCACAAAGCCGGACATTTGCGAC
TTGGTATTCTTGAAGTGCCATTCGGCGGGCTTCATCCCGTACATTCTGCT
CGTGATGAAGTTTTCCACCACATGGGGTTTGCCATCGCGGACTTCACTGA
GAACAAAGGTAACATTGCAATCCTCCGGACAGCGTCCTCGGTTCTCCACC
ACGAGTTCCCGTCCACTTTAAGATATATGTTCCTCTGGGCATCCAGTTCC
CGCCGCTGGCCATGGTTCCTATGCTGGGAGATCTTTGAGGTGCCTAGTCG
TTGGCTACAATAGATTTTGTGGTGATCAGGGGATACAGCTCGGCC
BO10718.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3618-PA | 2280 | CG3618-RA | 1428..2277 | 868..19 | 4250 | 100 | Minus |
| CG3618-PA | 2280 | CG3618-RA | 1339..1422 | 956..873 | 420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:06:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3618-RB | 2559 | CG3618-RB | 1411..2389 | 995..19 | 4785 | 99.4 | Minus |
| CG3618-RA | 2589 | CG3618-RA | 1441..2419 | 995..19 | 4785 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:06:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20813523..20814501 | 19..995 | 4735 | 99.4 | Plus |
Blast to na_te.dros performed 2015-02-11 11:06:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2504 | 625..451 | 193 | 60.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2473 | 620..455 | 168 | 58 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6912 | 625..492 | 155 | 61 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2509 | 625..492 | 131 | 58.5 | Minus |
BO10718.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:47:07 Download gff for
BO10718.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-PA | 1299..2280 | 18..995 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:03:24 Download gff for
BO10718.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-PA | 1299..2280 | 18..995 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:27:07 Download gff for
BO10718.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-RA | 1441..2419 | 19..995 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:37:49 Download gff for
BO10718.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-RA | 1441..2419 | 19..995 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:37:49 Download gff for
BO10718.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20813523..20814501 | 19..995 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:27:07 Download gff for
BO10718.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20806623..20807601 | 19..995 | 99 | | Plus |
BO10718.5prime Sequence
912 bp (831 high quality bases) assembled on 2006-04-19
> BO10718.5prime
GAAGTTATCAGTCGACATGCTGCACTCCGAATTATTGCCCCCCGCTGGCC
ACCAGGGCATCTATGCTCCACTAAGTCAGGCAATGAGCGATTCTGAATCC
GACGAGGAAATTGAGATCCACAACGCCGCCAATCATCGACAAAAATTGCA
ACAGAAACTTAAGCAAGCTCATCAGCCCAGTCCGCCGGAGCAGCTCCAAG
CCCAAAGGATACGCATCCCGCCGAACACTCTAGCCCTGAAATCACCACAT
ACGAGAGCATCTCCCACGGCCACCAGGATTGTGACTCGAAAACCTTCCGG
GAGTACCCAGAAATTCCAACTGGAGGGCAGTAGCTACGCTACCAATATGC
AGAATACTTTCCGTTCCGTCATGTTGAGCGATAATGGTGGAGTGGGATCG
GAGTTGTCCCACTTCAACAGTGATTTCGATGCGAATGCAGACAATGTAGC
CATCTTGGGGGACCATAATCAGACCGGCGAGGATTTGTCCAAAAGAACCC
CCATGTCACCGGCAAGGAAATGCTGTTTCATAGGCAGCCTGCTCCTGTGC
TTCCTCGCCGTCGTATCCTTTGTATGGCTGGTGCCCTGCGGTAATCCTGA
TGGCACTGGATCCTGTCCAGCCGTCGGAGACCGGATAAAGACCCACAACT
GGTTCAATAATTACACAAAGGCGGAACTTAAGGGAGGAATCAATGTGGTC
GGTGGTCTAAGAGCCTGGGAGAACAACCTGATATTTATGTACCGCGGGGA
TGCCTTTTTCCCGGAATTCCGACCAGGTAACGAGCGGCGTAATGGCATCA
TCTGTTTGATTGGCTCCTCGGGAGCTGTGGCTTGGTTTGTGGAGATGGTT
GATGAGCCCTGTGGCCTGGACTGCACCCTCATAGACATAGATGGCAATGG
GGAAACAGCTTG
BO10718.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3618-PA | 2280 | CG3618-RA | 1..842 | 17..858 | 4210 | 100 | Plus |
| CG3618-PA | 2280 | CG3618-RA | 849..896 | 865..912 | 190 | 95.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3618-RB | 2559 | CG3618-RB | 113..1008 | 17..912 | 4405 | 99.6 | Plus |
| CG3618-RA | 2589 | CG3618-RA | 143..1038 | 17..912 | 4405 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20814904..20815799 | 912..17 | 4375 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:18:46 has no hits.
BO10718.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:47:08 Download gff for
BO10718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-PA | 1..896 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:03:26 Download gff for
BO10718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-PA | 1..896 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:14:14 Download gff for
BO10718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-RA | 143..1038 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:36:11 Download gff for
BO10718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-RA | 143..1038 | 17..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:36:11 Download gff for
BO10718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20814904..20815807 | 9..912 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:14:14 Download gff for
BO10718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20808004..20808907 | 9..912 | 99 | | Minus |
BO10718.complete Sequence
2311 bp (2311 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631854
> BO10718.complete
GAAGTTATCAGTCGACATGCTGCACTCCGAATTATTGCCCCCCGCTGGCC
ACCAGGGCATCTATGCTCCACTAAGTCAGGCAATGAGCGATTCTGAATCC
GACGAGGAAATTGAGATCCACAACGCCGCCAATCATCGACAAAAATTGCA
ACAGAAACTTAAGCAAGCTCATCAGCCCAGTCCGCCGGAGCAGCTCCAAG
CCCAAAGGATACGCATCCCGCCGAACACTCTAGCCCTGAAATCACCACAT
ACGAGAGCATCTCCCACGGCCACCAGGATTGTGACTCGAAAACCTTCCGG
GAGTACCCAGAAATTCCAACTGGAGGGCAGTAGCTACGCTACCAATATGC
AGAATACTTTCCGTTCCGTCATGTTGAGCGATAATGGTGGAGTGGGATCG
GAGTTGTCCCACTTCAACAGTGATTTCGATGCGAATGCAGACAATGTAGC
CATCTTGGGGGACCATAATCAGACCGGCGAGGATTTGTCCAAAAGAACCC
CCATGTCACCGGCAAGGAAATGCTGTTTCATAGGCAGCCTGCTCCTGTGC
TTCCTCGCCGTCGTATCCTTTGTATGGCTGGTGCCCTGCGGTAATCCTGA
TGGCACTGGATCCTGTCCAGCCGTCGGAGACCGGATAAAGACCCACAACT
GGTTCAATAATTACACAAAGGCGGAACTTAAGGGAGGAATCAATGTGGTC
GGTGGTCTAAGAGCCTGGGAGAACAACCTGATATTTATGTACCGCGGGGA
TGCCTTTTTCCCGGAATTCCGACCAGGTAACGAGCGGCGTAATGGCATCA
TCTGTTTGATTGGCTCCTCGGGAGCTGTGGCTTGGTTTGTGGAGATGGTT
GATGAGCCTGTGGCCCTGGACTGCACCCTCATAGACATAGATGGCAATGG
GAAACCAGCTTGCTTGGTACTGGATGAGTATGGCGAACTTGGAGCCATTC
ATCCCGTCTCTGGTGAATGGATCTGGTGGCATAAGGAGCGATCAGCCCGA
AAAGTTGATGCCTATGACTTCCCAGTTATCCTGCCTGATCTGGATGCAGA
TGGAGTGCTGGACCTCCTGCTCGTGACTAGTTTGTCACTGGTACAGCGCA
CTAAATCGCTTGCCCAGCTCAAACATGAATCTCCGGAAAAACTAGAGGCT
CGCAATGTGCTGCGCATGCTGTCGGGCAGAAGAGGAGCACCTATTGGTGA
TGGCTTCACCATTCACGACTGCGACACTCTCAGCAACTTGAAGCTCGAGG
CGGGCAACGTGAGCTTCACCTGTCAGCGAGTCAATGACACAGAGCAGCAG
CGTTCCAAGAGTCTGGCCGAGCTGTATGCCCTGATCACCAACAAATCTAT
TGTAAGCCAACGACTAGGCACCTCAAAGATCTCCCAGCATAGGAACCATG
GCCAGCGGCGGGAACTGGATGCCCAGAGGAACATATATTCTTTAAGTGGA
CGGGAACTCGTGGTGGAGAACCGAGGACGCTGTCCGGAGGATTGCAATGT
TACCTTTGTTCTCAGTGAAGTCCGCGATGGCAAACCCCATGTGGTGGAAA
ACTTCATCACGAGCAGAATGTACGGGATGAAGCCCGCCGAATGGCACTTC
AAGAATACCAAGTCGCAAATGTCCGGCTTTGTGATGAAGTTCTGGAAGTG
GCATGGCTTGGCTAAGCCTTCCAAACAGACTTCCGCCAGCAGTAACAGCA
ACAATGTGCAGAAGAGTGGCAGCAACAATCACACCAAGAACATGAATGCC
ATCAAGGATAAAGAAAAGTCTCAGGCTCAGGCAAAGAAACAACAGCAGCA
CCAACGTCTAAGAAGAAGCACGGAGGCGAAAGATCAAGAGTTTCAACCGG
CTCACCAGGAGTTCGATTTCTTCGAGCATGTGAAGCAGAAGAGGGAATCA
TTCGGACTGCCATCTTCAACTATGAACCTGACCAAATCGAGTGGAATCTC
TCCCGGCGGAAGCTACAAAATGAACATGATTACAGAAACCGTGCTGCTAG
TGGTTTTCGTGGGGGCCGATACCCACATTGAGAACACCTCGCGAAGCAAC
ATCGTCCAGTTTTGCCGTCACGACCGCAAGGAGGTGGTGTGCCAACCGGA
TCTGAACAACCAGGACCACTCGATGCTTGTCGCAGATCTCGACCAGGACG
GATCTCAGGAGCTAGTCACATACATGTCCACCTTCGTGCATCCCGAGGAT
CAGCCGCTGAGCGAATGGAAACTGCTGACCTACGTCCGTTTGTTGCGCCT
CCAAGCAGAGCTACCTTCCTACTTCGAGGACCACAAGAACAACGCAAGCT
TTCTAGACCAT
BO10718.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:10:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3618-RB | 2280 | CG3618-PB | 1..2277 | 17..2293 | 11385 | 100 | Plus |
| CG3618-RA | 2280 | CG3618-PA | 1..2277 | 17..2293 | 11385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3618-RB | 2559 | CG3618-RB | 113..2389 | 17..2293 | 11385 | 100 | Plus |
| CG3618-RA | 2589 | CG3618-RA | 143..2419 | 17..2293 | 11385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20813523..20815799 | 2293..17 | 11385 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 16:10:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2504 | 1687..1861 | 193 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6912 | 1687..1820 | 155 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2509 | 1687..1820 | 131 | 58.5 | Plus |
BO10718.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:02 Download gff for
BO10718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-RA | 1..2280 | 17..2294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:20 Download gff for
BO10718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-RA | 140..2416 | 17..2293 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:23 Download gff for
BO10718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-RA | 143..2419 | 17..2295 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:02 Download gff for
BO10718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-RA | 140..2416 | 17..2293 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:38 Download gff for
BO10718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3618-RA | 143..2419 | 17..2295 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:38 Download gff for
BO10718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20813521..20815799 | 17..2295 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:23 Download gff for
BO10718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20806621..20808899 | 17..2295 | 99 | | Minus |
BO10718.pep Sequence
Translation from 16 to 2311
> BO10718.pep
MLHSELLPPAGHQGIYAPLSQAMSDSESDEEIEIHNAANHRQKLQQKLKQ
AHQPSPPEQLQAQRIRIPPNTLALKSPHTRASPTATRIVTRKPSGSTQKF
QLEGSSYATNMQNTFRSVMLSDNGGVGSELSHFNSDFDANADNVAILGDH
NQTGEDLSKRTPMSPARKCCFIGSLLLCFLAVVSFVWLVPCGNPDGTGSC
PAVGDRIKTHNWFNNYTKAELKGGINVVGGLRAWENNLIFMYRGDAFFPE
FRPGNERRNGIICLIGSSGAVAWFVEMVDEPVALDCTLIDIDGNGKPACL
VLDEYGELGAIHPVSGEWIWWHKERSARKVDAYDFPVILPDLDADGVLDL
LLVTSLSLVQRTKSLAQLKHESPEKLEARNVLRMLSGRRGAPIGDGFTIH
DCDTLSNLKLEAGNVSFTCQRVNDTEQQRSKSLAELYALITNKSIVSQRL
GTSKISQHRNHGQRRELDAQRNIYSLSGRELVVENRGRCPEDCNVTFVLS
EVRDGKPHVVENFITSRMYGMKPAEWHFKNTKSQMSGFVMKFWKWHGLAK
PSKQTSASSNSNNVQKSGSNNHTKNMNAIKDKEKSQAQAKKQQQHQRLRR
STEAKDQEFQPAHQEFDFFEHVKQKRESFGLPSSTMNLTKSSGISPGGSY
KMNMITETVLLVVFVGADTHIENTSRSNIVQFCRHDRKEVVCQPDLNNQD
HSMLVADLDQDGSQELVTYMSTFVHPEDQPLSEWKLLTYVRLLRLQAELP
SYFEDHKNNASFLDH
BO10718.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:35:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3618-PB | 759 | CG3618-PB | 1..759 | 1..759 | 4001 | 100 | Plus |
| CG3618-PA | 759 | CG3618-PA | 1..759 | 1..759 | 4001 | 100 | Plus |
