Clone Sequence Records
BO10719.3prime Sequence
984 bp (821 high quality bases) assembled on 2006-04-19
> BO10719.3prime
ATGGTCTAGAAAGCTTGCGACTCTGAGTGTCATGGCATCGGCCTCGACTC
CCAGCTTCTGTTGCTCCAGCTCCAGCTGCATCTGCTGCTGCTCCTGCTGG
AGCTCTTGATCCTCCTCCGTCTCCTCCAGAACCTCGCTCCTCTCCTCGTC
ACTGCTGCTTGGCGCTGGCGAGCTGAGCGTCACATCGCTGCCCAGGGCCA
ACAGTGGCTGGACATCCATGTCGGGAGCAAACTGCTTCAGCAGTTGTCCC
ACCACGGTGCACAGTCCCATCAGACGCTTCTCCATTCGCTGCTCGTAGCG
ACGGCGGTGCCTGTAATACTTCTCCTTTTCGCTGAGACCTTTGCGATGGT
GTTTCCTTAACAATTTACGCGCCTTCGGGATAGGCTTCTCCGGCTTCTCG
CTCTTCACAGCCGTTGCCGTGGGCACTGTCGCCTCCTCGAAGTCGTTGTA
TCTGCTGTTGGATAGCGACACCTCGCCGCCAATCATCACCGGGCCGCATT
CCATTTCGTGGCAGTTGGTGTTGCTCAGCATGCACACATCCTCGCCGTCG
CCAACTGCCGCATCCTTGCGCGCCGTCGCCTCGGCCAGCAGCCTGTCCAG
CTCATCGTTGTTGCTGTGGCCACTGTTCCCGTGGCAGGGCGACGTGTTGG
ACTCGTCCATGTCATCGGTGTCGCATCCGTTGGGCGGCGAGCGTTCGCCA
AAGTTGTGGTCATTGAGCACGCCCAGCATGAGTGGCGAGAGTTGCGCCTC
GTCGCAGGAGTAGACACTGGCGATGGCCAGGTTATTGTTCGGCTGCTCCA
CATTCGGCTCCTTGAGCGCGTACGAGTGCAGGTCGGCGGTCTTCTGGTTC
ATGTAGGCGTGGATGAGGCCGAAAAAACTCCATTCCTTGTTCAGCTCCTC
GATGCTCTGCTTGTTGAGTGGGACGCCCAGTGTGTTGGCCTTGTGGATGC
GGTACCGCTGCACCATGGAAAACCACTGCTTGCG
BO10719.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8010-PA | 1152 | CG8010-RA | 292..1149 | 876..19 | 4290 | 100 | Minus |
CG8010-PA | 1152 | CG8010-RA | 184..288 | 984..880 | 500 | 99 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:21:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8010-RA | 1633 | CG8010-RA | 364..1329 | 984..19 | 4770 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:21:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19267317..19267991 | 310..984 | 3315 | 99.4 | Plus |
X | 23542271 | X | 19266960..19267254 | 19..313 | 1475 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 16:21:51 has no hits.
BO10719.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:47:09 Download gff for
BO10719.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8010-PA | 184..1152 | 16..984 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:03:27 Download gff for
BO10719.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8010-PA | 184..1152 | 16..984 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:26:04 Download gff for
BO10719.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8010-RA | 364..1334 | 13..984 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:53:21 Download gff for
BO10719.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8010-RA | 364..1334 | 13..984 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:53:21 Download gff for
BO10719.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19266955..19267251 | 13..310 | 98 | <- | Plus |
X | 19267318..19267991 | 311..984 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:26:04 Download gff for
BO10719.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19160988..19161284 | 13..310 | 98 | <- | Plus |
arm_X | 19161351..19162024 | 311..984 | 99 | | Plus |
BO10719.5prime Sequence
941 bp (808 high quality bases) assembled on 2006-04-19
> BO10719.5prime
GAAGTTATCAGTCGACATGGACCACCACACGTACGCCAAGAGCGGATCCA
AGAAGTGGTCCGCGGAAGAGAAGCGCAACCTGGTGGTGCAGCGGATCGCG
GCGGACGAGCTCTTCTCCCGCTACTCACCGAAGCACGCGGAGCCATGGAA
AAAATTCAAGGAAATGGCCAAGATCGGCGATTTCAGCGAGATTGCGCTAC
GCAAGCAGTGGTTCTCCATGGTGCAGCGGTACCGCATCCACAAGGCCAAC
ACACTGGGCGTCCCACTCAACAAGCAGAGCATCGAGGAGCTGAACAAGGA
ATGGGAGTTTTTCGGCCTCATCCACGCCTACATGAACCAGAAGACCGCCG
ACCTGCACTCGTACGCGCTCAAGGAGCCGAATGTGGAGCAGCCGAACAAT
AACCTGGCCATCGCCAGTGTCTACTCCTGCGACGAGGCGCAACTCTCGCC
ACTCATGCTGGGCGTGCTCAATGACCACAACTTTGGCGAACGCTCGCCGC
CCAACGGATGCGACACCGATGACATGGACGAGTCCAACACGTCGCCCTGC
CACGGGAACAGTGGCCACAGCAACAACGATGAGCTGGACAGGCTGCTGGC
CGAGGCGACGGCGCGCAAGGATGCGGCAGTTGGCGACGGCGAGGATGTGT
GCATGCTGAGCAACACCAACTGCCACGAAATGGAATGCGGCCCGGTGATG
ATTGGCGGCGAGGTGTCGCTATCCAACAGCAGATACAACGACTTCGAGGA
GGCGACAGTGCCCACGGCAACGGCTGTGAAGAGCGAGAAGCCGGAGAAGC
CTATCCCGAANGCGCGTAAATTGTTAAGGGAACACCATCGCNAAGGTCTC
AGCGAAAAGGGAGAGTATTACAGGCACCGCCGTCGCTACGAGCAGCGAAT
GGAGAAGCGTCTGATGGGACTGTGCACCGTGGTGGGACACT
BO10719.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8010-PA | 1152 | CG8010-RA | 1..844 | 17..860 | 4157 | 99.6 | Plus |
CG8010-PA | 1152 | CG8010-RA | 848..923 | 864..939 | 380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8010-RA | 1633 | CG8010-RA | 179..1103 | 15..939 | 4543 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:48:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19267317..19268040 | 874..151 | 3538 | 99.2 | Minus |
X | 23542271 | X | 19268505..19268598 | 150..57 | 470 | 100 | Minus |
X | 23542271 | X | 19267186..19267254 | 939..871 | 345 | 100 | Minus |
X | 23542271 | X | 19268676..19268718 | 57..15 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:48:07 has no hits.
BO10719.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:47:09 Download gff for
BO10719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8010-PA | 1..926 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:03:29 Download gff for
BO10719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8010-PA | 1..926 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:02:47 Download gff for
BO10719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8010-RA | 169..1106 | 3..941 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:48:52 Download gff for
BO10719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8010-RA | 169..1106 | 3..941 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:48:52 Download gff for
BO10719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19267183..19267251 | 874..941 | 98 | <- | Minus |
X | 19267318..19268040 | 151..873 | 99 | <- | Minus |
X | 19268505..19268598 | 57..150 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:02:47 Download gff for
BO10719.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19161216..19161284 | 874..941 | 98 | <- | Minus |
arm_X | 19161351..19162073 | 151..873 | 99 | <- | Minus |
arm_X | 19162538..19162631 | 57..150 | 100 | <- | Minus |
BO10719.complete Sequence
1183 bp (1183 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631855
> BO10719.complete
GAAGTTATCAGTCGACATGGACCACCACACGTACGCCAAGAGCGGATCCA
AGAAGTGGTCCGCGGAAGAGAAGCGCAACCTGGTGGTGCAGCGGATCGCG
GCGGACGAGCTCTTCTCCCGCTACTCACCGAAGCACGCGGAGCCATGGAA
AAAATTCAAGGAAATGGCCAAGATCGGCGATTTCAGCGAGATTGCGCTAC
GCAAGCAGTGGTTCTCCATGGTGCAGCGGTACCGCATCCACAAGGCCAAC
ACACTGGGCGTCCCACTCAACAAGCAGAGCATCGAGGAGCTGAACAAGGA
ATGGGAGTTTTTCGGCCTCATCCACGCCTACATGAACCAGAAGACCGCCG
ACCTGCACTCGTACGCGCTCAAGGAGCCGAATGTGGAGCAGCCGAACAAT
AACCTGGCCATCGCCAGTGTCTACTCCTGCGACGAGGCGCAACTCTCGCC
ACTCATGCTGGGCGTGCTCAATGACCACAACTTTGGCGAACGCTCGCCGC
CCAACGGATGCGACACCGATGACATGGACGAGTCCAACACGTCGCCCTGC
CACGGGAACAGTGGCCACAGCAACAACGATGAGCTGGACAGGCTGCTGGC
CGAGGCGACGGCGCGCAAGGATGCGGCAGTTGGCGACGGCGAGGATGTGT
GCATGCTGAGCAACACCAACTGCCACGAAATGGAATGCGGCCCGGTGATG
ATTGGCGGCGAGGTGTCGCTATCCAACAGCAGATACAACGACTTCGAGGA
GGCGACAGTGCCCACGGCAACGGCTGTGAAGAGCGAGAAGCCGGAGAAGC
CTATCCCGAAGGCGCGTAAATTGTTAAGGAAACACCATCGCAAAGGTCTC
AGCGAAAAGGAGAAGTATTACAGGCACCGCCGTCGCTACGAGCAGCGAAT
GGAGAAGCGTCTGATGGGACTGTGCACCGTGGTGGGACAACTGCTGAAGC
AGTTTGCTCCCGACATGGATGTCCAGCCACTGTTGGCCCTGGGCAGCGAT
GTGACGCTCAGCTCGCCAGCGCCAAGCAGCAGTGACGAGGAGAGGAGCGA
GGTTCTGGAGGAGACGGAGGAGGATCAAGAGCTCCAGCAGGAGCAGCAGC
AGATGCAGCTGGAGCTGGAGCAACAGAAGCTGGGAGTCGAGGCCGATGCC
ATGACACTCAGAGTCGCAAGCTTTCTAGACCAT
BO10719.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:38:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8010-RA | 1152 | CG8010-PA | 1..1149 | 17..1165 | 5745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8010-RA | 1633 | CG8010-RA | 179..1329 | 15..1165 | 5755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19267317..19268040 | 874..151 | 3620 | 100 | Minus |
X | 23542271 | X | 19266960..19267254 | 1165..871 | 1475 | 100 | Minus |
X | 23542271 | X | 19268505..19268598 | 150..57 | 470 | 100 | Minus |
X | 23542271 | X | 19268676..19268718 | 57..15 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:38:46 has no hits.
BO10719.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:45 Download gff for
BO10719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8010-RA | 1..1152 | 17..1168 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:03 Download gff for
BO10719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8010-RA | 157..1322 | 3..1171 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:40:52 Download gff for
BO10719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8010-RA | 181..1329 | 17..1167 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:45 Download gff for
BO10719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8010-RA | 157..1322 | 3..1171 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:31 Download gff for
BO10719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8010-RA | 181..1329 | 17..1167 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:31 Download gff for
BO10719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19266957..19267251 | 874..1167 | 99 | <- | Minus |
X | 19267318..19268040 | 151..873 | 100 | <- | Minus |
X | 19268505..19268598 | 57..150 | 100 | <- | Minus |
X | 19268677..19268716 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:40:52 Download gff for
BO10719.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19160990..19161284 | 874..1167 | 99 | <- | Minus |
arm_X | 19161351..19162073 | 151..873 | 100 | <- | Minus |
arm_X | 19162538..19162631 | 57..150 | 100 | <- | Minus |
arm_X | 19162710..19162749 | 17..56 | 100 | | Minus |
BO10719.pep Sequence
Translation from 16 to 1183
> BO10719.pep
MDHHTYAKSGSKKWSAEEKRNLVVQRIAADELFSRYSPKHAEPWKKFKEM
AKIGDFSEIALRKQWFSMVQRYRIHKANTLGVPLNKQSIEELNKEWEFFG
LIHAYMNQKTADLHSYALKEPNVEQPNNNLAIASVYSCDEAQLSPLMLGV
LNDHNFGERSPPNGCDTDDMDESNTSPCHGNSGHSNNDELDRLLAEATAR
KDAAVGDGEDVCMLSNTNCHEMECGPVMIGGEVSLSNSRYNDFEEATVPT
ATAVKSEKPEKPIPKARKLLRKHHRKGLSEKEKYYRHRRRYEQRMEKRLM
GLCTVVGQLLKQFAPDMDVQPLLALGSDVTLSSPAPSSSDEERSEVLEET
EEDQELQQEQQQMQLELEQQKLGVEADAMTLRVASFLDH
BO10719.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8010-PA | 383 | CG8010-PA | 1..383 | 1..383 | 2009 | 100 | Plus |