Clone Sequence Records
BO10726.3prime Sequence
813 bp (812 high quality bases) assembled on 2006-04-19
> BO10726.3prime
ATGGTCTAGAAAGCTTGCATAGTTGCGCTTCATTTGACCGGTGGCAAAGA
GCACGTCGAGGATTTTCAGGAACTCCCGGTAGTTGAACTCCATGCACATG
CCCTTCTTCACGCCGAAGCACTTGCAGATCGCTTGGAACTCGCGGCTGCT
CAGCATTACATGCATGTCGCGCACCGTGATGCCGCGCAGGAATTGATTCT
GCGTGATCGAGCCGCACTGTTCGCGATCGAAGTCCTTGAACAGCTGACTC
AGATTGGAGATCTCGTCCGGTTTGCGGGCCAACTTCATCAGGGCCTGCGA
GCAGATGGTTCGCTCGTCGAAGCTCAGGAAGCAGTCGACGCAGTCCAGAT
TGGGCAAATGGAGCAGTGGCACGGCGGTCACCACCTGGTCACCCATGTTC
GTGTCCAGTTGGATGAAGATCTCGTCGAGGGCCTTGCAGAAATCGCGATA
GCGAATGCAGGACACGCGATTCGGTGAACGGAAGATGTTGCACAAGATGT
TAGCTTCCTCTTCCTTGATGATTACACTTGAGTTATCCAGGGCTCGCTTG
AAGTCCGATTCAAGGATCTCGCCCTCGCGATGGCGATCGTAGTCCTTCAT
GAACTCGATGACGGCCACGCTCTTGACCACAGCCTGTCGCTTGGCGTTCG
TAAGGATGCGCACGATCACCTCCTCGCTGACATCCTCGGGATCCAAATTG
TCTCTCGCAAACGGTGGACACTCCACCAGTTGCTGCTTGGTGACCAGCGC
TGGCATGGCATACTCCGCCGGATCGACGTCGTCAAAAACTTGGTGTAGCA
AAAGCCCAGCTCG
BO10726.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:09:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10841-PA | 2187 | CG10841-RA | 1420..2184 | 783..19 | 3825 | 100 | Minus |
CG10841-PA | 2187 | CG10841-RA | 1389..1419 | 813..783 | 155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10841-RB | 2403 | CG10841-RB | 1506..2301 | 813..19 | 3955 | 99.9 | Minus |
CG10841-RA | 2406 | CG10841-RA | 1509..2304 | 813..19 | 3955 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:23:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13634294..13634759 | 484..19 | 2330 | 100 | Minus |
3R | 32079331 | 3R | 13633903..13634232 | 813..485 | 1600 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:23:36 has no hits.
BO10726.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:47:21 Download gff for
BO10726.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-PA | 1389..2187 | 18..813 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:03:44 Download gff for
BO10726.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-PA | 1389..2187 | 18..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:21:14 Download gff for
BO10726.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-RA | 1509..2304 | 19..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:33 Download gff for
BO10726.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-RA | 1509..2304 | 19..813 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:33 Download gff for
BO10726.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13633903..13634232 | 485..813 | 99 | -> | Minus |
3R | 13634294..13634759 | 19..484 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:21:14 Download gff for
BO10726.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9459625..9459954 | 485..813 | 99 | -> | Minus |
arm_3R | 9460016..9460481 | 19..484 | 100 | | Minus |
BO10726.5prime Sequence
854 bp (786 high quality bases) assembled on 2006-04-19
> BO10726.5prime
GAAGTTATCAGTCGACATGCATTCGACCAAGATTAAAGAGGGTGATGACA
GAGAGGAGATGGAGCTAAATCAAATCTGGCGAGGATGTCGTAAAATCCAG
GGCGCCATTTTTCGTTATAACTTTGACATCTGCGCCGACTTAAAGCAGCA
TGATCCCTGTTGCAGTGGCTTCGTGTCCGAGCCCATTTTCACCGCCGTGC
TGGGCAAGTATCGCAAGGTGGCCGGATTGTCCGAGTCGGAACTCCGGGAT
GTCACTGACTATTTCCAAATTCGAGATGGACGCGTAGCGTATCGTCAGTT
CTGCAAGGTCGTCTGCAGCGAAACACTGCATAAGACCGCCAAAAGTGATC
TAGCTACGGGACTGGAGTGGAACGATCCCTGGCATGTGAATGTTGTACCC
CAGCCGGAGGATCGACGACGTCTCTGCCTGATCCTGCTCAAGATTGCCCA
ACTATGCAATATTCCGCTCATGCCCTACTTTCAGGACTACGAACTAATTG
CACAAAATGTTGGAGTTGTTACCGTTGCGCACTTTTCTCGTGTGCTGCAC
TTTATGAAGATACCACTTTCGGAGTCCGATTTTCTGCTCCTCCTCAGACG
CTATATGAAGGATGGTTACCTGGTCAACTATGTGGCTTTCCTCAAGCACA
TCGATAATATTATAGCATACCTGGGCGAGCATCATCTGCTGGACAACTCA
CATGATATTATCAAGGACTTTCCGGGACGTTTAGTGGACCTAGAACTTTC
CCAACTGCCAGCTATTGATGGTTGCAAGGCAGTGCATCCAATCTTTCCCG
ATGCCTGCAGTACACCCAAAAAGAATCGAAATCAGTGCGACATTCTGTTC
TGCA
BO10726.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:09:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10841-PA | 2187 | CG10841-RA | 1..838 | 17..854 | 4190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10841-RA | 2406 | CG10841-RA | 121..958 | 17..854 | 4190 | 100 | Plus |
CG10841-RB | 2403 | CG10841-RB | 121..955 | 17..854 | 4135 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:41:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13632811..13633018 | 497..704 | 1040 | 100 | Plus |
3R | 32079331 | 3R | 13632578..13632750 | 324..496 | 865 | 100 | Plus |
3R | 32079331 | 3R | 13633079..13633229 | 704..854 | 755 | 100 | Plus |
3R | 32079331 | 3R | 13632374..13632518 | 179..323 | 725 | 100 | Plus |
3R | 32079331 | 3R | 13632175..13632301 | 53..179 | 635 | 100 | Plus |
3R | 32079331 | 3R | 13632062..13632098 | 17..53 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:41:58 has no hits.
BO10726.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:47:22 Download gff for
BO10726.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-PA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:03:46 Download gff for
BO10726.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-PA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:53:15 Download gff for
BO10726.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-RA | 121..957 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:53:02 Download gff for
BO10726.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-RA | 121..957 | 17..853 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:53:02 Download gff for
BO10726.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13632062..13632097 | 17..52 | 100 | -> | Plus |
3R | 13632175..13632301 | 53..179 | 100 | -> | Plus |
3R | 13632375..13632518 | 180..323 | 100 | -> | Plus |
3R | 13632578..13632750 | 324..496 | 100 | -> | Plus |
3R | 13632811..13633017 | 497..703 | 100 | -> | Plus |
3R | 13633079..13633228 | 704..853 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:53:15 Download gff for
BO10726.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9457784..9457819 | 17..52 | 100 | -> | Plus |
arm_3R | 9457897..9458023 | 53..179 | 100 | -> | Plus |
arm_3R | 9458097..9458240 | 180..323 | 100 | -> | Plus |
arm_3R | 9458300..9458472 | 324..496 | 100 | -> | Plus |
arm_3R | 9458533..9458739 | 497..703 | 100 | -> | Plus |
arm_3R | 9458801..9458950 | 704..853 | 100 | | Plus |
BO10726.complete Sequence
2218 bp (2218 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631857
> BO10726.complete
GAAGTTATCAGTCGACATGCATTCGACCAAGATTAAAGAGGGTGATGACA
GAGAGGAGATGGAGCTAAATCAAATCTGGCGAGGATGTCGTAAAATCCAG
GGCGCCATTTTTCGTTATAACTTTGACATCTGCGCCGACTTAAAGCAGCA
TGATCCCTGTTGCAGTGGCTTCGTGTCCGAGCCCATTTTCACCGCCGTGC
TGGGCAAGTATCGCAAGGTGGCCGGATTGTCCGAGTCGGAACTCCGGGAT
GTCACTGACTATTTCCAAATTCGAGATGGACGCGTAGCGTATCGTCAGTT
CTGCAAGGTCGTCTGCAGCGAAACACTGCATAAGACCGCCAAAAGTGATC
TAGCTACGGGACTGGAGTGGAACGATCCCTGGCATGTGAATGTTGTACCC
CAGCCGGAGGATCGACGACGTCTCTGCCTGATCCTGCTCAAGATTGCCCA
ACTATGCAATATTCCGCTCATGCCCTACTTTCAGGACTACGAACTAATTG
CACAAAATGTTGGAGTTGTTACCGTTGCGCACTTTTCTCGTGTGCTGCAC
TTTATGAAGATACCACTTTCGGAGTCCGATTTTCTGCTCCTCCTCAGACG
CTATATGAAGGATGGTTACCTGGTCAACTATGTGGCTTTCCTCAAGCACA
TCGATAATATTATAGCATACCTGGGCGAGCATCATCTGCTGGACAACTCA
CATGATATTATCAAGGACTTTCCGGGACGTTTAGTGGACCTAGAACTTTC
CCAACTGCCAGCTATTGATGGTTGCAAGGCAGTGCATCCAATCTTTCCCG
ATGCCTGCAGTACACCCAAAAAGAATCGAAATCAGTGCGACATTCTGTTC
TGCATTCAGAACTACATCTACAAGAACCAAGTGCGCACCTCCGAGTTCCT
AGAGTGCTATGACAGCCTAAACGTGGGCAGCATCACCAAGAATCAATTTG
AGCGCGGTCTATCGAACATGGGAGTGGGAAAATATCTGACCCAAAGGGAA
ATGTCCATTCTGCTGGAACGCTACACTGATCCCGTGGATATCAATCGAGT
GCGTTGGCGCAATTTCGCTGATGAGATCGATACAGTATTCACCATTAAGA
ACCTGGAGAAGATGCCACAGTGTGTCGTGGAATCGCCACTTCGTCACATC
CAGGAGTTGCCCAGACCCGGCGCCGTGCCCTGGGAGTCTGTGTCGGCTAA
TGTTCGTGATCTGTGTGAGGATGCCATGGCCAAGATTAAGATACGCATCC
GCAATCGTCGCCTCTATCTGCATCCATTCTTCCGAAGCTACGATAAACTC
AACAGTGGACATGTGCGTTGCAACATTACCAAGCAGATTTTTCGCACCAA
TGGCATCCTTCTGTCCGATCCGGAGCAGGACTCTGTGCTGAGTCGGTATG
GAAACGAGCTGGGCTTTTGCTACACCAAGTTTTTGGACGACGTCGATCCG
GCGGAGTATGCCATGCCAGCGCTGGTCACCAAGCAGCAACTGGTGGAGTG
TCCACCGTTTGCGAGAGACAATTTGGATCCCGAGGATGTCAGCGAGGAGG
TGATCGTGCGCATCCTTACGAACGCCAAGCGACAGGCTGTGGTCAAGAGC
GTGGCCGTCATCGAGTTCATGAAGGACTACGATCGCCATCGCGAGGGCGA
GATCCTTGAATCGGACTTCAAGCGAGCCCTGGATAACTCAAGTGTAATCA
TCAAGGAAGAGGAAGCTAACATCTTGTGCAACATCTTCCGTTCACCGAAT
CGCGTGTCCTGCATTCGCTATCGCGATTTCTGCAAGGCCCTCGACGAGAT
CTTCATCCAACTGGACACGAACATGGGTGACCAGGTGGTGACCGCCGTGC
CACTGCTCCATTTGCCCAATCTGGACTGCGTCGACTGCTTCCTGAGCTTC
GACGAGCGAACCATCTGCTCGCAGGCCCTGATGAAGTTGGCCCGCAAACC
GGACGAGATCTCCAATCTGAGTCAGCTGTTCAAGGACTTCGATCGCGAAC
AGTGCGGCTCGATCACGCAGAATCAATTCCTGCGCGGCATCACGGTGCGC
GACATGCATGTAATGCTGAGCAGCCGCGAGTTCCAAGCGATCTGCAAGTG
CTTCGGCGTGAAGAAGGGCATGTGCATGGAGTTCAACTACCGGGAGTTCC
TGAAAATCCTCGACGTGCTCTTTGCCACCGGTCAAATGAAGCGCAACTAT
GCAAGCTTTCTAGACCAT
BO10726.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10841-RA | 2187 | CG10841-PA | 1..2184 | 17..2200 | 10920 | 100 | Plus |
CG10841-RB | 2184 | CG10841-PB | 1..2181 | 17..2200 | 10840 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10841-RA | 2406 | CG10841-RA | 121..2304 | 17..2200 | 10920 | 100 | Plus |
CG10841-RB | 2403 | CG10841-RB | 121..2301 | 17..2200 | 10840 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13634294..13634759 | 1735..2200 | 2330 | 100 | Plus |
3R | 32079331 | 3R | 13633795..13634232 | 1297..1734 | 2190 | 100 | Plus |
3R | 32079331 | 3R | 13633079..13633460 | 704..1085 | 1910 | 100 | Plus |
3R | 32079331 | 3R | 13633523..13633735 | 1084..1296 | 1065 | 100 | Plus |
3R | 32079331 | 3R | 13632811..13633018 | 497..704 | 1040 | 100 | Plus |
3R | 32079331 | 3R | 13632578..13632750 | 324..496 | 865 | 100 | Plus |
3R | 32079331 | 3R | 13632374..13632518 | 179..323 | 725 | 100 | Plus |
3R | 32079331 | 3R | 13632175..13632301 | 53..179 | 635 | 100 | Plus |
3R | 32079331 | 3R | 13632062..13632098 | 17..53 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:35:30 has no hits.
BO10726.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:56:55 Download gff for
BO10726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-RA | 1..2187 | 17..2201 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:10 Download gff for
BO10726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-RA | 121..2304 | 17..2200 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:12 Download gff for
BO10726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-RA | 121..2304 | 17..2202 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:56:55 Download gff for
BO10726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-RA | 121..2304 | 17..2200 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:49 Download gff for
BO10726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10841-RA | 121..2304 | 17..2202 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:49 Download gff for
BO10726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13633525..13633735 | 1086..1296 | 100 | -> | Plus |
3R | 13633795..13634232 | 1297..1734 | 100 | -> | Plus |
3R | 13632062..13632097 | 17..52 | 100 | -> | Plus |
3R | 13632175..13632301 | 53..179 | 100 | -> | Plus |
3R | 13632375..13632518 | 180..323 | 100 | -> | Plus |
3R | 13632578..13632750 | 324..496 | 100 | -> | Plus |
3R | 13632811..13633017 | 497..703 | 100 | -> | Plus |
3R | 13633079..13633460 | 704..1085 | 100 | -> | Plus |
3R | 13634294..13634759 | 1735..2202 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:12 Download gff for
BO10726.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9458300..9458472 | 324..496 | 100 | -> | Plus |
arm_3R | 9458533..9458739 | 497..703 | 100 | -> | Plus |
arm_3R | 9457784..9457819 | 17..52 | 100 | -> | Plus |
arm_3R | 9457897..9458023 | 53..179 | 100 | -> | Plus |
arm_3R | 9458097..9458240 | 180..323 | 100 | -> | Plus |
arm_3R | 9458801..9459182 | 704..1085 | 100 | -> | Plus |
arm_3R | 9459247..9459457 | 1086..1296 | 100 | -> | Plus |
arm_3R | 9459517..9459954 | 1297..1734 | 100 | -> | Plus |
arm_3R | 9460016..9460481 | 1735..2202 | 99 | | Plus |
BO10726.pep Sequence
Translation from 16 to 2218
> BO10726.pep
MHSTKIKEGDDREEMELNQIWRGCRKIQGAIFRYNFDICADLKQHDPCCS
GFVSEPIFTAVLGKYRKVAGLSESELRDVTDYFQIRDGRVAYRQFCKVVC
SETLHKTAKSDLATGLEWNDPWHVNVVPQPEDRRRLCLILLKIAQLCNIP
LMPYFQDYELIAQNVGVVTVAHFSRVLHFMKIPLSESDFLLLLRRYMKDG
YLVNYVAFLKHIDNIIAYLGEHHLLDNSHDIIKDFPGRLVDLELSQLPAI
DGCKAVHPIFPDACSTPKKNRNQCDILFCIQNYIYKNQVRTSEFLECYDS
LNVGSITKNQFERGLSNMGVGKYLTQREMSILLERYTDPVDINRVRWRNF
ADEIDTVFTIKNLEKMPQCVVESPLRHIQELPRPGAVPWESVSANVRDLC
EDAMAKIKIRIRNRRLYLHPFFRSYDKLNSGHVRCNITKQIFRTNGILLS
DPEQDSVLSRYGNELGFCYTKFLDDVDPAEYAMPALVTKQQLVECPPFAR
DNLDPEDVSEEVIVRILTNAKRQAVVKSVAVIEFMKDYDRHREGEILESD
FKRALDNSSVIIKEEEANILCNIFRSPNRVSCIRYRDFCKALDEIFIQLD
TNMGDQVVTAVPLLHLPNLDCVDCFLSFDERTICSQALMKLARKPDEISN
LSQLFKDFDREQCGSITQNQFLRGITVRDMHVMLSSREFQAICKCFGVKK
GMCMEFNYREFLKILDVLFATGQMKRNYASFLDH
BO10726.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:50:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10841-PA | 728 | CG10841-PA | 1..728 | 1..728 | 3850 | 100 | Plus |
CG10841-PB | 727 | CG10841-PB | 1..727 | 1..728 | 3833 | 99.9 | Plus |