Clone BO10727 Report

Search the DGRC for BO10727

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:107
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG31904-RB
Protein status:BO10727.pep: validated full length
Sequenced Size:1243

Clone Sequence Records

BO10727.3prime Sequence

915 bp (795 high quality bases) assembled on 2006-04-19

> BO10727.3prime
ATGGTCTAGAAAGCTTGCGGTGCGAGTACCCTGTCTATATATGGCTATAT
ATACAATGTATTTACATAACGTGTTGAGGGGTCTAAAGTTCGACTTCCCC
ATCAATGGCAGTATCCGTGGCAGAGGCAATGGTCCGATCGACAAAGGGAT
TGAAGGCGGTATACTCCTTACAAGGTTCCGGGTGCGGGAGCGGCATTGAT
GGAGGATGTGTCCGGCCAGAGGAGCGGTGTGAATGGCACCACGGGTCTGG
GCAGTGTAGACGCCACTGTGAGCCACTGGGGCCACGACGACTGAGGGAGC
ATGAGCAGCAACCACAGCGGGAGCAGGGGCAGCAAGCACGGCAGGAGCGG
CGGCGTGGATCGCTGCCGGAGGCCACGAAGCCACGTTCACGGCAGCAGGC
CAGTGGGCGGCGGGAACGGCCCAGGGAGAGGCCACCACAGCGGGTCCGGA
AACGGCGGTGTAGGACAGTCCATGTCCAGCCACCTGGGACAGCAGGGGGA
TCACAGACGACTGCACGCCCATGGCGAGGGCCAAGGTGAAGATAACGGCG
ACGGCGAAATCGACGTCGTAGTTCTCGTGCAAGGAACACTCCTGGGTATT
CCAACTATTGTTGCAACTCATCCAGGGTATCACTGGGTGTATTGAATTCA
CGGTATATATGAGGGGCACTACAGCTGCTATACTGTAATAGGTGAGCGTT
CCCAGATTGAGGAGCAGAATGGCGTAGCCAATGCCTTTAAATATTGGCGC
CACGCGAAATGCTGATATGGTTCCAGAACTTGAAAACTGTCCCAAAAAGG
CTTGGATCAAAAATATTGGCAGCGAGTAAAATAGCATTCCCATCAGGTAG
GCGATTATAAACAAAAGCCAACCGCCATGAAGTATTCCAAAAGTGGAGAG
CTCCCAAAAGATCAG

BO10727.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG31904-PD 1212 CG31904-RD 313..1209 915..19 4435 99.7 Minus
CG31904-PB 1212 CG31904-RB 313..1209 915..19 4435 99.7 Minus
CG7216-PA 408 Acp1-RA 7..361 558..204 1775 100 Minus
CG13796-PB 1686 CG13796-RB 313..669 915..559 1735 99.4 Minus
CG13796-PA 1686 CG13796-RA 313..669 915..559 1735 99.4 Minus
CG13796-PC 1686 CG13796-RC 313..669 915..559 1735 99.4 Minus
CG7216-PA 408 Acp1-RA 371..408 205..168 190 100 Minus
CG7214-PA 429 CG7214-RA 338..381 248..205 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31904-RB 3572 CG31904-RB 2424..3320 915..19 4455 99.8 Minus
CG31904-RD 1943 CG31904-RD 795..1691 915..19 4455 99.8 Minus
Acp1-RA 858 CG7216-RA 63..613 558..19 2580 98 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7734667..7735206 19..558 2700 100 Plus
2L 23513712 2L 7740807..7741357 19..558 2555 98 Plus
2L 23513712 2L 7729180..7729357 559..736 890 100 Plus
2L 23513712 2L 7735320..7735497 559..736 890 100 Plus
2L 23513712 2L 7729418..7729550 734..866 665 100 Plus
2L 23513712 2L 7735558..7735690 734..866 665 100 Plus
2L 23513712 2L 7730198..7730246 867..915 215 95.9 Plus
2L 23513712 2L 7736338..7736386 867..915 215 95.9 Plus
Blast to na_te.dros performed on 2015-02-11 10:59:01 has no hits.

BO10727.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:47:23 Download gff for BO10727.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31904-PD 313..1212 18..915 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:03:47 Download gff for BO10727.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31904-PB 313..1212 18..915 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:26:42 Download gff for BO10727.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31904-RD 795..1695 13..915 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:36:28 Download gff for BO10727.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31904-RD 795..1695 13..915 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:36:28 Download gff for BO10727.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7735559..7735690 735..866 100 <- Plus
2L 7736338..7736386 867..915 95   Plus
2L 7734663..7735206 13..558 99 <- Plus
2L 7735320..7735495 559..734 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:26:42 Download gff for BO10727.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7736338..7736386 867..915 95   Plus
arm_2L 7734663..7735206 13..558 99 <- Plus
arm_2L 7735320..7735495 559..734 100 <- Plus
arm_2L 7735559..7735690 735..866 100 <- Plus

BO10727.5prime Sequence

615 bp (604 high quality bases) assembled on 2006-04-19

> BO10727.5prime
GAAGTTATCAGTCGACATGAAGGGCATCTGCGGTGAGCAGCTCAACAATT
GCATGCTCCTGGGCGACTGTGAGAATAGTGAACATGGCACAGAACTGCCC
GGTGATTTTATCGGGGAGCCAGTGGAAACGGAGTCCGGAGGCGGAATGGG
CGGTAGTCTGGCCCTAGCCGCCCGTCGTATCCGAAGCCGCCAGGTGCACA
GCATGGCCGTGCGAACGGGTAGTGCGTATGATACCCTGGAGCGACCATAT
CGGCATGATAAATGTCGTGGTCGTTGGGCCAAATCGGCGGACTTTTACTT
TGCCAGCTGCACACATGCCTTCAGTTCGCTGATCTTTTCGGAGCTCTCCA
CCTTTGGAATACTTCATGGCGGTTGGCTTTTGTTTATAATCGCCTACCTG
ATGGGAATGCTATTTTACTCGCTGCCAATATTTTTGATCCAAGCCTTTTT
GGGACAGTTTTCAAGTTCTGGAACCATATCAGCATTTCGCGTGGCGCCAA
TATTTAAAGGCATTGGCTACGCCATTCTGCTCCTCAATCTGGGAACGCTC
ACCTATTACAGTATAGCAGCTGTAGTGCCCCTCATATATACCGTGAATTC
AATACACCCAGTGAT

BO10727.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13796-PB 1686 CG13796-RB 1..599 17..615 2995 100 Plus
CG13796-PA 1686 CG13796-RA 1..599 17..615 2995 100 Plus
CG13796-PC 1686 CG13796-RC 1..599 17..615 2995 100 Plus
CG31904-PD 1212 CG31904-RD 1..599 17..615 2995 100 Plus
CG31904-PB 1212 CG31904-RB 1..599 17..615 2995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31904-RB 3572 CG31904-RB 2110..2710 15..615 3005 100 Plus
CG31904-RD 1943 CG31904-RD 481..1081 15..615 3005 100 Plus
CG13796-RD 2711 CG13796-RD 444..1044 15..615 3005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7730198..7730560 377..15 1815 100 Minus
2L 23513712 2L 7736338..7736700 377..15 1815 100 Minus
2L 23513712 2L 7729418..7729550 510..378 665 100 Minus
2L 23513712 2L 7735558..7735690 510..378 665 100 Minus
2L 23513712 2L 7729250..7729357 615..508 540 100 Minus
2L 23513712 2L 7735390..7735497 615..508 540 100 Minus
Blast to na_te.dros performed on 2015-02-04 10:36:37 has no hits.

BO10727.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:47:24 Download gff for BO10727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13796-PB 1..599 17..615 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:03:48 Download gff for BO10727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31904-PB 1..599 17..615 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:27:08 Download gff for BO10727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13796-RD 436..1044 7..615 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:38:19 Download gff for BO10727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13796-RD 436..1044 7..615 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:38:19 Download gff for BO10727.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7729250..7729355 510..615 100 <- Minus
2L 7729419..7729550 378..509 100 <- Minus
2L 7730198..7730568 7..377 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:27:08 Download gff for BO10727.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7729250..7729355 510..615 100 <- Minus
arm_2L 7729419..7729550 378..509 100 <- Minus
arm_2L 7730198..7730568 7..377 98   Minus

BO10727.complete Sequence

1243 bp (1243 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631858

> BO10727.complete
GAAGTTATCAGTCGACATGAAGGGCATCTGCGGTGAGCAGCTCAACAATT
GCATGCTCCTGGGCGACTGTGAGAATAGTGAACATGGCACAGAACTGCCC
GGTGATTTTATCGGGGAGCCAGTGGAAACGGAGTCCGGAGGCGGAATGGG
CGGTAGTCTGGCCCTAGCCGCCCGTCGTATCCGAAGCCGCCAGGTGCACA
GCATGGCCGTGCGAACGGGTAGTGCGTATGATACCCTGGAGCGACCATAT
CGGCATGATAAATGTCGTGGTCGTTGGGCCAAATCGGCGGACTTTTACTT
TGCCAGCTGCACACATGCCTTCAGTTCGCTGATCTTTTCGGAGCTCTCCA
CCTTTGGAATACTTCATGGCGGTTGGCTTTTGTTTATAATCGCCTACCTG
ATGGGAATGCTATTTTACTCGCTGCCAATATTTTTGATCCAAGCCTTTTT
GGGACAGTTTTCAAGTTCTGGAACCATATCAGCATTTCGCGTGGCGCCAA
TATTTAAAGGCATTGGCTACGCCATTCTGCTCCTCAATCTGGGAACGCTC
ACCTATTACAGTATAGCAGCTGTAGTGCCCCTCATATATACCGTGAATTC
AATACACCCAGTGATACCCTGGATGAGTTGCAACAATAGTTGGAATACCC
AGGAGTGTTCCTTGCACGAGAACTACGACGTCGATTTCGCCGTCGCCGTT
ATCTTCACCTTGGCCCTCGCCATGGGCGTGCAGTCGTCTGTGATCCCCCT
GCTGTCCCAGGTGGCTGGACATGGACTGTCCTACACCGCCGTTTCCGGAC
CCGCTGTGGTGGCCTCTCCCTGGGCCGTTCCCGCCGCCCACTGGCCTGCT
GCCGTGAACGTGGCTTCGTGGCCTCCGGCAGCGATCCACGCCGCCGCTCC
TGCCGTGCTTGCTGCCCCTGCTCCCGCTGTGGTTGCTGCTCATGCTCCCT
CAGTCGTCGTGGCCCCAGTGGCTCACAGTGGCGTCTACACTGCCCAGACC
CGTGGTGCCATTCACACCGCTCCTCTGGCCGGACACATCCTCCATCAATG
CCGCTCCCGCACCCGGAACCTTGTAAGGAGTATACCGCCTTCAATCCCTT
TGTCGATCGGACCATTGCCTCTGCCACGGATACTGCCATTGATGGGGAAG
TCGAACTTTAGACCCCTCAACACGTTATGTAAATACATTGTATATATAGC
CATATATAGACAGGGTACTCGCACCGCAAGCTTTCTAGACCAT

BO10727.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG31904-RB 1212 CG31904-PB 1..1209 17..1225 6045 100 Plus
CG31904-RD 1212 CG31904-PD 1..1209 17..1225 6045 100 Plus
CG13796-RD 1926 CG13796-PD 1..669 17..685 3345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31904-RB 3572 CG31904-RB 2110..3320 15..1225 6055 100 Plus
CG31904-RD 1943 CG31904-RD 481..1691 15..1225 6055 100 Plus
CG13796-RD 2711 CG13796-RD 444..1114 15..685 3355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7734667..7735206 1225..686 2700 100 Minus
2L 23513712 2L 7740807..7741357 1225..686 2555 98 Minus
2L 23513712 2L 7730198..7730560 377..15 1815 100 Minus
2L 23513712 2L 7736338..7736700 377..15 1815 100 Minus
2L 23513712 2L 7729180..7729357 685..508 890 100 Minus
2L 23513712 2L 7735320..7735497 685..508 890 100 Minus
2L 23513712 2L 7729418..7729550 510..378 665 100 Minus
2L 23513712 2L 7735558..7735690 510..378 665 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:59:17 has no hits.

BO10727.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:56 Download gff for BO10727.complete
Subject Subject Range Query Range Percent Splice Strand
CG31904-RB 1..1212 17..1226 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:18 Download gff for BO10727.complete
Subject Subject Range Query Range Percent Splice Strand
CG31904-RB 2088..3310 7..1231 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:34 Download gff for BO10727.complete
Subject Subject Range Query Range Percent Splice Strand
CG31904-RD 483..1691 17..1227 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:56 Download gff for BO10727.complete
Subject Subject Range Query Range Percent Splice Strand
CG31904-RB 2088..3310 7..1231 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:50 Download gff for BO10727.complete
Subject Subject Range Query Range Percent Splice Strand
CG31904-RD 483..1691 17..1227 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:50 Download gff for BO10727.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7734663..7735206 686..1227 99 <- Minus
2L 7735320..7735495 510..685 100 <- Minus
2L 7735559..7735690 378..509 100 <- Minus
2L 7736338..7736698 17..377 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:34 Download gff for BO10727.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7734663..7735206 686..1227 99 <- Minus
arm_2L 7735320..7735495 510..685 100 <- Minus
arm_2L 7735559..7735690 378..509 100 <- Minus
arm_2L 7736338..7736698 17..377 100   Minus

BO10727.pep Sequence

Translation from 16 to 1243

> BO10727.pep
MKGICGEQLNNCMLLGDCENSEHGTELPGDFIGEPVETESGGGMGGSLAL
AARRIRSRQVHSMAVRTGSAYDTLERPYRHDKCRGRWAKSADFYFASCTH
AFSSLIFSELSTFGILHGGWLLFIIAYLMGMLFYSLPIFLIQAFLGQFSS
SGTISAFRVAPIFKGIGYAILLLNLGTLTYYSIAAVVPLIYTVNSIHPVI
PWMSCNNSWNTQECSLHENYDVDFAVAVIFTLALAMGVQSSVIPLLSQVA
GHGLSYTAVSGPAVVASPWAVPAAHWPAAVNVASWPPAAIHAAAPAVLAA
PAPAVVAAHAPSVVVAPVAHSGVYTAQTRGAIHTAPLAGHILHQCRSRTR
NLVRSIPPSIPLSIGPLPLPRILPLMGKSNFRPLNTLCKYIVYIAIYRQG
TRTASFLDH

BO10727.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG31904-PB 403 CG31904-PB 1..403 1..403 2109 100 Plus
CG31904-PD 403 CG31904-PD 1..403 1..403 2109 100 Plus
CG13796-PD 641 CG13796-PD 1..223 1..223 1187 100 Plus
CG13796-PC 641 CG13796-PC 1..223 1..223 1187 100 Plus
CG13796-PA 641 CG13796-PA 1..223 1..223 1187 100 Plus