Clone Sequence Records
BO10727.3prime Sequence
915 bp (795 high quality bases) assembled on 2006-04-19
> BO10727.3prime
ATGGTCTAGAAAGCTTGCGGTGCGAGTACCCTGTCTATATATGGCTATAT
ATACAATGTATTTACATAACGTGTTGAGGGGTCTAAAGTTCGACTTCCCC
ATCAATGGCAGTATCCGTGGCAGAGGCAATGGTCCGATCGACAAAGGGAT
TGAAGGCGGTATACTCCTTACAAGGTTCCGGGTGCGGGAGCGGCATTGAT
GGAGGATGTGTCCGGCCAGAGGAGCGGTGTGAATGGCACCACGGGTCTGG
GCAGTGTAGACGCCACTGTGAGCCACTGGGGCCACGACGACTGAGGGAGC
ATGAGCAGCAACCACAGCGGGAGCAGGGGCAGCAAGCACGGCAGGAGCGG
CGGCGTGGATCGCTGCCGGAGGCCACGAAGCCACGTTCACGGCAGCAGGC
CAGTGGGCGGCGGGAACGGCCCAGGGAGAGGCCACCACAGCGGGTCCGGA
AACGGCGGTGTAGGACAGTCCATGTCCAGCCACCTGGGACAGCAGGGGGA
TCACAGACGACTGCACGCCCATGGCGAGGGCCAAGGTGAAGATAACGGCG
ACGGCGAAATCGACGTCGTAGTTCTCGTGCAAGGAACACTCCTGGGTATT
CCAACTATTGTTGCAACTCATCCAGGGTATCACTGGGTGTATTGAATTCA
CGGTATATATGAGGGGCACTACAGCTGCTATACTGTAATAGGTGAGCGTT
CCCAGATTGAGGAGCAGAATGGCGTAGCCAATGCCTTTAAATATTGGCGC
CACGCGAAATGCTGATATGGTTCCAGAACTTGAAAACTGTCCCAAAAAGG
CTTGGATCAAAAATATTGGCAGCGAGTAAAATAGCATTCCCATCAGGTAG
GCGATTATAAACAAAAGCCAACCGCCATGAAGTATTCCAAAAGTGGAGAG
CTCCCAAAAGATCAG
BO10727.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:09:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31904-PD | 1212 | CG31904-RD | 313..1209 | 915..19 | 4435 | 99.7 | Minus |
CG31904-PB | 1212 | CG31904-RB | 313..1209 | 915..19 | 4435 | 99.7 | Minus |
CG7216-PA | 408 | Acp1-RA | 7..361 | 558..204 | 1775 | 100 | Minus |
CG13796-PB | 1686 | CG13796-RB | 313..669 | 915..559 | 1735 | 99.4 | Minus |
CG13796-PA | 1686 | CG13796-RA | 313..669 | 915..559 | 1735 | 99.4 | Minus |
CG13796-PC | 1686 | CG13796-RC | 313..669 | 915..559 | 1735 | 99.4 | Minus |
CG7216-PA | 408 | Acp1-RA | 371..408 | 205..168 | 190 | 100 | Minus |
CG7214-PA | 429 | CG7214-RA | 338..381 | 248..205 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:59:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31904-RB | 3572 | CG31904-RB | 2424..3320 | 915..19 | 4455 | 99.8 | Minus |
CG31904-RD | 1943 | CG31904-RD | 795..1691 | 915..19 | 4455 | 99.8 | Minus |
Acp1-RA | 858 | CG7216-RA | 63..613 | 558..19 | 2580 | 98 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:58:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7734667..7735206 | 19..558 | 2700 | 100 | Plus |
2L | 23513712 | 2L | 7740807..7741357 | 19..558 | 2555 | 98 | Plus |
2L | 23513712 | 2L | 7729180..7729357 | 559..736 | 890 | 100 | Plus |
2L | 23513712 | 2L | 7735320..7735497 | 559..736 | 890 | 100 | Plus |
2L | 23513712 | 2L | 7729418..7729550 | 734..866 | 665 | 100 | Plus |
2L | 23513712 | 2L | 7735558..7735690 | 734..866 | 665 | 100 | Plus |
2L | 23513712 | 2L | 7730198..7730246 | 867..915 | 215 | 95.9 | Plus |
2L | 23513712 | 2L | 7736338..7736386 | 867..915 | 215 | 95.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:59:01 has no hits.
BO10727.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:47:23 Download gff for
BO10727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31904-PD | 313..1212 | 18..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:03:47 Download gff for
BO10727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31904-PB | 313..1212 | 18..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:26:42 Download gff for
BO10727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31904-RD | 795..1695 | 13..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:36:28 Download gff for
BO10727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31904-RD | 795..1695 | 13..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:36:28 Download gff for
BO10727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7735559..7735690 | 735..866 | 100 | <- | Plus |
2L | 7736338..7736386 | 867..915 | 95 | | Plus |
2L | 7734663..7735206 | 13..558 | 99 | <- | Plus |
2L | 7735320..7735495 | 559..734 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:26:42 Download gff for
BO10727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7736338..7736386 | 867..915 | 95 | | Plus |
arm_2L | 7734663..7735206 | 13..558 | 99 | <- | Plus |
arm_2L | 7735320..7735495 | 559..734 | 100 | <- | Plus |
arm_2L | 7735559..7735690 | 735..866 | 100 | <- | Plus |
BO10727.5prime Sequence
615 bp (604 high quality bases) assembled on 2006-04-19
> BO10727.5prime
GAAGTTATCAGTCGACATGAAGGGCATCTGCGGTGAGCAGCTCAACAATT
GCATGCTCCTGGGCGACTGTGAGAATAGTGAACATGGCACAGAACTGCCC
GGTGATTTTATCGGGGAGCCAGTGGAAACGGAGTCCGGAGGCGGAATGGG
CGGTAGTCTGGCCCTAGCCGCCCGTCGTATCCGAAGCCGCCAGGTGCACA
GCATGGCCGTGCGAACGGGTAGTGCGTATGATACCCTGGAGCGACCATAT
CGGCATGATAAATGTCGTGGTCGTTGGGCCAAATCGGCGGACTTTTACTT
TGCCAGCTGCACACATGCCTTCAGTTCGCTGATCTTTTCGGAGCTCTCCA
CCTTTGGAATACTTCATGGCGGTTGGCTTTTGTTTATAATCGCCTACCTG
ATGGGAATGCTATTTTACTCGCTGCCAATATTTTTGATCCAAGCCTTTTT
GGGACAGTTTTCAAGTTCTGGAACCATATCAGCATTTCGCGTGGCGCCAA
TATTTAAAGGCATTGGCTACGCCATTCTGCTCCTCAATCTGGGAACGCTC
ACCTATTACAGTATAGCAGCTGTAGTGCCCCTCATATATACCGTGAATTC
AATACACCCAGTGAT
BO10727.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:09:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13796-PB | 1686 | CG13796-RB | 1..599 | 17..615 | 2995 | 100 | Plus |
CG13796-PA | 1686 | CG13796-RA | 1..599 | 17..615 | 2995 | 100 | Plus |
CG13796-PC | 1686 | CG13796-RC | 1..599 | 17..615 | 2995 | 100 | Plus |
CG31904-PD | 1212 | CG31904-RD | 1..599 | 17..615 | 2995 | 100 | Plus |
CG31904-PB | 1212 | CG31904-RB | 1..599 | 17..615 | 2995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:36:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31904-RB | 3572 | CG31904-RB | 2110..2710 | 15..615 | 3005 | 100 | Plus |
CG31904-RD | 1943 | CG31904-RD | 481..1081 | 15..615 | 3005 | 100 | Plus |
CG13796-RD | 2711 | CG13796-RD | 444..1044 | 15..615 | 3005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:36:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7730198..7730560 | 377..15 | 1815 | 100 | Minus |
2L | 23513712 | 2L | 7736338..7736700 | 377..15 | 1815 | 100 | Minus |
2L | 23513712 | 2L | 7729418..7729550 | 510..378 | 665 | 100 | Minus |
2L | 23513712 | 2L | 7735558..7735690 | 510..378 | 665 | 100 | Minus |
2L | 23513712 | 2L | 7729250..7729357 | 615..508 | 540 | 100 | Minus |
2L | 23513712 | 2L | 7735390..7735497 | 615..508 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 10:36:37 has no hits.
BO10727.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:47:24 Download gff for
BO10727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13796-PB | 1..599 | 17..615 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:03:48 Download gff for
BO10727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31904-PB | 1..599 | 17..615 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:27:08 Download gff for
BO10727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13796-RD | 436..1044 | 7..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:38:19 Download gff for
BO10727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13796-RD | 436..1044 | 7..615 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:38:19 Download gff for
BO10727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7729250..7729355 | 510..615 | 100 | <- | Minus |
2L | 7729419..7729550 | 378..509 | 100 | <- | Minus |
2L | 7730198..7730568 | 7..377 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:27:08 Download gff for
BO10727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7729250..7729355 | 510..615 | 100 | <- | Minus |
arm_2L | 7729419..7729550 | 378..509 | 100 | <- | Minus |
arm_2L | 7730198..7730568 | 7..377 | 98 | | Minus |
BO10727.complete Sequence
1243 bp (1243 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631858
> BO10727.complete
GAAGTTATCAGTCGACATGAAGGGCATCTGCGGTGAGCAGCTCAACAATT
GCATGCTCCTGGGCGACTGTGAGAATAGTGAACATGGCACAGAACTGCCC
GGTGATTTTATCGGGGAGCCAGTGGAAACGGAGTCCGGAGGCGGAATGGG
CGGTAGTCTGGCCCTAGCCGCCCGTCGTATCCGAAGCCGCCAGGTGCACA
GCATGGCCGTGCGAACGGGTAGTGCGTATGATACCCTGGAGCGACCATAT
CGGCATGATAAATGTCGTGGTCGTTGGGCCAAATCGGCGGACTTTTACTT
TGCCAGCTGCACACATGCCTTCAGTTCGCTGATCTTTTCGGAGCTCTCCA
CCTTTGGAATACTTCATGGCGGTTGGCTTTTGTTTATAATCGCCTACCTG
ATGGGAATGCTATTTTACTCGCTGCCAATATTTTTGATCCAAGCCTTTTT
GGGACAGTTTTCAAGTTCTGGAACCATATCAGCATTTCGCGTGGCGCCAA
TATTTAAAGGCATTGGCTACGCCATTCTGCTCCTCAATCTGGGAACGCTC
ACCTATTACAGTATAGCAGCTGTAGTGCCCCTCATATATACCGTGAATTC
AATACACCCAGTGATACCCTGGATGAGTTGCAACAATAGTTGGAATACCC
AGGAGTGTTCCTTGCACGAGAACTACGACGTCGATTTCGCCGTCGCCGTT
ATCTTCACCTTGGCCCTCGCCATGGGCGTGCAGTCGTCTGTGATCCCCCT
GCTGTCCCAGGTGGCTGGACATGGACTGTCCTACACCGCCGTTTCCGGAC
CCGCTGTGGTGGCCTCTCCCTGGGCCGTTCCCGCCGCCCACTGGCCTGCT
GCCGTGAACGTGGCTTCGTGGCCTCCGGCAGCGATCCACGCCGCCGCTCC
TGCCGTGCTTGCTGCCCCTGCTCCCGCTGTGGTTGCTGCTCATGCTCCCT
CAGTCGTCGTGGCCCCAGTGGCTCACAGTGGCGTCTACACTGCCCAGACC
CGTGGTGCCATTCACACCGCTCCTCTGGCCGGACACATCCTCCATCAATG
CCGCTCCCGCACCCGGAACCTTGTAAGGAGTATACCGCCTTCAATCCCTT
TGTCGATCGGACCATTGCCTCTGCCACGGATACTGCCATTGATGGGGAAG
TCGAACTTTAGACCCCTCAACACGTTATGTAAATACATTGTATATATAGC
CATATATAGACAGGGTACTCGCACCGCAAGCTTTCTAGACCAT
BO10727.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31904-RB | 1212 | CG31904-PB | 1..1209 | 17..1225 | 6045 | 100 | Plus |
CG31904-RD | 1212 | CG31904-PD | 1..1209 | 17..1225 | 6045 | 100 | Plus |
CG13796-RD | 1926 | CG13796-PD | 1..669 | 17..685 | 3345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31904-RB | 3572 | CG31904-RB | 2110..3320 | 15..1225 | 6055 | 100 | Plus |
CG31904-RD | 1943 | CG31904-RD | 481..1691 | 15..1225 | 6055 | 100 | Plus |
CG13796-RD | 2711 | CG13796-RD | 444..1114 | 15..685 | 3355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:59:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7734667..7735206 | 1225..686 | 2700 | 100 | Minus |
2L | 23513712 | 2L | 7740807..7741357 | 1225..686 | 2555 | 98 | Minus |
2L | 23513712 | 2L | 7730198..7730560 | 377..15 | 1815 | 100 | Minus |
2L | 23513712 | 2L | 7736338..7736700 | 377..15 | 1815 | 100 | Minus |
2L | 23513712 | 2L | 7729180..7729357 | 685..508 | 890 | 100 | Minus |
2L | 23513712 | 2L | 7735320..7735497 | 685..508 | 890 | 100 | Minus |
2L | 23513712 | 2L | 7729418..7729550 | 510..378 | 665 | 100 | Minus |
2L | 23513712 | 2L | 7735558..7735690 | 510..378 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:59:17 has no hits.
BO10727.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:56 Download gff for
BO10727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31904-RB | 1..1212 | 17..1226 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:20:18 Download gff for
BO10727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31904-RB | 2088..3310 | 7..1231 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:34 Download gff for
BO10727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31904-RD | 483..1691 | 17..1227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:56 Download gff for
BO10727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31904-RB | 2088..3310 | 7..1231 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:50 Download gff for
BO10727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31904-RD | 483..1691 | 17..1227 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:50 Download gff for
BO10727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7734663..7735206 | 686..1227 | 99 | <- | Minus |
2L | 7735320..7735495 | 510..685 | 100 | <- | Minus |
2L | 7735559..7735690 | 378..509 | 100 | <- | Minus |
2L | 7736338..7736698 | 17..377 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:34 Download gff for
BO10727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7734663..7735206 | 686..1227 | 99 | <- | Minus |
arm_2L | 7735320..7735495 | 510..685 | 100 | <- | Minus |
arm_2L | 7735559..7735690 | 378..509 | 100 | <- | Minus |
arm_2L | 7736338..7736698 | 17..377 | 100 | | Minus |
BO10727.pep Sequence
Translation from 16 to 1243
> BO10727.pep
MKGICGEQLNNCMLLGDCENSEHGTELPGDFIGEPVETESGGGMGGSLAL
AARRIRSRQVHSMAVRTGSAYDTLERPYRHDKCRGRWAKSADFYFASCTH
AFSSLIFSELSTFGILHGGWLLFIIAYLMGMLFYSLPIFLIQAFLGQFSS
SGTISAFRVAPIFKGIGYAILLLNLGTLTYYSIAAVVPLIYTVNSIHPVI
PWMSCNNSWNTQECSLHENYDVDFAVAVIFTLALAMGVQSSVIPLLSQVA
GHGLSYTAVSGPAVVASPWAVPAAHWPAAVNVASWPPAAIHAAAPAVLAA
PAPAVVAAHAPSVVVAPVAHSGVYTAQTRGAIHTAPLAGHILHQCRSRTR
NLVRSIPPSIPLSIGPLPLPRILPLMGKSNFRPLNTLCKYIVYIAIYRQG
TRTASFLDH
BO10727.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:31:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31904-PB | 403 | CG31904-PB | 1..403 | 1..403 | 2109 | 100 | Plus |
CG31904-PD | 403 | CG31904-PD | 1..403 | 1..403 | 2109 | 100 | Plus |
CG13796-PD | 641 | CG13796-PD | 1..223 | 1..223 | 1187 | 100 | Plus |
CG13796-PC | 641 | CG13796-PC | 1..223 | 1..223 | 1187 | 100 | Plus |
CG13796-PA | 641 | CG13796-PA | 1..223 | 1..223 | 1187 | 100 | Plus |